Clone BS11069 Report

Search the DGRC for BS11069

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG1678-RA
Protein status:BS11069.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11069.3prime Sequence

288 bp (287 high quality bases) assembled on 2006-04-19

> BS11069.3prime
ATGGTCTAGAAAGCTTCTAGGCGGACGCCTCACTGGAGGACTCGCTGGAG
CTCTCCTGGGAGGAAGAGTCTTCGGAGGAGGATGAGTTGCCACCTTGGGG
AGGTCCTTGTGGGAGTCCCTGGGGAGGTCCCTGAGGTATTCCCTGCGGCG
GCTGGAGTCCTCCAGAGCCCTGAAGTGGTCCCAGACCTCCCTGCGGAAGT
CCTGGAGGACGACGTCCTTGGACAGCAGCCAGAGCCACCATGGCGAGCAC
AACGATGAGGAAGATTACACGCATGTCGACTGATAACT

BS11069.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-PA 258 CG1678-RA 1..258 274..17 1290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-RB 434 CG1678-RB 56..315 274..15 1300 100 Minus
CG1678-RA 392 CG1678-RA 56..315 274..15 1300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21402458..21402717 15..274 1300 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:14:36 has no hits.

BS11069.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:46 Download gff for BS11069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-PA 1..258 17..274 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:46 Download gff for BS11069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-PA 1..258 17..274 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:24:30 Download gff for BS11069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 17..284 12..279 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:35:27 Download gff for BS11069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 51..318 12..279 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:35:27 Download gff for BS11069.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21402455..21402722 12..279 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:24:30 Download gff for BS11069.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21273482..21273749 12..279 98   Plus

BS11069.5prime Sequence

288 bp (287 high quality bases) assembled on 2006-04-19

> BS11069.5prime
GAAGTTATCAGTCGACATGCGTGTAATCTTCCTCATCGTTGTGCTCGCCA
TGGTGGCTCTGGCTGCTGTCCAAGGACGTCGTCCTCCAGGACTTCCGCAG
GGAGGTCTGGGACCACTTCAGGGCTCTGGAGGACTCCAGCCGCCGCAGGG
AATACCTCAGGGACCTCCCCAGGGACTCCCACAAGGACCTCCCCAAGGTG
GCAACTCATCCTCCTCCGAAGACTCTTCCTCCCAGGAGAGCTCCAGCGAG
TCCTCCAGTGAGGCGTCCGCCTAGAAGCTTTCTAGACC

BS11069.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-PA 258 CG1678-RA 1..258 17..274 1290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-RB 434 CG1678-RB 56..315 17..276 1300 100 Plus
CG1678-RA 392 CG1678-RA 56..315 17..276 1300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21402458..21402717 276..17 1300 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:02:35 has no hits.

BS11069.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:47 Download gff for BS11069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-PA 1..258 17..274 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:48 Download gff for BS11069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-PA 1..258 17..274 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:53:22 Download gff for BS11069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 17..284 12..279 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:35 Download gff for BS11069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 51..318 12..279 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:35 Download gff for BS11069.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21402455..21402722 12..279 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:53:22 Download gff for BS11069.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21273482..21273749 12..279 98   Minus

BS11069.complete Sequence

290 bp assembled on 2006-11-01

GenBank Submission: FJ636758

> BS11069.complete
GAAGTTATCAGTCGACATGCGTGTAATCTTCCTCATCGTTGTGCTCGCCA
TGGTGGCTCTGGCTGCTGTCCAAGGACGTCGTCCTCCAGGACTTCCGCAG
GGAGGTCTGGGACCACTTCAGGGCTCTGGAGGACTCCAGCCGCCGCAGGG
AATACCTCAGGGACCTCCCCAGGGACTCCCACAAGGACCTCCCCAAGGTG
GCAACTCATCCTCCTCCGAAGACTCTTCCTCCCAGGAGAGCTCCAGCGAG
TCCTCCAGTGAGGCGTCCGCCTAGAAGCTTTCTAGACCAT

BS11069.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-RB 258 CG1678-PB 1..258 17..274 1290 100 Plus
CG1678-RA 258 CG1678-PA 1..258 17..274 1290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-RB 434 CG1678-RB 56..315 17..276 1300 100 Plus
CG1678-RA 392 CG1678-RA 56..315 17..276 1300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21402458..21402717 276..17 1300 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:37:39 has no hits.

BS11069.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:21 Download gff for BS11069.complete
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 1..258 17..274 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:30 Download gff for BS11069.complete
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 17..284 12..279 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:33 Download gff for BS11069.complete
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 22..279 17..274 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:21 Download gff for BS11069.complete
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 17..284 12..279 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:48 Download gff for BS11069.complete
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 56..313 17..274 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:48 Download gff for BS11069.complete
Subject Subject Range Query Range Percent Splice Strand
X 21402460..21402717 17..274 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:33 Download gff for BS11069.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21273487..21273744 17..274 100   Minus

BS11069.pep Sequence

Translation from 16 to 273

> BS11069.pep
MRVIFLIVVLAMVALAAVQGRRPPGLPQGGLGPLQGSGGLQPPQGIPQGP
PQGLPQGPPQGGNSSSSEDSSSQESSSESSSEASA*

BS11069.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-PB 85 CG1678-PB 1..85 1..85 429 100 Plus
CG1678-PA 85 CG1678-PA 1..85 1..85 429 100 Plus
CG13947-PA 119 CG13947-PA 1..113 1..84 138 38.6 Plus