Clone BS11058 Report

Search the DGRC for BS11058

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG12163-RC
Protein status:BS11058.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11058.3prime Sequence

864 bp (739 high quality bases) assembled on 2006-04-19

> BS11058.3prime
ATGGTCTAGAAAGCTTTCATGATAATGCTGTCGGTATGGTAGTAGCCTCC
ACCTCGGGATCCTTCTGCTCCCGGCCGGCCTCCTCCTGTTGCTGCCCCTT
CTCCTGACTCTTCTCGAAGTCATACGCACCCACCGATAGGAAATCGTCGA
GCCAACGCTTCTCATTTTCGTTCAGCTCCGTGGCGATTGTGGTGGTGGCT
ACGACCTCCTCTTCGTGCTTGTCCTCCACCTCTTCTGCCTTTTCTTCCAC
ATTATCAATGCTAATTGCCGTGGCCGTCTCATTAGTGGCGTCAGGTGGAC
TAAGCTTGGTGACTGCTATAGATGCGGTTAATACAGCAGGAGCTGCCGAA
TCCAGAGGGGCAGCCTCGGCAGGAGAAGGAGCAGCAGGAGAAGGTGCACG
AACAGGAGCCGCTGAAGCGGTTTTGGTCAGACTGACCTTCCGCCTCATAG
GTCCCAGGTTAGTGAGTATCTGTGACTCCAGATTGGCCATCTCTGCGTCG
CTCAGTTCTTTCCTCTGACCGCCATTAAAGATGCTATTACTCACATATTT
CTCGTTAAGCAGTCGCGCCTTCTCTGCCGGATCTCCGGCCACCGAGTTCA
CCGCTGGGTCGGTGCAATTGGAGGTAACCAGTTCGCGGTGCTTGTCGCCC
CACTGGGTGCGCAGCCAAGGCTTTTCCAGGATGACCAGGCGGCAGACTAT
GTCCGCTTCCGCCGGCTGTATTGCCTTTGTGTCTAGCGCGTTTAACAGGA
TCTCATAGCGCACTCCGGCGGTGATTTCCCGAAAGGCGTCGATGATATTC
ACAAAGTTCATCGACAGTGGCAGGAAGGTCATCGCAATGTTCTGGACACC
AATCATGTTGGGTG

BS11058.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-PA 1845 CG12163-RA 206..527 864..543 1560 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-RC 1425 CG12163-RC 420..1268 864..16 4215 99.8 Minus
CG12163-RA 2299 CG12163-RA 420..741 864..543 1580 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5243309..5244157 16..864 4215 99.8 Plus
Blast to na_te.dros performed on 2015-02-09 03:38:45 has no hits.

BS11058.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:27 Download gff for BS11058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-PA 206..527 543..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:20 Download gff for BS11058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-PA 206..527 543..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:57:03 Download gff for BS11058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 420..1274 8..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:11 Download gff for BS11058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 420..1274 8..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:11 Download gff for BS11058.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5243303..5244157 8..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:57:03 Download gff for BS11058.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1069025..1069879 8..864 99   Plus

BS11058.5prime Sequence

889 bp (807 high quality bases) assembled on 2006-04-19

> BS11058.5prime
GAAGTTATCAGTCGACATGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAAT
AGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGC
CAATCTGGAGTCACAGATACTCACTAACCTGGGACCTATGAGGCGGAAGG
TCAGTCTGACCAAAACCGCTTCAGCGGCTCCTGTTCGTGCACCTTCTCCT
GCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGCTCCTGC
TGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGTCCACCTGACGCCA
CTAATGAGACGGCCACGGCAATTAGCATTGATAATGTGGAAGAAAAAGCA
GAAGAGGTGGAGGAACAGCACGAAGAGGAGGTCGTAGCC

BS11058.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-PA 1845 CG12163-RA 1..527 17..543 2635 100 Plus
CG12163-PB 1428 CG12163-RB 1..108 17..124 540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 06:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-RC 1425 CG12163-RC 213..1087 15..889 4330 99.7 Plus
CG12163-RA 2299 CG12163-RA 213..741 15..543 2645 100 Plus
CG12163-RB 1882 CG12163-RB 213..322 15..124 550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 06:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5243490..5244256 889..123 3790 99.6 Minus
3R 32079331 3R 5251424..5251533 124..15 550 100 Minus
Blast to na_te.dros performed on 2015-02-10 06:54:02 has no hits.

BS11058.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:28 Download gff for BS11058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-PA 1..527 17..543 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:21 Download gff for BS11058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-PA 1..527 17..543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:05:29 Download gff for BS11058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 213..1087 15..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:41:49 Download gff for BS11058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 213..1087 15..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:41:49 Download gff for BS11058.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5243490..5244254 125..889 99 <- Minus
3R 5251424..5251533 15..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:05:29 Download gff for BS11058.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1069212..1069976 125..889 99 <- Minus
arm_3R 1077146..1077255 15..124 100   Minus

BS11058.complete Sequence

1085 bp assembled on 2006-11-01

GenBank Submission: KX801938

> BS11058.complete
GAAGTTATCAGTCGACATGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAAT
AGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGC
CAATCTGGAGTCACAGATACTCACTAACCTGGGACCTATGAGGCGGAAGG
TCAGTCTGACCAAAACCGCTTCAGCGGCTCCTGTTCGTGCACCTTCTCCT
GCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGCTCCTGC
TGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGTCCACCTGACGCCA
CTAATGAGACGGCCACGGCAATTAGCATTGATAATGTGGAAGAAAAGGCA
GAAGAGGTGGAGGACAAGCACGAAGAGGAGGTCGTAGCCACCACCACAAT
CGCCACGGAGCTGAACGAAAATGAGAAGCGTTGGCTCGACGATTTCCTAT
CGGTGGGTGCGTATGACTTCGAGAAGAGTCAGGAGAAGGGGCAGCAACAG
GAGGAGGCCGGCCGGGAGCAGAAGGATCCCGAGGTGGAGGCTACTACCAT
ACCGACAGCATTATCATGAAAGCTTTCTAGACCAT

BS11058.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-RC 1053 CG12163-PC 1..1053 17..1069 5265 100 Plus
CG12163-RA 1845 CG12163-PA 1..527 17..543 2635 100 Plus
CG12163-RB 1428 CG12163-PB 1..108 17..124 540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-RC 1425 CG12163-RC 213..1268 15..1070 5280 100 Plus
CG12163-RA 2299 CG12163-RA 213..741 15..543 2645 100 Plus
CG12163-RB 1882 CG12163-RB 213..322 15..124 550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5243309..5244256 1070..123 4740 100 Minus
3R 32079331 3R 5251424..5251533 124..15 550 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:16:52 has no hits.

BS11058.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:38 Download gff for BS11058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RA 1..527 17..543 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:04 Download gff for BS11058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RA 214..742 15..543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:54 Download gff for BS11058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 215..1266 17..1068 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:38 Download gff for BS11058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RA 214..742 15..543 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:44 Download gff for BS11058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 215..1266 17..1068 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:44 Download gff for BS11058.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5243311..5244254 125..1068 100 <- Minus
3R 5251424..5251531 17..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:54 Download gff for BS11058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1077146..1077253 17..124 100   Minus
arm_3R 1069033..1069976 125..1068 100 <- Minus

BS11058.pep Sequence

Translation from 16 to 1068

> BS11058.pep
MRLFAAATVALVLLLGQAAGEELAEERAGQAQGDAESTESSETTTDQAVS
EPPITLVHVLNPGEREYLSPNLIGVQNIAMTFLPLSMNFVNIIDAFREIT
AGVRYEILLNALDTKAIQPAEADIVCRLVILEKPWLRTQWGDKHRELVTS
NCTDPAVNSVAGDPAEKARLLNEKYVSNSIFNGGQRKELSDAEMANLESQ
ILTNLGPMRRKVSLTKTASAAPVRAPSPAAPSPAEAAPLDSAAPAVLTAS
IAVTKLSPPDATNETATAISIDNVEEKAEEVEDKHEEEVVATTTIATELN
ENEKRWLDDFLSVGAYDFEKSQEKGQQQEEAGREQKDPEVEATTIPTALS
*

BS11058.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-PC 350 CG12163-PC 1..350 1..350 1746 100 Plus
CG12163-PA 614 CG12163-PA 1..179 1..179 888 98.9 Plus
CG12163-PB 475 CG12163-PB 1..138 1..157 184 37.6 Plus