Clone BS11063 Report

Search the DGRC for BS11063

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG14302-RA
Protein status:BS11063.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11063.5prime Sequence

246 bp (245 high quality bases) assembled on 2006-04-19

> BS11063.5prime
GAAGTTATCAGTCGACATGAAATTCTTCAACCTGCTGTTTAGCCTCTGTC
TGGCCTTCATGCTGTGCACCTCGTGGGTGTCGGCTTTCTCCAGTCTTGCC
ACCCCGGAGCCAACTCCGCCAACTGGTGCTCCCGTCGATGGTACGACTAG
CACGGGATTCTCTGGTCCGCCGCAGGCTGAGACCACAAATGCCACGCCAG
AAACGTCGACCATCTATCCCATTTACGGATAGAAGCTTTCTAGACC

BS11063.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-PA 216 CG14302-RA 1..216 17..232 1080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-RA 281 CG14302-RA 20..241 11..232 1095 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18732786..18732994 24..232 1045 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:12:56 has no hits.

BS11063.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:35 Download gff for BS11063.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-PA 1..216 17..232 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:30 Download gff for BS11063.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-PA 1..216 17..232 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:56:42 Download gff for BS11063.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 1..221 12..232 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:45 Download gff for BS11063.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 20..241 11..232 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:45 Download gff for BS11063.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18732781..18732994 18..232 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:56:42 Download gff for BS11063.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14558503..14558716 18..232 98   Plus

BS11063.3prime Sequence

246 bp (245 high quality bases) assembled on 2006-04-19

> BS11063.3prime
ATGGTCTAGAAAGCTTCTATCCGTAAATGGGATAGATGGTCGACGTTTCT
GGCGTGGCATTTGTGGTCTCAGCCTGCGGCGGACCAGAGAATCCCGTGCT
AGTCGTACCATCGACGGGAGCACCAGTTGGCGGAGTTGGCTCCGGGGTGG
CAAGACTGGAGAAAGCCGACACCCACGAGGTGCACAGCATGAAGGCCAGA
CAGAGGCTAAACAGCAGGTTGAAGAATTTCATGTCGACTGATAACT

BS11063.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-PA 216 CG14302-RA 1..216 232..17 1080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-RA 281 CG14302-RA 20..241 238..17 1095 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18732786..18732994 225..17 1045 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:27:45 has no hits.

BS11063.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:33 Download gff for BS11063.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-PA 1..216 17..232 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:28 Download gff for BS11063.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-PA 1..216 17..232 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:15 Download gff for BS11063.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 1..221 17..237 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:44 Download gff for BS11063.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 20..241 17..238 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:44 Download gff for BS11063.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18732781..18732994 17..231 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:15 Download gff for BS11063.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14558503..14558716 17..231 98   Minus

BS11063.complete Sequence

248 bp assembled on 2006-11-01

GenBank Submission: FJ636754

> BS11063.complete
GAAGTTATCAGTCGACATGAAATTCTTCAACCTGCTGTTTAGCCTCTGTC
TGGCCTTCATGCTGTGCACCTCGTGGGTGTCGGCTTTCTCCAGTCTTGCC
ACCCCGGAGCCAACTCCGCCAACTGGTGCTCCCGTCGATGGTACGACTAG
CACGGGATTCTCTGGTCCGCCGCAGGCTGAGACCACAAATGCCACGCCAG
AAACGTCGACCATCTATCCCATTTACGGATAGAAGCTTTCTAGACCAT

BS11063.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-RA 216 CG14302-PA 1..216 17..232 1080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-RA 281 CG14302-RA 20..241 11..232 1095 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18732786..18732994 24..232 1045 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:11:00 has no hits.

BS11063.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:39 Download gff for BS11063.complete
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 1..216 17..232 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:32 Download gff for BS11063.complete
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 1..221 12..232 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:15 Download gff for BS11063.complete
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 6..221 17..232 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:40 Download gff for BS11063.complete
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 1..221 12..232 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:47 Download gff for BS11063.complete
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 26..241 17..232 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:47 Download gff for BS11063.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18732780..18732994 17..232 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:15 Download gff for BS11063.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14558502..14558716 17..232 98   Plus

BS11063.pep Sequence

Translation from 16 to 231

> BS11063.pep
MKFFNLLFSLCLAFMLCTSWVSAFSSLATPEPTPPTGAPVDGTTSTGFSG
PPQAETTNATPETSTIYPIYG*

BS11063.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-PA 71 CG14302-PA 1..71 1..71 381 100 Plus