Clone Sequence Records
BS11074.5prime Sequence
153 bp (152 high quality bases) assembled on 2006-04-19
> BS11074.5prime
GAAGTTATCAGTCGACATGCCTTGCCCATGCGGAAGCGGATGCAAATGCG
CCAGCCAGGCCACCAAGGGATCCTGCAACTGCGGATCTGACTGCAAGTGC
GGCGGCGACAAGAAATCCGCCTGCGGCTGCTCCGAGTGAAAGCTTTCTAG
ACC
BS11074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9470-PA | 123 | MtnA-RA | 1..123 | 17..139 | 615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnA-RB | 700 | CG9470-RB | 126..248 | 17..139 | 615 | 100 | Plus |
MtnA-RA | 329 | CG9470-RA | 126..248 | 17..139 | 615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9783859..9783960 | 139..38 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:37:27 has no hits.
BS11074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:57 Download gff for
BS11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-PA | 1..123 | 17..139 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:01 Download gff for
BS11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9470-PA | 1..123 | 17..139 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:45:30 Download gff for
BS11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 117..254 | 8..147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:38 Download gff for
BS11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 117..254 | 8..147 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:38 Download gff for
BS11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9783853..9783959 | 39..147 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:45:30 Download gff for
BS11074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5609575..5609681 | 39..147 | 98 | <- | Minus |
BS11074.3prime Sequence
153 bp (152 high quality bases) assembled on 2006-04-19
> BS11074.3prime
ATGGTCTAGAAAGCTTTCACTCGGAGCAGCCGCAGGCGGATTTCTTGTCG
CCGCCGCACTTGCAGTCAGATCCGCAGTTGCAGGATCCCTTGGTGGCCTG
GCTGGCGCATTTGCATCCGCTTCCGCATGGGCAAGGCATGTCGACTGATA
ACT
BS11074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9470-PA | 123 | MtnA-RA | 1..123 | 139..17 | 615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnA-RB | 700 | CG9470-RB | 126..248 | 139..17 | 615 | 100 | Minus |
MtnA-RA | 329 | CG9470-RA | 126..248 | 139..17 | 615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9783859..9783960 | 17..118 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 20:02:48 has no hits.
BS11074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:56 Download gff for
BS11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-PA | 1..123 | 17..139 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:59 Download gff for
BS11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9470-PA | 1..123 | 17..139 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:35:30 Download gff for
BS11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 117..254 | 9..148 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:48:15 Download gff for
BS11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 117..254 | 9..148 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:48:15 Download gff for
BS11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9783853..9783959 | 9..117 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:35:30 Download gff for
BS11074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5609575..5609681 | 9..117 | 98 | <- | Plus |
BS11074.complete Sequence
155 bp assembled on 2007-12-19
GenBank Submission: FJ636760
> BS11074.complete
GAAGTTATCAGTCGACATGCCTTGCCCATGCGGAAGCGGATGCAAATGCG
CCAGCCAGGCCACCAAGGGATCCTGCAACTGCGGATCTGACTGCAAGTGC
GGCGGCGACAAGAAATCCGCCTGCGGCTGCTCCGAGTGAAAGCTTTCTAG
ACCAT
BS11074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnA-RB | 123 | CG9470-PB | 1..123 | 17..139 | 615 | 100 | Plus |
MtnA-RA | 123 | CG9470-PA | 1..123 | 17..139 | 615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnA-RB | 700 | CG9470-RB | 126..248 | 17..139 | 615 | 100 | Plus |
MtnA-RA | 329 | CG9470-RA | 126..248 | 17..139 | 615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9783859..9783960 | 139..38 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:33:10 has no hits.
BS11074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:42 Download gff for
BS11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 1..123 | 17..139 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:58 Download gff for
BS11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 127..248 | 17..138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:27 Download gff for
BS11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 126..247 | 17..138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:13:42 Download gff for
BS11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 118..255 | 8..147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:39 Download gff for
BS11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 126..247 | 17..138 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:39 Download gff for
BS11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9783860..9783959 | 39..138 | 100 | <- | Minus |
3R | 9784224..9784245 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:27 Download gff for
BS11074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5609582..5609681 | 39..138 | 100 | <- | Minus |
arm_3R | 5609946..5609967 | 17..38 | 100 | | Minus |
BS11074.pep Sequence
Translation from 16 to 138
> BS11074.pep
MPCPCGSGCKCASQATKGSCNCGSDCKCGGDKKSACGCSE*
BS11074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnA-PB | 40 | CG9470-PB | 1..40 | 1..40 | 245 | 100 | Plus |
MtnA-PA | 40 | CG9470-PA | 1..40 | 1..40 | 245 | 100 | Plus |