Clone Sequence Records
BS11071.3prime Sequence
242 bp (241 high quality bases) assembled on 2006-04-19
> BS11071.3prime
ATGGTCTAGAAACTTTTAGCATCCTTCGCACCAGCACTTCAGACTGGGGC
TGCAGTGGCCACTGGAGCGTCCCTCCTCCTTGCACACACGACGACAGGTC
TCGTTGTCCCAGACGGCACAGGGACCCTTGTATCTTCCGGACAGGCAGTC
GGCATCGGCCTCGTTGGCTCCCAGGACCACCAGCATCAGGACAGCGAAGA
GGGCGAACAAGTACTTGATCTGCATCATGTCGACTGATAACT
BS11071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10810-PA | 213 | Drs-RA | 1..213 | 228..16 | 1065 | 100 | Minus |
CG10812-PA | 210 | dro5-RA | 103..209 | 123..17 | 385 | 94.3 | Minus |
CG32268-PA | 219 | dro6-RA | 53..131 | 176..98 | 220 | 91.1 | Minus |
CG32279-PA | 213 | dro2-RA | 165..211 | 64..18 | 185 | 95.7 | Minus |
CG32274-PA | 210 | Drs-l-RA | 161..210 | 65..16 | 175 | 94 | Minus |
CG32279-PA | 213 | dro2-RA | 73..130 | 156..99 | 165 | 91.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drs-RA | 387 | CG10810-RA | 64..277 | 228..15 | 1070 | 100 | Minus |
Drsl5-RA | 364 | CG10812-RA | 104..263 | 176..17 | 560 | 90 | Minus |
Drsl2-RA | 333 | CG32279-RA | 17..237 | 238..18 | 475 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3369619..3369832 | 228..15 | 1070 | 100 | Minus |
3L | 28110227 | 3L | 3316884..3317043 | 176..17 | 560 | 90 | Minus |
3L | 28110227 | 3L | 3314365..3314585 | 238..18 | 475 | 81 | Minus |
3L | 28110227 | 3L | 3336146..3336362 | 18..228 | 405 | 80.2 | Plus |
3L | 28110227 | 3L | 3335577..3335759 | 14..196 | 270 | 76.5 | Plus |
3L | 28110227 | 3L | 3315784..3315850 | 84..18 | 185 | 85.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:17:37 has no hits.
BS11071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:50 Download gff for
BS11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-PA | 1..213 | 16..228 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:52 Download gff for
BS11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10810-PA | 1..213 | 16..228 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:25:27 Download gff for
BS11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..277 | 15..228 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:48:20 Download gff for
BS11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..277 | 15..228 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:48:20 Download gff for
BS11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3369619..3369832 | 15..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:25:27 Download gff for
BS11071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3369619..3369832 | 15..228 | 100 | | Minus |
BS11071.5prime Sequence
242 bp (241 high quality bases) assembled on 2006-04-19
> BS11071.5prime
GAAGTTATCAGTCGACATGATGCAGATCAAGTACTTGTTCGCCCTCTTCG
CTGTCCTGATGCTGGTGGTCCTGGGAGCCAACGAGGCCGATGCCGACTGC
CTGTCCGGAAGATACAAGGGTCCCTGTGCCGTCTGGGACAACGAGACCTG
TCGTCGTGTGTGCAAGGAGGAGGGACGCTCCAGTGGCCACTGCAGCCCCA
GTCTCGAGTGCTGGTGCGAAGGATGCTAAAAGTTTCTAGACC
BS11071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10810-PA | 213 | Drs-RA | 1..213 | 17..229 | 1015 | 99 | Plus |
CG10812-PA | 210 | dro5-RA | 103..209 | 122..228 | 335 | 92.5 | Plus |
CG32268-PA | 219 | dro6-RA | 53..131 | 69..147 | 220 | 91.1 | Plus |
CG32279-PA | 213 | dro2-RA | 73..130 | 89..146 | 165 | 91.3 | Plus |
CG32279-PA | 213 | dro2-RA | 165..211 | 181..227 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drs-RA | 387 | CG10810-RA | 64..277 | 17..230 | 1040 | 99.1 | Plus |
Drsl5-RA | 364 | CG10812-RA | 104..263 | 69..228 | 530 | 88.8 | Plus |
Drsl2-RA | 333 | CG32279-RA | 17..237 | 7..227 | 445 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3369619..3369832 | 17..230 | 1040 | 99.1 | Plus |
3L | 28110227 | 3L | 3316884..3317043 | 69..228 | 530 | 88.8 | Plus |
3L | 28110227 | 3L | 3314365..3314585 | 7..227 | 445 | 80.1 | Plus |
3L | 28110227 | 3L | 3336202..3336362 | 177..17 | 400 | 83.2 | Minus |
3L | 28110227 | 3L | 3335577..3335759 | 231..49 | 255 | 76 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:52:07 has no hits.
BS11071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:51 Download gff for
BS11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-PA | 1..213 | 17..229 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:54 Download gff for
BS11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10810-PA | 1..213 | 17..229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:39:02 Download gff for
BS11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..277 | 17..230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:11 Download gff for
BS11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..277 | 17..230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:11 Download gff for
BS11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3369619..3369832 | 17..230 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:39:02 Download gff for
BS11071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3369619..3369832 | 17..230 | 99 | | Plus |
BS11071.complete Sequence
244 bp assembled on 2009-05-14
GenBank Submission: KX803924
> BS11071.complete
GAAGTTATCAGTCGACATGATGCAGATCAAGTACTTGTTCGCCCTCTTCG
CTGTCCTGATGCTGGTGGTCCTGGGAGCCAACGAGGCCGATGCCGACTGC
CTGTCCGGAAGATACAAGGGTCCCTGTGCCGTCTGGGACAACGAGACCTG
TCGTCGTGTGTGCAAGGAGGAGGGACGCTCCAGTGGCCACTGCAGCCCCA
GTCTGAAGTGCTGGTGCGAAGGATGCTAAAAGTTTCTAGACCAT
BS11071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drs-RA | 213 | CG10810-PA | 1..213 | 17..229 | 1065 | 100 | Plus |
Drsl5-RA | 210 | CG10812-PA | 50..209 | 69..228 | 560 | 90 | Plus |
Drsl2-RA | 213 | CG32279-PA | 1..211 | 17..227 | 470 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drs-RA | 387 | CG10810-RA | 64..277 | 17..230 | 1070 | 100 | Plus |
Drsl5-RA | 364 | CG10812-RA | 104..263 | 69..228 | 560 | 90 | Plus |
Drsl2-RA | 333 | CG32279-RA | 17..237 | 7..227 | 475 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3369619..3369832 | 17..230 | 1070 | 100 | Plus |
3L | 28110227 | 3L | 3316884..3317043 | 69..228 | 560 | 90 | Plus |
3L | 28110227 | 3L | 3314365..3314585 | 7..227 | 475 | 81 | Plus |
3L | 28110227 | 3L | 3336146..3336362 | 227..17 | 405 | 80.2 | Minus |
3L | 28110227 | 3L | 3335577..3335759 | 231..49 | 270 | 76.5 | Minus |
3L | 28110227 | 3L | 3315784..3315850 | 161..227 | 185 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:27:58 has no hits.
BS11071.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-14 12:41:05 Download gff for
BS11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 51..261 | 17..227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:36 Download gff for
BS11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..274 | 17..227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:07 Download gff for
BS11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..274 | 17..227 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:07 Download gff for
BS11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3369619..3369829 | 17..227 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:36 Download gff for
BS11071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3369619..3369829 | 17..227 | 100 | | Plus |
BS11071.pep Sequence
Translation from 16 to 228
> BS11071.pep
MMQIKYLFALFAVLMLVVLGANEADADCLSGRYKGPCAVWDNETCRRVCK
EEGRSSGHCSPSLKCWCEGC*
BS11071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drs-PA | 70 | CG10810-PA | 1..70 | 1..70 | 394 | 100 | Plus |
Drsl5-PA | 69 | CG10812-PA | 1..69 | 2..70 | 338 | 82.6 | Plus |
Drsl2-PA | 70 | CG32279-PA | 1..70 | 1..70 | 328 | 78.6 | Plus |
Drsl6-PA | 72 | CG32268-PA | 1..72 | 1..70 | 324 | 77.8 | Plus |
Drsl1-PA | 69 | CG32274-PA | 1..69 | 2..70 | 278 | 66.7 | Plus |