Clone BS11082 Report

Search the DGRC for BS11082

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG11279-RA
Protein status:BS11082.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11082.5prime Sequence

339 bp (338 high quality bases) assembled on 2006-04-19

> BS11082.5prime
GAAGTTATCAGTCGACATGCCACAGGGAAAATTCAAGAAGGCCAAGCTAC
CAGCAGCGATACAGAAAAAGAAGAACCAAAAGCAAGCTGCTTTCACCCGT
CGATCAAATGCGCCCATTCAGGCGAAAAAGGCCAAGTTCAATGAGACGCA
GAAGATCAAGTCCGTCATTTCGAAGTCGGTCAACAAGAGCGTGGAGAGCG
AACTGCGCTCCCGCGCCCACGAGGGCTACATCCAGTTGAGCAAGGCCCAG
GAGGCGGTGGCCAAGCACCACGCCTCCCAGGCGAAGGCGGCTGCGGCGGC
CAGTACCGCCAAGTCCGCGGAATAGAAGCTTTCTAGACC

BS11082.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11279-PA 309 CG11279-RA 1..309 17..325 1495 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11279-RC 1880 CG11279-RC 105..413 17..325 1515 99.4 Plus
CG11279-RB 927 CG11279-RB 105..413 17..325 1515 99.4 Plus
CG11279-RA 452 CG11279-RA 71..379 17..325 1515 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13047235..13047452 108..325 1060 99.1 Plus
3L 28110227 3L 13047081..13047171 17..107 455 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:13:59 has no hits.

BS11082.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:14 Download gff for BS11082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11279-PA 1..309 17..325 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:24 Download gff for BS11082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11279-PA 1..309 17..325 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:18:21 Download gff for BS11082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11279-RA 65..385 11..334 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:18 Download gff for BS11082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11279-RA 65..385 11..334 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:18 Download gff for BS11082.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13047075..13047171 11..107 96 -> Plus
3L 13047235..13047458 108..334 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:18:21 Download gff for BS11082.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13040175..13040271 11..107 96 -> Plus
arm_3L 13040335..13040558 108..334 97   Plus

BS11082.3prime Sequence

339 bp (338 high quality bases) assembled on 2006-04-19

> BS11082.3prime
ATGGTCTAGAAAGCTTCTATTCCGCGGACTTGGCGGTACTGGCCGCCGCA
GCCGCCTTCGCCTGGGAGGCGTGGTGCTTGGCCACCGCCTCCTGGGCCTT
GCTCAACTGGATGTAGCCCTCGTGGGCGCGGGAGCGCAGTTCGCTCTCCA
CGCTCTTGTTGACCGACTTCGAAATGACGGACTTGATCTTCTGCGTCTCA
TTGAACTTGGCCTTTTTCGCCTGAATGGGCGCATTTGATCGACGGGTGAA
AGCAGCTTGCTTTTGGTTCTTCTTTTTCTGTATCGCTGCTGGTAGCTTGG
CCTTCTTGAATTTTCCCTGTGGCATGTCGACTGATAACT

BS11082.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11279-PA 309 CG11279-RA 1..309 325..17 1495 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11279-RC 1880 CG11279-RC 105..413 325..17 1515 99.4 Minus
CG11279-RB 927 CG11279-RB 105..413 325..17 1515 99.4 Minus
CG11279-RA 452 CG11279-RA 71..379 325..17 1515 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13047235..13047452 234..17 1060 99.1 Minus
3L 28110227 3L 13047081..13047171 325..235 455 100 Minus
Blast to na_te.dros performed on 2015-02-06 18:30:57 has no hits.

BS11082.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:13 Download gff for BS11082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11279-PA 1..309 17..325 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:23 Download gff for BS11082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11279-PA 1..309 17..325 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:40:16 Download gff for BS11082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11279-RA 65..385 8..331 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:44:45 Download gff for BS11082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11279-RA 65..385 8..331 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:44:45 Download gff for BS11082.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13047075..13047171 235..331 96 -> Minus
3L 13047235..13047458 8..234 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:40:16 Download gff for BS11082.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13040175..13040271 235..331 96 -> Minus
arm_3L 13040335..13040558 8..234 97   Minus

BS11082.complete Sequence

341 bp assembled on 2006-11-01

GenBank Submission: FJ636762

> BS11082.complete
GAAGTTATCAGTCGACATGCCACAGGGAAAATTCAAGAAGGCCAAGCTAC
CAGCAGCGATACAGAAAAAGAAGAACCAAAAGCAAGCTGCTTTCACCCGT
CGATCAAATGCGCCCATTCAGGCGAAAAAGGCCAAGTTCAATGAGACGCA
GAAGATCAAGTCCGTCATTTCGAAGTCGGTCAACAAGAGCGTGGAGAGCG
AACTGCGCTCCCGCGCCCACGAGGGCTACATCCAGTTGAGCAAGGCCCAG
GAGGCGGTGGCCAAGCACCACGCCTCCCAGGCGAAGGCGGCTGCGGCGGC
CAGTACCGCCAAGTCCGCGGAATAGAAGCTTTCTAGACCAT

BS11082.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11279-RC 309 CG11279-PC 1..309 17..325 1515 99.4 Plus
CG11279-RB 309 CG11279-PB 1..309 17..325 1515 99.4 Plus
CG11279-RA 309 CG11279-PA 1..309 17..325 1515 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11279-RC 1880 CG11279-RC 105..413 17..325 1515 99.4 Plus
CG11279-RB 927 CG11279-RB 105..413 17..325 1515 99.4 Plus
CG11279-RA 452 CG11279-RA 71..379 17..325 1515 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13047235..13047452 108..325 1060 99.1 Plus
3L 28110227 3L 13047081..13047171 17..107 455 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:45:40 has no hits.

BS11082.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:22 Download gff for BS11082.complete
Subject Subject Range Query Range Percent Splice Strand
CG11279-RA 1..309 17..325 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:45 Download gff for BS11082.complete
Subject Subject Range Query Range Percent Splice Strand
CG11279-RA 52..372 11..334 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:03 Download gff for BS11082.complete
Subject Subject Range Query Range Percent Splice Strand
CG11279-RA 71..379 17..325 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:23 Download gff for BS11082.complete
Subject Subject Range Query Range Percent Splice Strand
CG11279-RA 52..372 11..334 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:27 Download gff for BS11082.complete
Subject Subject Range Query Range Percent Splice Strand
CG11279-RA 71..379 17..325 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:27 Download gff for BS11082.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13047081..13047171 17..107 100 -> Plus
3L 13047235..13047452 108..325 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:03 Download gff for BS11082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13040181..13040271 17..107 100 -> Plus
arm_3L 13040335..13040552 108..325 99   Plus

BS11082.pep Sequence

Translation from 16 to 324

> BS11082.pep
MPQGKFKKAKLPAAIQKKKNQKQAAFTRRSNAPIQAKKAKFNETQKIKSV
ISKSVNKSVESELRSRAHEGYIQLSKAQEAVAKHHASQAKAAAAASTAKS
AE*

BS11082.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11279-PC 102 CG11279-PC 1..102 1..102 492 100 Plus
CG11279-PB 102 CG11279-PB 1..102 1..102 492 100 Plus
CG11279-PA 102 CG11279-PA 1..102 1..102 492 100 Plus