Clone Sequence Records
BS11068.3prime Sequence
237 bp (236 high quality bases) assembled on 2006-04-19
> BS11068.3prime
ATGGTCTAGAAAGCTTCTAGGATCCCACGATGATGTTGTTAATGGGAATG
TGAATCAGCTTGACGAAGAAGCCGATGAAGCCCATGATGGCGAAGCCCAC
GGCGGTGGCGATGGCGATTTTCTGGAACTCCTTGCGGTCGGGTTTTGTGC
AGCGCTTCACCAGGCGGATTGAGTCCTTGGCGAAGGCGCGTCCGGGTTCG
GCGAATTTGACAACCTTGTCCATGTCGACTGATAACT
BS11068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-PA | 207 | CG8860-RA | 1..207 | 223..17 | 1035 | 100 | Minus |
CG14214-PA | 207 | CG14214-RA | 1..200 | 223..24 | 475 | 89.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-RA | 420 | CG8860-RA | 110..318 | 223..15 | 1045 | 100 | Minus |
Sec61gamma-RC | 537 | CG14214-RC | 26..228 | 226..24 | 700 | 89.7 | Minus |
Sec61gamma-RB | 792 | CG14214-RB | 158..360 | 226..24 | 700 | 89.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12179585..12179793 | 15..223 | 1045 | 100 | Plus |
X | 23542271 | X | 19643884..19644086 | 226..24 | 700 | 89.7 | Minus |
2R | 25286936 | 2R | 20512745..20512877 | 25..157 | 200 | 76.7 | Plus |
Blast to na_te.dros performed 2015-02-13 09:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 3141..3178 | 51..15 | 106 | 78.9 | Minus |
BS11068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:44 Download gff for
BS11068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-PA | 1..207 | 17..223 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:42 Download gff for
BS11068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-PA | 1..207 | 17..223 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:55:25 Download gff for
BS11068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..318 | 15..223 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:00:45 Download gff for
BS11068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..318 | 15..223 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:00:45 Download gff for
BS11068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12179585..12179791 | 15..221 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:55:25 Download gff for
BS11068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8067090..8067296 | 15..221 | 100 | <- | Plus |
BS11068.5prime Sequence
237 bp (236 high quality bases) assembled on 2006-04-19
> BS11068.5prime
GAAGTTATCAGTCGACATGGACAAGGTTGTCAAATTCGCCGAACCCGGAC
GCGCCTTCGCCAAGGACTCAATCCGCCTGGTGAAGCGCTGCACAAAACCC
GACCGCAAGGAGTTCCAGAAAATCGCCATCGCCACCGCCGTGGGCTTCGC
CATCATGGGCTTCATCGGCTTCTTCGTCAAGCTGATTCACATTCCCATTA
ACAACATCATCGTGGGATCCTAGAAGCTTTCTAGACC
BS11068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-PA | 207 | CG8860-RA | 1..207 | 17..223 | 1035 | 100 | Plus |
CG14214-PA | 207 | CG14214-RA | 1..200 | 17..216 | 475 | 89.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-RA | 420 | CG8860-RA | 110..318 | 17..225 | 1045 | 100 | Plus |
Sec61gamma-RC | 537 | CG14214-RC | 26..228 | 14..216 | 700 | 89.7 | Plus |
Sec61gamma-RB | 792 | CG14214-RB | 158..360 | 14..216 | 700 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12179585..12179793 | 225..17 | 1045 | 100 | Minus |
X | 23542271 | X | 19643884..19644086 | 14..216 | 700 | 89.7 | Plus |
2R | 25286936 | 2R | 20512745..20512877 | 215..83 | 200 | 76.7 | Minus |
Blast to na_te.dros performed 2015-02-11 10:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 3141..3178 | 189..225 | 106 | 78.9 | Plus |
BS11068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:45 Download gff for
BS11068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-PA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:44 Download gff for
BS11068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-PA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:39:49 Download gff for
BS11068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..318 | 17..225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:42 Download gff for
BS11068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..318 | 17..225 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:42 Download gff for
BS11068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12179585..12179791 | 19..225 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:39:49 Download gff for
BS11068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8067090..8067296 | 19..225 | 100 | <- | Minus |
BS11068.complete Sequence
239 bp assembled on 2006-11-01
GenBank Submission: FJ636757
> BS11068.complete
GAAGTTATCAGTCGACATGGACAAGGTTGTCAAATTCGCCGAACCCGGAC
GCGCCTTCGCCAAGGACTCAATCCGCCTGGTGAAGCGCTGCACAAAACCC
GACCGCAAGGAGTTCCAGAAAATCGCCATCGCCACCGCCGTGGGCTTCGC
CATCATGGGCTTCATCGGCTTCTTCGTCAAGCTGATTCACATTCCCATTA
ACAACATCATCGTGGGATCCTAGAAGCTTTCTAGACCAT
BS11068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-RA | 207 | CG8860-PA | 1..207 | 17..223 | 1035 | 100 | Plus |
Sec61gamma-RC | 207 | CG14214-PC | 1..200 | 17..216 | 685 | 89.5 | Plus |
Sec61gamma-RB | 207 | CG14214-PB | 1..200 | 17..216 | 685 | 89.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-RA | 420 | CG8860-RA | 110..318 | 17..225 | 1045 | 100 | Plus |
Sec61gamma-RC | 537 | CG14214-RC | 26..228 | 14..216 | 700 | 89.7 | Plus |
Sec61gamma-RB | 792 | CG14214-RB | 158..360 | 14..216 | 700 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12179585..12179793 | 225..17 | 1045 | 100 | Minus |
X | 23542271 | X | 19643884..19644086 | 14..216 | 700 | 89.7 | Plus |
2R | 25286936 | 2R | 20512745..20512877 | 215..83 | 200 | 76.7 | Minus |
Blast to na_te.dros performed 2014-11-28 00:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 3141..3178 | 189..225 | 106 | 78.9 | Plus |
BS11068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:28 Download gff for
BS11068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:42 Download gff for
BS11068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 46..254 | 17..225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:03 Download gff for
BS11068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..316 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:28 Download gff for
BS11068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 46..254 | 17..225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:44 Download gff for
BS11068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..316 | 17..223 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:44 Download gff for
BS11068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12179587..12179793 | 17..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:03 Download gff for
BS11068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8067092..8067298 | 17..223 | 100 | | Minus |
BS11068.pep Sequence
Translation from 16 to 222
> BS11068.pep
MDKVVKFAEPGRAFAKDSIRLVKRCTKPDRKEFQKIAIATAVGFAIMGFI
GFFVKLIHIPINNIIVGS*
BS11068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-PA | 68 | CG8860-PA | 1..68 | 1..68 | 343 | 100 | Plus |
Sec61gamma-PC | 68 | CG14214-PC | 1..68 | 1..68 | 339 | 98.5 | Plus |
Sec61gamma-PB | 68 | CG14214-PB | 1..68 | 1..68 | 339 | 98.5 | Plus |
Sec61gamma-PA | 68 | CG14214-PA | 1..68 | 1..68 | 339 | 98.5 | Plus |
CG13426-PA | 105 | CG13426-PA | 48..104 | 10..66 | 196 | 64.9 | Plus |