Clone Sequence Records
BS11057.3prime Sequence
895 bp (846 high quality bases) assembled on 2006-04-19
> BS11057.3prime
ATGGTCTAGAAAGTTTACAGCCAACGACTCAGTATGTGACAGAGGAGCAG
CAGCCCCAGGTTGGCGTACACGGAGCAGGCCTTTCCGCACAGCTTAATGC
CGCTCTCGTTCGCGTGCCGACTGATGCAGCTGTGTGGTCGCATGCGGTTG
AACTCGCGAGCCTGCTTGTAGCATGCCAACGAATCGTTGACCGACAGATG
ATAGTCGATCGGCTGCGGATTCACCGTGAGGACGACTGAGCCGTCCCTGG
GACACAGCTGGTCGATGACCAGCAGGATGAGGTTGCTGAACGGGATGGGC
AGGACGACAAATGGCCGCTCACATGCATGGGCTGTCATATTGTAGACAAC
GTTGTCCTTTTCATTGAACAGCGTGTACAGATCGCGCTTCATGTCGCACG
GCTTGAGCCGGGTGCGATGGAGTGTCAAGTAGCGCAGCCAGTGGTCATCG
TCCTTCTTCCCATGCCCATTGCCGTTGCGAGCATGGTGATCCGGATGCGG
CTCCGGCGGCGGTGGCTCCGTGTCGTTGGAGTCACCATACATATCCGCAT
AGTGGCTGGACACACCGGGCGCCCACTGCAACAGTTGTACAATATACCAC
AGCGCCGTATGCAGCAGCCATTTGCCCACGCGCAGCAGATGGAACAGGGG
CGAAAGCAGCATGCTGGAGGCGTTGTTATCGTTCTTGGACTCGAAGCACA
CCGCCTGGTAATCGTAGACAGTGACCTGCCTGTAGACATTCTCCTCCAGT
AGTCGCTTCATGATCGCTCCGTTCACCTCGCCAAAGAATCGACCCGTCTC
GTGGACCCTCGTCGAAATGATCACATAGCCATTGTTGTCCAGTATATAGC
AGTCTTTGTCATCCACGGCACAGGCATTGCCGGTGATGTTGTGGA
BS11057.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12295-PB | 3657 | CG12295-RB | 2777..3657 | 895..15 | 4405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stj-RD | 4866 | CG12295-RD | 3643..4523 | 895..15 | 4405 | 100 | Minus |
| stj-RC | 5825 | CG12295-RC | 3354..4234 | 895..15 | 4405 | 100 | Minus |
| stj-RB | 6057 | CG12295-RB | 3586..4466 | 895..15 | 4405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13817066..13817610 | 651..107 | 2725 | 100 | Minus |
| 2R | 25286936 | 2R | 13816755..13816979 | 875..651 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 13817888..13817980 | 107..15 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:46:29 has no hits.
BS11057.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:25 Download gff for
BS11057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12295-PB | 2778..3657 | 15..894 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:16 Download gff for
BS11057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12295-PB | 2778..3657 | 15..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:22:12 Download gff for
BS11057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stj-RB | 3587..4466 | 15..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:13 Download gff for
BS11057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stj-RB | 3587..4466 | 15..894 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:13 Download gff for
BS11057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13816683..13816701 | 876..894 | 100 | -> | Minus |
| 2R | 13816755..13816979 | 651..875 | 100 | -> | Minus |
| 2R | 13817067..13817609 | 108..650 | 100 | -> | Minus |
| 2R | 13817888..13817980 | 15..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:22:12 Download gff for
BS11057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9704188..9704206 | 876..894 | 100 | -> | Minus |
| arm_2R | 9704260..9704484 | 651..875 | 100 | -> | Minus |
| arm_2R | 9704572..9705114 | 108..650 | 100 | -> | Minus |
| arm_2R | 9705393..9705485 | 15..107 | 100 | | Minus |
BS11057.5prime Sequence
810 bp (800 high quality bases) assembled on 2006-04-19
> BS11057.5prime
GAAGTTATCAGTCGACATGGCCTGGTCCCGTCTCCTGGCCTGGTGGCGCC
TCTGCTTGGGCCTGCTCTCCGTTCTGGTCTGTTTGGCACCGTGCGTCAAT
CTGCAGCCAGCCGAGAACATCAACTACAATCTCGTTCATTCGTGGGCCGA
CAAATTGGGCATGGAGCTGTTTCATCTGGGCGATTTCATCACCAGGCGCA
AGGAGGTGCAAGAGAGTTTCAAGGATGCAAAGGTCGTTTCGCGCAACGGC
GCTTCTATTGTCGATTCGATGGCCAAGGAAATCGAAATGATGATGGACCT
AAAAGTCAGTGCAGTGAGGCGAATCATGGACACGGCTGAGAACACGGCGT
TGTCGCATCAGAACGACATGGCGGACAAGATGTTCTCCTATTATAGTGCC
AAGGAGATGCTGGAGCCCGGCGATCCAGTCCCGCCCATTCCCACACCGGC
TCCCGACATGGACAAGGATATAGGCGAGCCGCTGATCTACGTCCAGCCGA
AGGTGGTGGTGTTGGAACCGCGTCCGGAATTCCACAATACTCCGGTCAAC
TTTAGCGTCAGTTCGGTCCACGTGCCAGTCAATGTGTTCGATCGAGCACC
GGATGTGATAAAAGCAATTCAGTGGTCGGAGAATTTGGATCAGATATTCC
GTGACAATTACAAAAACGATCCGACATTGTCGTGGCAATTCTTTGGCAGT
TCGACTGGCTTTATGCGTCAATTCCCTGCATCGAAGTGGCGAAAGGACGT
ACCGGTCGATCTATACGATTGCCGACTACGCTCCTGGTACATGGAGGCGG
CGACGAGTCC
BS11057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12295-PB | 3657 | CG12295-RB | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stj-RD | 4866 | CG12295-RD | 809..1603 | 16..810 | 3975 | 100 | Plus |
| stj-RC | 5825 | CG12295-RC | 418..1212 | 16..810 | 3975 | 100 | Plus |
| stj-RB | 6057 | CG12295-RB | 809..1603 | 16..810 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13807898..13808175 | 319..596 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 13809273..13809488 | 595..810 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 13806602..13806718 | 16..132 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 13807726..13807836 | 209..319 | 540 | 99.1 | Plus |
| 2R | 25286936 | 2R | 13806797..13806878 | 133..214 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:55:19 has no hits.
BS11057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:26 Download gff for
BS11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12295-PB | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:18 Download gff for
BS11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12295-PB | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:39:52 Download gff for
BS11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stj-RB | 801..1603 | 8..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:08 Download gff for
BS11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stj-RB | 801..1603 | 8..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:08 Download gff for
BS11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13807732..13807836 | 215..319 | 100 | -> | Plus |
| 2R | 13807899..13808175 | 320..596 | 100 | -> | Plus |
| 2R | 13809275..13809488 | 597..810 | 100 | | Plus |
| 2R | 13806594..13806718 | 8..132 | 97 | -> | Plus |
| 2R | 13806797..13806878 | 133..214 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:39:52 Download gff for
BS11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9694099..9694223 | 8..132 | 97 | -> | Plus |
| arm_2R | 9694302..9694383 | 133..214 | 100 | -> | Plus |
| arm_2R | 9695237..9695341 | 215..319 | 100 | -> | Plus |
| arm_2R | 9695404..9695680 | 320..596 | 100 | -> | Plus |
| arm_2R | 9696780..9696993 | 597..810 | 100 | | Plus |
BS11057.complete Sequence
3687 bp assembled on 2010-05-03
GenBank Submission: KX803269
> BS11057.complete
GAAGTTATCAGTCGACATGGCCTGGTCCCGTCTCCTGGCCTGGTGGCGCC
TCTGCTTGGGCCTGCTCTCCGTTCTGGTCTGTTTGGCACCGTGCGTCAAT
CTGCAGCCAGCCGAGAACATCAACTACAATCTCGTTCATTCGTGGGCCGA
CAAATTGGGCATGGAGCTGTTTCATCTGGGCGATTTCATCACCAGGCGCA
AGGAGGTGCAAGAGAGTTTCAAGGATGCAAAGGTCGTTTCGCGCAACGGC
GCTTCTATTGTCGATTCGATGGCCAAGGAAATCGAAATGATGATGGACCT
AAAAGTCAGTGCAGTGAGGCGAATCATGGACACGGCTGAGAACACGGCGT
TGTCGCATCAGAACGACATGGCGGACAAGATGTTCTCCTATTATAGTGCC
AAGGAGATGCTGGAGCCCGGCGATCCAGTCCCGCCCATTCCCACACCGGC
TCCCGACATGGACAAGGATATAGGCGAGCCGCTGATCTACGTCCAGCCGA
AGGTGGTGGTGTTGGAACCGCGTCCGGAATTCCACAATACTCCGGTCAAC
TTTAGCGTCAGTTCGGTCCACGTGCCAGTCAATGTGTTCGATCGAGCACC
GGATGTGATAAAAGCAATTCAGTGGTCGGAGAATTTGGATCAGATATTCC
GTGACAATTACAAAAACGATCCGACATTGTCGTGGCAATTCTTTGGCAGT
TCGACTGGCTTTATGCGTCAATTCCCTGCATCGAAGTGGCGAAAGGACGT
ACCGGTCGATCTATACGATTGCCGACTACGCTCCTGGTACATGGAGGCGG
CGACGAGTCCGAAGGATATTGTTATCCTGATGGATGGATCCGGTTCAATG
TTGGGACAGAGGCTAGATATCGCAAAGCATGTTGTCAATACGATACTCGA
TACATTAGGTACAAATGACTTTGTGAACATCTTCACCTTTGATAAGGAAG
TGAGCCCAGTCGTCCCATGTTTCGAAGACACACTGATTCAAGCCAATCTG
GGCAACATACGCGAACTGAAAGAAGGGATTGAACTGTTTAGACCCAAATC
GATCGCCAATTATACCGCTGCATTGACAAAGGCATTCGAGCTATTGGAAG
AGACCAAGTTGAGTTCGCGCGGGGCGCAGTGCAATCAGGCGATCATGATC
ATTGGCGACGGGGCGCCGGAGAACAATCGCGAGGTCTTCGAGTTGCACAA
TTGGCGGGACCCGCCGTACAAGCCGGTCCGTGTGTTCACCTACCTGATTG
GCAAGGAGGTGGCCAATTGGGATGATATACGGTGGATGGCGTGCGAGAAT
CAGGGCTACTACGTCCACCTCAGCGACACCGCCGAGGTGCGCGAGATGGT
CTTGAATTACATACCGGTTATGGCCAGGCCGCTCGTCCTGGGCAGGCACG
ATCATCCGGTGATTTGGTCGCAGGTCTATGCGGACATCGAGGACACGAAG
CTATCCGACTATCTGTGGGACATTAATCAGTGCGAGTACCAGAAGGCCGA
TGTCCTCGAGTATTGGCAGGTGCACGATCGGATGCTGGAGCCCAGCGAAA
TGCACCGCCGGAAGTACAGAAGGATGAAGGAGACCTGGAACCAGCCGGTG
GACTCGAATGTGTACCAATTTATGACCACCGTATCGATGCCCATCTACGA
TCGTCGCGAGAACGCGACTAGGATTGCGAATATATTGGGCGTGGCCGGCA
CGGATGTGCCCATCAATGAAATCAAAAAGCTGCTGTCGCCGTTCACGCTC
GGCGTGAATGGCTATGCGTTTATAGTAACCAACAATGGTTATGTACTATT
CCATCCAGACTTTCGTCCAATTTTCCAAGGCTACATATTAAAGCCAGCAT
ACAATAGCGTTGACATGATTGAAGTCGAGCTATTGGATGACGATCGACCC
GCCAGAGACTTTAATCCAGTGCTGATGACGATAAGAGATTCTATAATCAA
TCAATCGACAGGCAGCAAATGGATGTTAGTCAAAAATCATTTCGATGAAA
TGAAACGGGTGGCACGCGTAAAGCGACAATACTACTGGACGGCCATCAAG
AAGACGCCCTTTACTCTGGTCATTTCCTATCCGGAGCAATACGGCGTGAG
TCACATGGACATCCGAGCTGACCAGGAGATCCATCGCATAAGCATAAAGG
GCACAAACTTGCGCAGCGTTTTCAGCGGCAAGCGGTGGAAAATTCATCCC
GACTGGCTATTTTGTAAGCACAGCAACAGGACATTCAAAACGCCAGAGAT
CGAACTGCTGTACTTTCTCGAGCGTATGTCTGAGCCTGGCTGGCGATGGC
CGGGTAGTCGGAGTGCTATGCCCCCGGAGCACGCGGCCGCCATGTTTTGC
GATCGGCAGCTAATGCAGGCTCTGGTCTTCGATGCCCGAGTCACCGGGTG
GTTCTCCAACAATACCAGCTTTAACTCCAAGGACGACAAAGGAAACGAAT
TCAAGCAGCGTTTTGGCGTCACCGTCGCCTTTTTGGCCACCCACAGTGGT
CTCACCCGCTGGCATGAGTTCCACTCGAATGCTGCCGAGGAATCCGGAGT
CGGCGAGACTTTTAGCCAAAATAACACGCGGGCCATCGATGAGATTTGGT
ACAAACGCGCCGTGGACCAACATTTTGTGCGGGAGGAGAGCTTCGTTTAC
TCCGTGCCCTTCGATGCGGGTGAAAGCAACTCAGAGATCCTGGTGACCGC
CAGTCATGCCGTTTTCCACAATGAGGGCGGCAAGACTGCACCGGCGGCTG
TTGTGGGCTTCCAGTTTCAGCATTCGGCGCTCTACAAGCTCTTCCACAAC
ATCACCGGCAATGCCTGTGCCGTGGATGACAAAGACTGCTATATACTGGA
CAACAATGGCTATGTGATCATTTCGACGAGGGTCCACGAGACGGGTCGAT
TCTTTGGCGAGGTGAACGGAGCGATCATGAAGCGACTACTGGAGGAGAAT
GTCTACAGGCAGGTCACTGTCTACGATTACCAGGCGGTGTGCTTCGAGTC
CAAGAACGATAACAACGCCTCCAGCATGCTGCTTTCGCCCCTGTTCCATC
TGCTGCGCGTGGGCAAATGGCTGCTGCATACGGCGCTGTGGTATATTGTA
CAACTGTTGCAGTGGGCGCCCGGTGTGTCCAGCCACTATGCGGATATGTA
TGGTGACTCCAACGACACGGAGCCACCGCCGCCGGAGCCGCATCCGGATC
ACCATGCTCGCAACGGCAATGGGCATGGGAAGAAGGACGATGACCACTGG
CTGCGCTACTTGACACTCCATCGCACCCGGCTCAAGCCGTGCGACATGAA
GCGCGATCTGTACACGCTGTTCAATGAAAAGGACAACGTTGTCTACAATA
TGACAGCCCATGCATGTGAGCGGCCATTTGTCGTCCTGCCCATCCCGTTC
AGCAACCTCATCCTGCTGGTCATCGACCAGCTGTGTCCCAGGGACGGCTC
AGTCGTCCTCACGGTGAATCCGCAGCCGATCGACTATCATCTGTCGGTCA
ACGATTCGTTGGCATGCTACAAGCAGGCTCGCGAGTTCAACCGCATGCGA
CCACACAGCTGCATCAGTCGGCACGCGAACGAGAGCGGCATTAAGCTGTG
CGGAAAGGCCTGCTCCGTGTACGCCAACCTGGGGCTGCTGCTCCTCTGTC
ACATACTGAGTCGTTGGCTGTAAACTTTCTAGACCAT
BS11057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stj-RB | 3657 | CG12295-PB | 1..3657 | 17..3673 | 18285 | 100 | Plus |
| stj-RD | 3714 | CG12295-PD | 1707..3714 | 1666..3673 | 10040 | 100 | Plus |
| stj-RD | 3714 | CG12295-PD | 1..1651 | 17..1667 | 8255 | 100 | Plus |
| stj-RC | 3816 | CG12295-PC | 1..1650 | 17..1666 | 8250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stj-RB | 6057 | CG12295-RB | 809..4466 | 16..3673 | 18290 | 100 | Plus |
| stj-RD | 4866 | CG12295-RD | 2516..4523 | 1666..3673 | 10040 | 100 | Plus |
| stj-RD | 4866 | CG12295-RD | 809..2460 | 16..1667 | 8260 | 100 | Plus |
| stj-RC | 5825 | CG12295-RC | 418..2068 | 16..1666 | 8255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13817066..13817610 | 3037..3581 | 2725 | 100 | Plus |
| 2R | 25286936 | 2R | 13809914..13810364 | 992..1442 | 2255 | 100 | Plus |
| 2R | 25286936 | 2R | 13809273..13809670 | 595..992 | 1990 | 100 | Plus |
| 2R | 25286936 | 2R | 13807898..13808175 | 319..596 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 13816755..13816979 | 2813..3037 | 1125 | 100 | Plus |
| 2R | 25286936 | 2R | 13814378..13814582 | 2002..2206 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 13814643..13814787 | 2205..2349 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 13810477..13810619 | 1440..1582 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 13816561..13816702 | 2672..2813 | 710 | 100 | Plus |
| 2R | 25286936 | 2R | 13816385..13816504 | 2553..2672 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 13806602..13806718 | 16..132 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 13816202..13816313 | 2442..2553 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 13814077..13814188 | 1823..1934 | 545 | 99.1 | Plus |
| 2R | 25286936 | 2R | 13807726..13807836 | 209..319 | 540 | 99.1 | Plus |
| 2R | 25286936 | 2R | 13815555..13815648 | 2349..2442 | 470 | 100 | Plus |
| 2R | 25286936 | 2R | 13817888..13817980 | 3581..3673 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 13810751..13810836 | 1581..1666 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 13806797..13806878 | 133..214 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 13813799..13813880 | 1666..1747 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 13813940..13814015 | 1747..1822 | 380 | 100 | Plus |
| 2R | 25286936 | 2R | 13814242..13814314 | 1930..2002 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:49:57 has no hits.
BS11057.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-03 16:22:53 Download gff for
BS11057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stj-RB | 1130..4784 | 17..3671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:02 Download gff for
BS11057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stj-RB | 810..4464 | 17..3671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:30 Download gff for
BS11057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stj-RB | 810..4464 | 17..3671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:30 Download gff for
BS11057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13810753..13810836 | 1583..1666 | 100 | -> | Plus |
| 2R | 13813800..13813880 | 1667..1747 | 100 | -> | Plus |
| 2R | 13813941..13814015 | 1748..1822 | 100 | -> | Plus |
| 2R | 13814077..13814184 | 1823..1930 | 100 | -> | Plus |
| 2R | 13814243..13814314 | 1931..2002 | 100 | -> | Plus |
| 2R | 13814379..13814581 | 2003..2205 | 100 | -> | Plus |
| 2R | 13814644..13814786 | 2206..2348 | 100 | -> | Plus |
| 2R | 13815555..13815648 | 2349..2442 | 100 | -> | Plus |
| 2R | 13816203..13816313 | 2443..2553 | 100 | -> | Plus |
| 2R | 13816386..13816504 | 2554..2672 | 100 | -> | Plus |
| 2R | 13816562..13816701 | 2673..2812 | 100 | -> | Plus |
| 2R | 13816755..13816979 | 2813..3037 | 100 | -> | Plus |
| 2R | 13809275..13809669 | 597..991 | 100 | -> | Plus |
| 2R | 13806603..13806718 | 17..132 | 100 | -> | Plus |
| 2R | 13806797..13806878 | 133..214 | 100 | -> | Plus |
| 2R | 13807732..13807836 | 215..319 | 100 | -> | Plus |
| 2R | 13807899..13808175 | 320..596 | 100 | -> | Plus |
| 2R | 13809914..13810363 | 992..1441 | 100 | -> | Plus |
| 2R | 13810479..13810619 | 1442..1582 | 100 | -> | Plus |
| 2R | 13817067..13817609 | 3038..3580 | 100 | -> | Plus |
| 2R | 13817888..13817978 | 3581..3671 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:02 Download gff for
BS11057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9704260..9704484 | 2813..3037 | 100 | -> | Plus |
| arm_2R | 9701748..9701819 | 1931..2002 | 100 | -> | Plus |
| arm_2R | 9701884..9702086 | 2003..2205 | 100 | -> | Plus |
| arm_2R | 9702149..9702291 | 2206..2348 | 100 | -> | Plus |
| arm_2R | 9703060..9703153 | 2349..2442 | 100 | -> | Plus |
| arm_2R | 9703708..9703818 | 2443..2553 | 100 | -> | Plus |
| arm_2R | 9703891..9704009 | 2554..2672 | 100 | -> | Plus |
| arm_2R | 9704067..9704206 | 2673..2812 | 100 | -> | Plus |
| arm_2R | 9694108..9694223 | 17..132 | 100 | -> | Plus |
| arm_2R | 9694302..9694383 | 133..214 | 100 | -> | Plus |
| arm_2R | 9695237..9695341 | 215..319 | 100 | -> | Plus |
| arm_2R | 9695404..9695680 | 320..596 | 100 | -> | Plus |
| arm_2R | 9696780..9697174 | 597..991 | 100 | -> | Plus |
| arm_2R | 9697419..9697868 | 992..1441 | 100 | -> | Plus |
| arm_2R | 9697984..9698124 | 1442..1582 | 100 | -> | Plus |
| arm_2R | 9698258..9698341 | 1583..1666 | 100 | -> | Plus |
| arm_2R | 9701305..9701385 | 1667..1747 | 100 | -> | Plus |
| arm_2R | 9701446..9701520 | 1748..1822 | 100 | -> | Plus |
| arm_2R | 9701582..9701689 | 1823..1930 | 100 | -> | Plus |
| arm_2R | 9704572..9705114 | 3038..3580 | 100 | -> | Plus |
| arm_2R | 9705393..9705483 | 3581..3671 | 100 | | Plus |
BS11057.pep Sequence
Translation from 16 to 3672
> BS11057.pep
MAWSRLLAWWRLCLGLLSVLVCLAPCVNLQPAENINYNLVHSWADKLGME
LFHLGDFITRRKEVQESFKDAKVVSRNGASIVDSMAKEIEMMMDLKVSAV
RRIMDTAENTALSHQNDMADKMFSYYSAKEMLEPGDPVPPIPTPAPDMDK
DIGEPLIYVQPKVVVLEPRPEFHNTPVNFSVSSVHVPVNVFDRAPDVIKA
IQWSENLDQIFRDNYKNDPTLSWQFFGSSTGFMRQFPASKWRKDVPVDLY
DCRLRSWYMEAATSPKDIVILMDGSGSMLGQRLDIAKHVVNTILDTLGTN
DFVNIFTFDKEVSPVVPCFEDTLIQANLGNIRELKEGIELFRPKSIANYT
AALTKAFELLEETKLSSRGAQCNQAIMIIGDGAPENNREVFELHNWRDPP
YKPVRVFTYLIGKEVANWDDIRWMACENQGYYVHLSDTAEVREMVLNYIP
VMARPLVLGRHDHPVIWSQVYADIEDTKLSDYLWDINQCEYQKADVLEYW
QVHDRMLEPSEMHRRKYRRMKETWNQPVDSNVYQFMTTVSMPIYDRRENA
TRIANILGVAGTDVPINEIKKLLSPFTLGVNGYAFIVTNNGYVLFHPDFR
PIFQGYILKPAYNSVDMIEVELLDDDRPARDFNPVLMTIRDSIINQSTGS
KWMLVKNHFDEMKRVARVKRQYYWTAIKKTPFTLVISYPEQYGVSHMDIR
ADQEIHRISIKGTNLRSVFSGKRWKIHPDWLFCKHSNRTFKTPEIELLYF
LERMSEPGWRWPGSRSAMPPEHAAAMFCDRQLMQALVFDARVTGWFSNNT
SFNSKDDKGNEFKQRFGVTVAFLATHSGLTRWHEFHSNAAEESGVGETFS
QNNTRAIDEIWYKRAVDQHFVREESFVYSVPFDAGESNSEILVTASHAVF
HNEGGKTAPAAVVGFQFQHSALYKLFHNITGNACAVDDKDCYILDNNGYV
IISTRVHETGRFFGEVNGAIMKRLLEENVYRQVTVYDYQAVCFESKNDNN
ASSMLLSPLFHLLRVGKWLLHTALWYIVQLLQWAPGVSSHYADMYGDSND
TEPPPPEPHPDHHARNGNGHGKKDDDHWLRYLTLHRTRLKPCDMKRDLYT
LFNEKDNVVYNMTAHACERPFVVLPIPFSNLILLVIDQLCPRDGSVVLTV
NPQPIDYHLSVNDSLACYKQAREFNRMRPHSCISRHANESGIKLCGKACS
VYANLGLLLLCHILSRWL*
BS11057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stj-PB | 1218 | CG12295-PB | 1..1218 | 1..1218 | 6545 | 100 | Plus |
| stj-PD | 1237 | CG12295-PD | 1..1237 | 1..1218 | 6515 | 98.5 | Plus |
| stj-PC | 1271 | CG12295-PC | 1..1271 | 1..1218 | 6459 | 95.8 | Plus |
| CG4587-PO | 1260 | CG4587-PO | 32..1249 | 33..1214 | 1887 | 35.4 | Plus |
| CG4587-PN | 1260 | CG4587-PN | 32..1249 | 33..1214 | 1887 | 35.4 | Plus |
