Clone Sequence Records
BS11069.3prime Sequence
288 bp (287 high quality bases) assembled on 2006-04-19
> BS11069.3prime
ATGGTCTAGAAAGCTTCTAGGCGGACGCCTCACTGGAGGACTCGCTGGAG
CTCTCCTGGGAGGAAGAGTCTTCGGAGGAGGATGAGTTGCCACCTTGGGG
AGGTCCTTGTGGGAGTCCCTGGGGAGGTCCCTGAGGTATTCCCTGCGGCG
GCTGGAGTCCTCCAGAGCCCTGAAGTGGTCCCAGACCTCCCTGCGGAAGT
CCTGGAGGACGACGTCCTTGGACAGCAGCCAGAGCCACCATGGCGAGCAC
AACGATGAGGAAGATTACACGCATGTCGACTGATAACT
BS11069.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-PA | 258 | CG1678-RA | 1..258 | 274..17 | 1290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-RB | 434 | CG1678-RB | 56..315 | 274..15 | 1300 | 100 | Minus |
CG1678-RA | 392 | CG1678-RA | 56..315 | 274..15 | 1300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21402458..21402717 | 15..274 | 1300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:14:36 has no hits.
BS11069.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:46 Download gff for
BS11069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-PA | 1..258 | 17..274 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:46 Download gff for
BS11069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-PA | 1..258 | 17..274 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:24:30 Download gff for
BS11069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 17..284 | 12..279 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:35:27 Download gff for
BS11069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 51..318 | 12..279 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:35:27 Download gff for
BS11069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21402455..21402722 | 12..279 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:24:30 Download gff for
BS11069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21273482..21273749 | 12..279 | 98 | | Plus |
BS11069.5prime Sequence
288 bp (287 high quality bases) assembled on 2006-04-19
> BS11069.5prime
GAAGTTATCAGTCGACATGCGTGTAATCTTCCTCATCGTTGTGCTCGCCA
TGGTGGCTCTGGCTGCTGTCCAAGGACGTCGTCCTCCAGGACTTCCGCAG
GGAGGTCTGGGACCACTTCAGGGCTCTGGAGGACTCCAGCCGCCGCAGGG
AATACCTCAGGGACCTCCCCAGGGACTCCCACAAGGACCTCCCCAAGGTG
GCAACTCATCCTCCTCCGAAGACTCTTCCTCCCAGGAGAGCTCCAGCGAG
TCCTCCAGTGAGGCGTCCGCCTAGAAGCTTTCTAGACC
BS11069.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-PA | 258 | CG1678-RA | 1..258 | 17..274 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-RB | 434 | CG1678-RB | 56..315 | 17..276 | 1300 | 100 | Plus |
CG1678-RA | 392 | CG1678-RA | 56..315 | 17..276 | 1300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21402458..21402717 | 276..17 | 1300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:02:35 has no hits.
BS11069.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:47 Download gff for
BS11069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-PA | 1..258 | 17..274 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:48 Download gff for
BS11069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-PA | 1..258 | 17..274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:53:22 Download gff for
BS11069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 17..284 | 12..279 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:35 Download gff for
BS11069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 51..318 | 12..279 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:35 Download gff for
BS11069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21402455..21402722 | 12..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:53:22 Download gff for
BS11069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21273482..21273749 | 12..279 | 98 | | Minus |
BS11069.complete Sequence
290 bp assembled on 2006-11-01
GenBank Submission: FJ636758
> BS11069.complete
GAAGTTATCAGTCGACATGCGTGTAATCTTCCTCATCGTTGTGCTCGCCA
TGGTGGCTCTGGCTGCTGTCCAAGGACGTCGTCCTCCAGGACTTCCGCAG
GGAGGTCTGGGACCACTTCAGGGCTCTGGAGGACTCCAGCCGCCGCAGGG
AATACCTCAGGGACCTCCCCAGGGACTCCCACAAGGACCTCCCCAAGGTG
GCAACTCATCCTCCTCCGAAGACTCTTCCTCCCAGGAGAGCTCCAGCGAG
TCCTCCAGTGAGGCGTCCGCCTAGAAGCTTTCTAGACCAT
BS11069.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-RB | 258 | CG1678-PB | 1..258 | 17..274 | 1290 | 100 | Plus |
CG1678-RA | 258 | CG1678-PA | 1..258 | 17..274 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-RB | 434 | CG1678-RB | 56..315 | 17..276 | 1300 | 100 | Plus |
CG1678-RA | 392 | CG1678-RA | 56..315 | 17..276 | 1300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21402458..21402717 | 276..17 | 1300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:37:39 has no hits.
BS11069.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:21 Download gff for
BS11069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 1..258 | 17..274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:30 Download gff for
BS11069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 17..284 | 12..279 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:33 Download gff for
BS11069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 22..279 | 17..274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:21 Download gff for
BS11069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 17..284 | 12..279 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:48 Download gff for
BS11069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 56..313 | 17..274 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:48 Download gff for
BS11069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21402460..21402717 | 17..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:33 Download gff for
BS11069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21273487..21273744 | 17..274 | 100 | | Minus |
BS11069.pep Sequence
Translation from 16 to 273
> BS11069.pep
MRVIFLIVVLAMVALAAVQGRRPPGLPQGGLGPLQGSGGLQPPQGIPQGP
PQGLPQGPPQGGNSSSSEDSSSQESSSESSSEASA*
BS11069.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-PB | 85 | CG1678-PB | 1..85 | 1..85 | 429 | 100 | Plus |
CG1678-PA | 85 | CG1678-PA | 1..85 | 1..85 | 429 | 100 | Plus |
CG13947-PA | 119 | CG13947-PA | 1..113 | 1..84 | 138 | 38.6 | Plus |