Clone Sequence Records
BS11058.3prime Sequence
864 bp (739 high quality bases) assembled on 2006-04-19
> BS11058.3prime
ATGGTCTAGAAAGCTTTCATGATAATGCTGTCGGTATGGTAGTAGCCTCC
ACCTCGGGATCCTTCTGCTCCCGGCCGGCCTCCTCCTGTTGCTGCCCCTT
CTCCTGACTCTTCTCGAAGTCATACGCACCCACCGATAGGAAATCGTCGA
GCCAACGCTTCTCATTTTCGTTCAGCTCCGTGGCGATTGTGGTGGTGGCT
ACGACCTCCTCTTCGTGCTTGTCCTCCACCTCTTCTGCCTTTTCTTCCAC
ATTATCAATGCTAATTGCCGTGGCCGTCTCATTAGTGGCGTCAGGTGGAC
TAAGCTTGGTGACTGCTATAGATGCGGTTAATACAGCAGGAGCTGCCGAA
TCCAGAGGGGCAGCCTCGGCAGGAGAAGGAGCAGCAGGAGAAGGTGCACG
AACAGGAGCCGCTGAAGCGGTTTTGGTCAGACTGACCTTCCGCCTCATAG
GTCCCAGGTTAGTGAGTATCTGTGACTCCAGATTGGCCATCTCTGCGTCG
CTCAGTTCTTTCCTCTGACCGCCATTAAAGATGCTATTACTCACATATTT
CTCGTTAAGCAGTCGCGCCTTCTCTGCCGGATCTCCGGCCACCGAGTTCA
CCGCTGGGTCGGTGCAATTGGAGGTAACCAGTTCGCGGTGCTTGTCGCCC
CACTGGGTGCGCAGCCAAGGCTTTTCCAGGATGACCAGGCGGCAGACTAT
GTCCGCTTCCGCCGGCTGTATTGCCTTTGTGTCTAGCGCGTTTAACAGGA
TCTCATAGCGCACTCCGGCGGTGATTTCCCGAAAGGCGTCGATGATATTC
ACAAAGTTCATCGACAGTGGCAGGAAGGTCATCGCAATGTTCTGGACACC
AATCATGTTGGGTG
BS11058.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-PA | 1845 | CG12163-RA | 206..527 | 864..543 | 1560 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-RC | 1425 | CG12163-RC | 420..1268 | 864..16 | 4215 | 99.8 | Minus |
CG12163-RA | 2299 | CG12163-RA | 420..741 | 864..543 | 1580 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5243309..5244157 | 16..864 | 4215 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:38:45 has no hits.
BS11058.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:27 Download gff for
BS11058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-PA | 206..527 | 543..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:20 Download gff for
BS11058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-PA | 206..527 | 543..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:57:03 Download gff for
BS11058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 420..1274 | 8..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:11 Download gff for
BS11058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 420..1274 | 8..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:11 Download gff for
BS11058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5243303..5244157 | 8..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:57:03 Download gff for
BS11058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1069025..1069879 | 8..864 | 99 | | Plus |
BS11058.5prime Sequence
889 bp (807 high quality bases) assembled on 2006-04-19
> BS11058.5prime
GAAGTTATCAGTCGACATGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAAT
AGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGC
CAATCTGGAGTCACAGATACTCACTAACCTGGGACCTATGAGGCGGAAGG
TCAGTCTGACCAAAACCGCTTCAGCGGCTCCTGTTCGTGCACCTTCTCCT
GCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGCTCCTGC
TGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGTCCACCTGACGCCA
CTAATGAGACGGCCACGGCAATTAGCATTGATAATGTGGAAGAAAAAGCA
GAAGAGGTGGAGGAACAGCACGAAGAGGAGGTCGTAGCC
BS11058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-PA | 1845 | CG12163-RA | 1..527 | 17..543 | 2635 | 100 | Plus |
CG12163-PB | 1428 | CG12163-RB | 1..108 | 17..124 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 06:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-RC | 1425 | CG12163-RC | 213..1087 | 15..889 | 4330 | 99.7 | Plus |
CG12163-RA | 2299 | CG12163-RA | 213..741 | 15..543 | 2645 | 100 | Plus |
CG12163-RB | 1882 | CG12163-RB | 213..322 | 15..124 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 06:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5243490..5244256 | 889..123 | 3790 | 99.6 | Minus |
3R | 32079331 | 3R | 5251424..5251533 | 124..15 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 06:54:02 has no hits.
BS11058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:28 Download gff for
BS11058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-PA | 1..527 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:21 Download gff for
BS11058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-PA | 1..527 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:05:29 Download gff for
BS11058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 213..1087 | 15..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:41:49 Download gff for
BS11058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 213..1087 | 15..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:41:49 Download gff for
BS11058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5243490..5244254 | 125..889 | 99 | <- | Minus |
3R | 5251424..5251533 | 15..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:05:29 Download gff for
BS11058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1069212..1069976 | 125..889 | 99 | <- | Minus |
arm_3R | 1077146..1077255 | 15..124 | 100 | | Minus |
BS11058.complete Sequence
1085 bp assembled on 2006-11-01
GenBank Submission: KX801938
> BS11058.complete
GAAGTTATCAGTCGACATGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAAT
AGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGC
CAATCTGGAGTCACAGATACTCACTAACCTGGGACCTATGAGGCGGAAGG
TCAGTCTGACCAAAACCGCTTCAGCGGCTCCTGTTCGTGCACCTTCTCCT
GCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGCTCCTGC
TGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGTCCACCTGACGCCA
CTAATGAGACGGCCACGGCAATTAGCATTGATAATGTGGAAGAAAAGGCA
GAAGAGGTGGAGGACAAGCACGAAGAGGAGGTCGTAGCCACCACCACAAT
CGCCACGGAGCTGAACGAAAATGAGAAGCGTTGGCTCGACGATTTCCTAT
CGGTGGGTGCGTATGACTTCGAGAAGAGTCAGGAGAAGGGGCAGCAACAG
GAGGAGGCCGGCCGGGAGCAGAAGGATCCCGAGGTGGAGGCTACTACCAT
ACCGACAGCATTATCATGAAAGCTTTCTAGACCAT
BS11058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-RC | 1053 | CG12163-PC | 1..1053 | 17..1069 | 5265 | 100 | Plus |
CG12163-RA | 1845 | CG12163-PA | 1..527 | 17..543 | 2635 | 100 | Plus |
CG12163-RB | 1428 | CG12163-PB | 1..108 | 17..124 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-RC | 1425 | CG12163-RC | 213..1268 | 15..1070 | 5280 | 100 | Plus |
CG12163-RA | 2299 | CG12163-RA | 213..741 | 15..543 | 2645 | 100 | Plus |
CG12163-RB | 1882 | CG12163-RB | 213..322 | 15..124 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5243309..5244256 | 1070..123 | 4740 | 100 | Minus |
3R | 32079331 | 3R | 5251424..5251533 | 124..15 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:16:52 has no hits.
BS11058.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:38 Download gff for
BS11058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RA | 1..527 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:04 Download gff for
BS11058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RA | 214..742 | 15..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:54 Download gff for
BS11058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 215..1266 | 17..1068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:38 Download gff for
BS11058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RA | 214..742 | 15..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:44 Download gff for
BS11058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 215..1266 | 17..1068 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:44 Download gff for
BS11058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5243311..5244254 | 125..1068 | 100 | <- | Minus |
3R | 5251424..5251531 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:54 Download gff for
BS11058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1077146..1077253 | 17..124 | 100 | | Minus |
arm_3R | 1069033..1069976 | 125..1068 | 100 | <- | Minus |
BS11058.pep Sequence
Translation from 16 to 1068
> BS11058.pep
MRLFAAATVALVLLLGQAAGEELAEERAGQAQGDAESTESSETTTDQAVS
EPPITLVHVLNPGEREYLSPNLIGVQNIAMTFLPLSMNFVNIIDAFREIT
AGVRYEILLNALDTKAIQPAEADIVCRLVILEKPWLRTQWGDKHRELVTS
NCTDPAVNSVAGDPAEKARLLNEKYVSNSIFNGGQRKELSDAEMANLESQ
ILTNLGPMRRKVSLTKTASAAPVRAPSPAAPSPAEAAPLDSAAPAVLTAS
IAVTKLSPPDATNETATAISIDNVEEKAEEVEDKHEEEVVATTTIATELN
ENEKRWLDDFLSVGAYDFEKSQEKGQQQEEAGREQKDPEVEATTIPTALS
*
BS11058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-PC | 350 | CG12163-PC | 1..350 | 1..350 | 1746 | 100 | Plus |
CG12163-PA | 614 | CG12163-PA | 1..179 | 1..179 | 888 | 98.9 | Plus |
CG12163-PB | 475 | CG12163-PB | 1..138 | 1..157 | 184 | 37.6 | Plus |