Clone Sequence Records
BS11077.5prime Sequence
363 bp (362 high quality bases) assembled on 2006-04-19
> BS11077.5prime
GAAGTTATCAGTCGACATGCGTTCCGCGATTTTGTTCGGCCTTATTGTTT
GCCTGGCTTTTAGCCTTGTCTTGTCCCTGGAGGAGTCCATCAATCAATCC
AATGATCTGTCGTCGGTGGAAAAGGATATTGGCCAGGCTGTGGAGTCCGA
TGTGCGTGCTAAGCGGCAGTTTGGCTTTGGTGGTCCCTTTGGCGGATTTG
GAGGACCTTTCGGTGGATACGGCGGCTACGGAGGACTTGGAGGCTTTGGT
TATGGACGTCCCTTCTATGGAGGCTATGGCCGTCCCTTCTATGGAGGTTT
CGGAAGACCCTTCTACGGAGGCGGCTTCGGAGGTCCTTTCTTTGGTTAAA
AGCTTTCTAGACC
BS11077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-PA | 333 | CG17738-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-RA | 411 | CG17738-RA | 31..364 | 17..350 | 1670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12270920..12271253 | 17..350 | 1670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:17:07 has no hits.
BS11077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:03 Download gff for
BS11077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-PA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:10 Download gff for
BS11077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-PA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:37:59 Download gff for
BS11077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 24..371 | 10..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:13 Download gff for
BS11077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 24..371 | 10..359 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:13 Download gff for
BS11077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12270913..12271260 | 10..359 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:37:59 Download gff for
BS11077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8096635..8096982 | 10..359 | 98 | | Plus |
BS11077.3prime Sequence
363 bp (362 high quality bases) assembled on 2006-04-19
> BS11077.3prime
ATGGTCTAGAAAGCTTTTAACCAAAGAAAGGACCTCCGAAGCCGCCTCCG
TAGAAGGGTCTTCCGAAACCTCCATAGAAGGGACGGCCATAGCCTCCATA
GAAGGGACGTCCATAACCAAAGCCTCCAAGTCCTCCGTAGCCGCCGTATC
CACCGAAAGGTCCTCCAAATCCGCCAAAGGGACCACCAAAGCCAAACTGC
CGCTTAGCACGCACATCGGACTCCACAGCCTGGCCAATATCCTTTTCCAC
CGACGACAGATCATTGGATTGATTGATGGACTCCTCCAGGGACAAGACAA
GGCTAAAAGCCAGGCAAACAATAAGGCCGAACAAAATCGCGGAACGCATG
TCGACTGATAACT
BS11077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-PA | 333 | CG17738-RA | 1..333 | 349..17 | 1665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-RA | 411 | CG17738-RA | 31..364 | 349..16 | 1670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12270920..12271253 | 349..16 | 1670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:57:56 has no hits.
BS11077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:02 Download gff for
BS11077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-PA | 1..333 | 17..349 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:08 Download gff for
BS11077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-PA | 1..333 | 17..349 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:37:02 Download gff for
BS11077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 24..371 | 7..356 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:17 Download gff for
BS11077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 24..371 | 7..356 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:17 Download gff for
BS11077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12270913..12271260 | 7..356 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:37:02 Download gff for
BS11077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8096635..8096982 | 7..356 | 98 | | Minus |
BS11077.complete Sequence
365 bp assembled on 2007-10-17
GenBank Submission: FJ636761
> BS11077.complete
GAAGTTATCAGTCGACATGCGTTCCGCGATTTTGTTCGGCCTTATTGTTT
GCCTGGCTTTTAGCCTTGTCTTGTCCCTGGAGGAGTCCATCAATCAATCC
AATGATCTGTCGTCGGTGGAAAAGGATATTGGCCAGGCTGTGGAGTCCGA
TGTGCGTGCTAAGCGGCAGTTTGGCTTTGGTGGTCCCTTTGGCGGATTTG
GAGGACCTTTCGGTGGATACGGCGGCTACGGAGGACTTGGAGGCTTTGGT
TATGGACGTCCCTTCTATGGAGGCTATGGCCGTCCCTTCTATGGAGGTTT
CGGAAGACCCTTCTACGGAGGCGGCTTCGGAGGTCCTTTCTTTGGTTAAA
AGCTTTCTAGACCAT
BS11077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-RA | 333 | CG17738-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-RA | 411 | CG17738-RA | 31..364 | 17..350 | 1670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12270920..12271253 | 17..350 | 1670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:47:08 has no hits.
BS11077.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:32 Download gff for
BS11077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:35 Download gff for
BS11077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 24..371 | 10..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:13 Download gff for
BS11077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 31..361 | 17..347 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:09 Download gff for
BS11077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 1..331 | 17..347 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:20 Download gff for
BS11077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 31..361 | 17..347 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:20 Download gff for
BS11077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12270920..12271250 | 17..347 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:13 Download gff for
BS11077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8096642..8096972 | 17..347 | 100 | | Plus |
BS11077.pep Sequence
Translation from 16 to 348
> BS11077.pep
MRSAILFGLIVCLAFSLVLSLEESINQSNDLSSVEKDIGQAVESDVRAKR
QFGFGGPFGGFGGPFGGYGGYGGLGGFGYGRPFYGGYGRPFYGGFGRPFY
GGGFGGPFFG*
BS11077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-PA | 110 | CG17738-PA | 1..110 | 1..110 | 602 | 100 | Plus |
CG9757-PB | 127 | CG9757-PB | 5..127 | 11..110 | 178 | 40.5 | Plus |
CG9757-PA | 127 | CG9757-PA | 5..127 | 11..110 | 178 | 40.5 | Plus |
CG9269-PA | 146 | CG9269-PA | 1..117 | 1..108 | 164 | 35.5 | Plus |
CG7294-PA | 127 | CG7294-PA | 14..73 | 46..110 | 159 | 60.6 | Plus |