Clone BS11077 Report

Search the DGRC for BS11077

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG17738-RA
Protein status:BS11077.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11077.5prime Sequence

363 bp (362 high quality bases) assembled on 2006-04-19

> BS11077.5prime
GAAGTTATCAGTCGACATGCGTTCCGCGATTTTGTTCGGCCTTATTGTTT
GCCTGGCTTTTAGCCTTGTCTTGTCCCTGGAGGAGTCCATCAATCAATCC
AATGATCTGTCGTCGGTGGAAAAGGATATTGGCCAGGCTGTGGAGTCCGA
TGTGCGTGCTAAGCGGCAGTTTGGCTTTGGTGGTCCCTTTGGCGGATTTG
GAGGACCTTTCGGTGGATACGGCGGCTACGGAGGACTTGGAGGCTTTGGT
TATGGACGTCCCTTCTATGGAGGCTATGGCCGTCCCTTCTATGGAGGTTT
CGGAAGACCCTTCTACGGAGGCGGCTTCGGAGGTCCTTTCTTTGGTTAAA
AGCTTTCTAGACC

BS11077.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-PA 333 CG17738-RA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-RA 411 CG17738-RA 31..364 17..350 1670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12270920..12271253 17..350 1670 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:17:07 has no hits.

BS11077.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:03 Download gff for BS11077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-PA 1..333 17..349 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:10 Download gff for BS11077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-PA 1..333 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:37:59 Download gff for BS11077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 24..371 10..359 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:13 Download gff for BS11077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 24..371 10..359 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:13 Download gff for BS11077.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12270913..12271260 10..359 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:37:59 Download gff for BS11077.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8096635..8096982 10..359 98   Plus

BS11077.3prime Sequence

363 bp (362 high quality bases) assembled on 2006-04-19

> BS11077.3prime
ATGGTCTAGAAAGCTTTTAACCAAAGAAAGGACCTCCGAAGCCGCCTCCG
TAGAAGGGTCTTCCGAAACCTCCATAGAAGGGACGGCCATAGCCTCCATA
GAAGGGACGTCCATAACCAAAGCCTCCAAGTCCTCCGTAGCCGCCGTATC
CACCGAAAGGTCCTCCAAATCCGCCAAAGGGACCACCAAAGCCAAACTGC
CGCTTAGCACGCACATCGGACTCCACAGCCTGGCCAATATCCTTTTCCAC
CGACGACAGATCATTGGATTGATTGATGGACTCCTCCAGGGACAAGACAA
GGCTAAAAGCCAGGCAAACAATAAGGCCGAACAAAATCGCGGAACGCATG
TCGACTGATAACT

BS11077.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-PA 333 CG17738-RA 1..333 349..17 1665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-RA 411 CG17738-RA 31..364 349..16 1670 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12270920..12271253 349..16 1670 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:57:56 has no hits.

BS11077.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:02 Download gff for BS11077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-PA 1..333 17..349 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:08 Download gff for BS11077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-PA 1..333 17..349 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:37:02 Download gff for BS11077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 24..371 7..356 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:17 Download gff for BS11077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 24..371 7..356 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:17 Download gff for BS11077.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12270913..12271260 7..356 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:37:02 Download gff for BS11077.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8096635..8096982 7..356 98   Minus

BS11077.complete Sequence

365 bp assembled on 2007-10-17

GenBank Submission: FJ636761

> BS11077.complete
GAAGTTATCAGTCGACATGCGTTCCGCGATTTTGTTCGGCCTTATTGTTT
GCCTGGCTTTTAGCCTTGTCTTGTCCCTGGAGGAGTCCATCAATCAATCC
AATGATCTGTCGTCGGTGGAAAAGGATATTGGCCAGGCTGTGGAGTCCGA
TGTGCGTGCTAAGCGGCAGTTTGGCTTTGGTGGTCCCTTTGGCGGATTTG
GAGGACCTTTCGGTGGATACGGCGGCTACGGAGGACTTGGAGGCTTTGGT
TATGGACGTCCCTTCTATGGAGGCTATGGCCGTCCCTTCTATGGAGGTTT
CGGAAGACCCTTCTACGGAGGCGGCTTCGGAGGTCCTTTCTTTGGTTAAA
AGCTTTCTAGACCAT

BS11077.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-RA 333 CG17738-PA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-RA 411 CG17738-RA 31..364 17..350 1670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12270920..12271253 17..350 1670 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:47:08 has no hits.

BS11077.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:32 Download gff for BS11077.complete
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 1..333 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:35 Download gff for BS11077.complete
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 24..371 10..359 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:13 Download gff for BS11077.complete
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 31..361 17..347 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:09 Download gff for BS11077.complete
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 1..331 17..347 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:20 Download gff for BS11077.complete
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 31..361 17..347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:20 Download gff for BS11077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12270920..12271250 17..347 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:13 Download gff for BS11077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8096642..8096972 17..347 100   Plus

BS11077.pep Sequence

Translation from 16 to 348

> BS11077.pep
MRSAILFGLIVCLAFSLVLSLEESINQSNDLSSVEKDIGQAVESDVRAKR
QFGFGGPFGGFGGPFGGYGGYGGLGGFGYGRPFYGGYGRPFYGGFGRPFY
GGGFGGPFFG*

BS11077.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-PA 110 CG17738-PA 1..110 1..110 602 100 Plus
CG9757-PB 127 CG9757-PB 5..127 11..110 178 40.5 Plus
CG9757-PA 127 CG9757-PA 5..127 11..110 178 40.5 Plus
CG9269-PA 146 CG9269-PA 1..117 1..108 164 35.5 Plus
CG7294-PA 127 CG7294-PA 14..73 46..110 159 60.6 Plus