Clone Sequence Records
BS11062.3prime Sequence
768 bp (764 high quality bases) assembled on 2006-04-19
> BS11062.3prime
ATGGTCTAGAAAGCTTTTAGCGTGTGGTTGCTGCCGTGTTGCTGCCGCGA
AATGTGCTGAAGAACCGCAACAACAGCGACTGATCCTCGCCATTCCCATC
CAGATGGCGGTCCAGACGCCACCCAATACTCGGTAGCCACCACAAGGGCG
TATAGCCATCTGGGTTGCTGCTGCTGTTGGGAGTTGTGGCGGCGGTTCCT
GCTGATTCCGTACTTGCTGCAGATTCGACAATTCCTTCCGGCTCTACGGT
CAAGCGATCTTCTCTAATTATTTTACTATTTCTATAGCTACGATTAGTAA
TACTAAAATGTTTTACTTCTGTTGATGCTGACGTTGCTGTCAAGCTGATT
TCATTAACCTGGCCCGATGTAGCAACTGTCTCTGTGGTGGCTGCTGTTTC
AGATGTGCTCTGTCCTAATTGCGGCATCACCTTTGACCAATTTGTGTATG
CTGTTGTGGTGGTGGTGGTGGTGGTGGCATCCTCAGTTGATGTTGATGTT
AACGCTGAAGTTATTTCTGTACTGGTTGGCTCAAGCTGTTGTTTTTGTGG
CTGATGCTGCTGTCGTTGCTTGCCCTTTACCAGCTCGTTGATGAGCCGCA
GTTCCTGTTGGACATGAATTTCACTGGTAGCCTTATGTCCCCCATCATCA
TCGTCGTCGCCACGTCCGCCAATTGTATTTGTCATTAAATTGTCATTGTC
ACTCGCCGGCATATCGGACTGCTCGATAGGATCACCGGGAGTGCTGCTGC
TGGGCTCTGGTGTTGCCC
BS11062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9559-PA | 2193 | fog-RA | 1443..2193 | 767..17 | 3755 | 100 | Minus |
| CG9559-PB | 2193 | fog-RB | 1443..2193 | 767..17 | 3755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fog-RF | 5256 | CG9559-RF | 1776..2530 | 767..13 | 3775 | 100 | Minus |
| fog-RE | 3825 | CG9559-RE | 2190..2944 | 767..13 | 3775 | 100 | Minus |
| fog-RD | 3188 | CG9559-RD | 1553..2307 | 767..13 | 3775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22827043..22827797 | 13..767 | 3775 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2612 | 611..313 | 233 | 58.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6899 | 610..535 | 145 | 68.8 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3249..3321 | 610..535 | 129 | 67.1 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 517..574 | 543..485 | 121 | 69.5 | Minus |
BS11062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:31 Download gff for
BS11062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9559-PA | 1442..2193 | 17..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:26 Download gff for
BS11062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9559-PB | 1442..2193 | 17..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:52:08 Download gff for
BS11062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fog-RD | 1510..2265 | 13..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:18 Download gff for
BS11062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fog-RD | 1552..2307 | 13..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:18 Download gff for
BS11062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22827043..22827797 | 13..768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:52:08 Download gff for
BS11062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22228879..22229633 | 13..768 | 99 | | Plus |
BS11062.5prime Sequence
832 bp (799 high quality bases) assembled on 2006-04-19
> BS11062.5prime
GAAGTTATCAGTCGACATGTCTCCGCCCAATTGTCTGCTGGCTGTTCTGG
CGCTCACGGTTTTCATAGGGGCCAACAACGCCCTGCCTATCACCTCGCGC
CCCATCGAGGGGAATGTCCAGAGAATGGTGTGGGAGGATTGGGTGAACCT
GGACCCAGAGCAGAGAAACCTTACCAAGGAGAAGAAGATAACCGCCAAGT
CAATATTCACGCTACCGTTTCGCCACTGTCCGCAGGGTCATACGCTGTTC
AACCAGCTTTGCATCCCACAGTCCAACATTGATCCCACGGATCTGGTCAA
ACAGGAACTCATCTTGGCCGGGGGCTCCAATGGCAGTCCCCCACCGCCAC
CCATTGGAGACTATGACTACGGCGACGATGAGGAGAGTGAAGAAATCGTG
TACGATCTTTCGGTCATACCTACAGCCATGCAGGATGGTTTACCGCCCAG
CGTTGGCACCGGGGATCAAGCCCTGCCCAGCGAGGATGCACCACTGAAAT
TTAATATTTTTGAGAAGAAATTCCCCACGGGCACGGGTGAGCACGAGGAG
ATGCCACTACCGCCGGACATGGCGGCTGCAACATATGCCAAAAACATCAG
TACCACACCAGAAACATCAACTAGCATCACGCCCACGTCAACGACGACTT
TTGCCGTACCGTCTGTTCCTTCGGGAGAGGCCAGTAACCGCATTCCCGGC
GGCGTCGATTTGCTGGCGGCCCCCAGTGATGCCTTCTCCACATCGACAAC
ACTTAGCATGCCGACCAGCAACACCACCACCACCAGCAACAAGGACATTG
GCCAAGTAGAGTCCATTGTTTTGCCAGCGGAT
BS11062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9559-PA | 2193 | fog-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
| CG9559-PB | 2193 | fog-RB | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fog-RF | 5256 | CG9559-RF | 334..1149 | 17..832 | 4080 | 100 | Plus |
| fog-RE | 3825 | CG9559-RE | 748..1563 | 17..832 | 4080 | 100 | Plus |
| fog-RD | 3188 | CG9559-RD | 111..926 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22828424..22829239 | 832..17 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:33:42 has no hits.
BS11062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:32 Download gff for
BS11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9559-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:27 Download gff for
BS11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9559-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:32:35 Download gff for
BS11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fog-RD | 64..884 | 10..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:01 Download gff for
BS11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fog-RD | 106..926 | 10..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:01 Download gff for
BS11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22828424..22829244 | 10..832 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:32:35 Download gff for
BS11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22230260..22231080 | 10..832 | 99 | | Minus |
BS11062.complete Sequence
2225 bp assembled on 2008-08-14
GenBank Submission: FJ636753
> BS11062.complete
GAAGTTATCAGTCGACATGTCTCCGCCCAATTGTCTGCTGGCTGTTCTGG
CGCTCACGGTTTTCATAGGGGCCAACAACGCCCTGCCTATCACCTCGCGC
CCCATCGAGGGGAATGTCCAGAGAATGGTGTGGGAGGATTGGGTGAACCT
GGACCCAGAGCAGAGAAACCTTACCAAGGAGAAGAAGATAACCGCCAAGT
CAATATTCACGCTACCGTTTCGCCACTGTCCGCAGGGTCATACGCTGTTC
AACCAGCTTTGCATCCCACAGTCCAACATTGATCCCACGGATCTGGTCAA
ACAGGAACTCATCTTGGCCGGGGGCTCCAATGGCAGTCCCCCACCGCCAC
CCATTGGAGACTATGACTACGGCGACGATGAGGAGAGTGAAGAAATCGTG
TACGATCTTTCGGTCATACCTACAGCCATGCAGGATGGTTTACCGCCCAG
CGTTGGCACCGGGGATCAAGCCCTGCCCAGCGAGGATGCACCACTGAAAT
TTAATATTTTTGAGAAGAAATTCCCCACGGGCACGGGTGAGCACGAGGAG
ATGCCACTACCGCCGGACATGGCGGCTGCAACATATGCCAAAAACATCAG
TACCACACCAGAAACATCAACTAGCATCACGCCCACGTCAACGACGACTT
TTGCCGTACCGTCTGTTCCTTCGGGAGAGGCCAGTAACCGCATTCCCGGC
GGCGTCGATTTGCTGGCGGCCCCCAGTGATGCCTTCTCCACATCGACAAC
ACTTAGCATGCCGACCAGCAACACCACCACCACCAGCAACAAGGACATTG
GCCAAGTAGAGTCCATTGTTTTGCCAGCGGATCAGGAGCACGATGGCCTT
GTGCACCTGGTGACCAGTTCTCTTTCCGACAATGACAGTGATGACTCCTC
CACCACATTGAATGGATTTAACGCGGAGGCGGATCTGGCTCAACTGCTCA
AGGTCGACGCCTTTTGGCCGGTCTACGATGGCAGCATTGAGTTGTTGCCG
CCGCTTTTCAGTCATCGCAAGGTGGCGCCGCCGTTAAGCGCAGACCAGGA
TGTAAAAACCAAACACGCGGTTGATGCTGCAGAGAAGGTAGGAGCGGAGC
TGGAAGAGGAGGTGGGAGAGGAGGAGGTGACCGCTACGGACATATTACCA
AGTGAGGAAGACGAGTATACCACAGAGACGGCAACAACCACAGGGGACAC
AACGGTTGCGGAGGCGTCAATGGATACATCGACTGCCACCTCCACCTCTG
GCCAATCATCACCACATCCGCCAGAAGAACCCGAGATAGATGAACGTGAA
AATCGCCTGGTCTTGATAAAATCGAAAGTGCAACCGGTTCAGTTAACGAC
AACAACTTCGGCAACTGCAACAACTGCAGCTGATGTTGCTAATTCAAGCT
CCTCAACTGACCGGTTTCACTATCAGCATTTTGTCGAAGATGAGAGCAGT
ACTACGACGGCAACACCAGAGCCCAGCAGCAGCACTCCCGGTGATCCTAT
CGAGCAGTCCGATATGCCGGCGAGTGACAATGACAATTTAATGACAAATA
CAATTGGCGGACGTGGCGACGACGATGATGATGGGGGACATAAGGCTACC
AGTGAAATTCATGTCCAACAGGAACTGCGGCTCATCAACGAGCTGGTAAA
GGGCAAGCAACGACAGCAGCATCAGCCACAAAAACAACAGCTTGAGCCAA
CCAGTACAGAAATAACTTCAGCGTTAACATCAACATCAACTGAGGATGCC
ACCACCACCACCACCACCACAACAGCATACACAAATTGGTCAAAGGTGAT
GCCGCAATTAGGACAGAGCACATCTGAAACAGCAGCCACCACAGAGACAG
TTGCTACATCGGGCCAGGTTAATGAAATCAGCTTGACAGCAACGTCAGCA
TCAACAGAAGTAAAACATTTTAGTATTACTAATCGTAGCTATAGAAATAG
TAAAATAATTAGAGAAGATCGCTTGACCGTAGAGCCGGAAGGAATTGTCG
AATCTGCAGCAAGTACGGAATCAGCAGGAACCGCCGCCACAACTCCCAAC
AGCAGCAGCAACCCAGATGGCTATACGCCCTTGTGGTGGCTACCGAGTAT
TGGGTGGCGTCTGGACCGCCATCTGGATGGGAATGGCGAGGATCAGTCGC
TGTTGTTGCGGTTCTTCAGCACATTTCGCGGCAGCAACACGGCAGCAACC
ACACGCTAAAAGCTTTCTAGACCAT
BS11062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fog-RF | 2193 | CG9559-PF | 1..2193 | 17..2209 | 10965 | 100 | Plus |
| fog-RE | 2193 | CG9559-PE | 1..2193 | 17..2209 | 10965 | 100 | Plus |
| fog-RD | 2193 | CG9559-PD | 1..2193 | 17..2209 | 10965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fog-RF | 5256 | CG9559-RF | 334..2530 | 17..2213 | 10985 | 100 | Plus |
| fog-RE | 3825 | CG9559-RE | 748..2944 | 17..2213 | 10985 | 100 | Plus |
| fog-RD | 3188 | CG9559-RD | 111..2307 | 17..2213 | 10985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22827043..22829239 | 2213..17 | 10985 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2612 | 1615..1913 | 233 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6899 | 1616..1691 | 145 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2639 | 1170..1382 | 123 | 55.2 | Plus |
BS11062.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:05 Download gff for
BS11062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fog-RB | 845..3046 | 10..2213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:40 Download gff for
BS11062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fog-RD | 69..2259 | 17..2207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:38 Download gff for
BS11062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fog-RB | 850..3040 | 17..2207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:24 Download gff for
BS11062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fog-RD | 111..2301 | 17..2207 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:24 Download gff for
BS11062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22827049..22829239 | 17..2207 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:40 Download gff for
BS11062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22228885..22231075 | 17..2207 | 100 | | Minus |
BS11062.pep Sequence
Translation from 16 to 2208
> BS11062.pep
MSPPNCLLAVLALTVFIGANNALPITSRPIEGNVQRMVWEDWVNLDPEQR
NLTKEKKITAKSIFTLPFRHCPQGHTLFNQLCIPQSNIDPTDLVKQELIL
AGGSNGSPPPPPIGDYDYGDDEESEEIVYDLSVIPTAMQDGLPPSVGTGD
QALPSEDAPLKFNIFEKKFPTGTGEHEEMPLPPDMAAATYAKNISTTPET
STSITPTSTTTFAVPSVPSGEASNRIPGGVDLLAAPSDAFSTSTTLSMPT
SNTTTTSNKDIGQVESIVLPADQEHDGLVHLVTSSLSDNDSDDSSTTLNG
FNAEADLAQLLKVDAFWPVYDGSIELLPPLFSHRKVAPPLSADQDVKTKH
AVDAAEKVGAELEEEVGEEEVTATDILPSEEDEYTTETATTTGDTTVAEA
SMDTSTATSTSGQSSPHPPEEPEIDERENRLVLIKSKVQPVQLTTTTSAT
ATTAADVANSSSSTDRFHYQHFVEDESSTTTATPEPSSSTPGDPIEQSDM
PASDNDNLMTNTIGGRGDDDDDGGHKATSEIHVQQELRLINELVKGKQRQ
QHQPQKQQLEPTSTEITSALTSTSTEDATTTTTTTTAYTNWSKVMPQLGQ
STSETAATTETVATSGQVNEISLTATSASTEVKHFSITNRSYRNSKIIRE
DRLTVEPEGIVESAASTESAGTAATTPNSSSNPDGYTPLWWLPSIGWRLD
RHLDGNGEDQSLLLRFFSTFRGSNTAATTR*
BS11062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fog-PF | 730 | CG9559-PF | 1..730 | 1..730 | 3760 | 100 | Plus |
| fog-PE | 730 | CG9559-PE | 1..730 | 1..730 | 3760 | 100 | Plus |
| fog-PD | 730 | CG9559-PD | 1..730 | 1..730 | 3760 | 100 | Plus |
| fog-PC | 730 | CG9559-PC | 1..730 | 1..730 | 3760 | 100 | Plus |
| fog-PB | 730 | CG9559-PB | 1..730 | 1..730 | 3760 | 100 | Plus |
