Clone Sequence Records
BS11082.5prime Sequence
339 bp (338 high quality bases) assembled on 2006-04-19
> BS11082.5prime
GAAGTTATCAGTCGACATGCCACAGGGAAAATTCAAGAAGGCCAAGCTAC
CAGCAGCGATACAGAAAAAGAAGAACCAAAAGCAAGCTGCTTTCACCCGT
CGATCAAATGCGCCCATTCAGGCGAAAAAGGCCAAGTTCAATGAGACGCA
GAAGATCAAGTCCGTCATTTCGAAGTCGGTCAACAAGAGCGTGGAGAGCG
AACTGCGCTCCCGCGCCCACGAGGGCTACATCCAGTTGAGCAAGGCCCAG
GAGGCGGTGGCCAAGCACCACGCCTCCCAGGCGAAGGCGGCTGCGGCGGC
CAGTACCGCCAAGTCCGCGGAATAGAAGCTTTCTAGACC
BS11082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-PA | 309 | CG11279-RA | 1..309 | 17..325 | 1495 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-RC | 1880 | CG11279-RC | 105..413 | 17..325 | 1515 | 99.4 | Plus |
CG11279-RB | 927 | CG11279-RB | 105..413 | 17..325 | 1515 | 99.4 | Plus |
CG11279-RA | 452 | CG11279-RA | 71..379 | 17..325 | 1515 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13047235..13047452 | 108..325 | 1060 | 99.1 | Plus |
3L | 28110227 | 3L | 13047081..13047171 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:13:59 has no hits.
BS11082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:14 Download gff for
BS11082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-PA | 1..309 | 17..325 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:24 Download gff for
BS11082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-PA | 1..309 | 17..325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:18:21 Download gff for
BS11082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 65..385 | 11..334 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:18 Download gff for
BS11082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 65..385 | 11..334 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:18 Download gff for
BS11082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13047075..13047171 | 11..107 | 96 | -> | Plus |
3L | 13047235..13047458 | 108..334 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:18:21 Download gff for
BS11082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13040175..13040271 | 11..107 | 96 | -> | Plus |
arm_3L | 13040335..13040558 | 108..334 | 97 | | Plus |
BS11082.3prime Sequence
339 bp (338 high quality bases) assembled on 2006-04-19
> BS11082.3prime
ATGGTCTAGAAAGCTTCTATTCCGCGGACTTGGCGGTACTGGCCGCCGCA
GCCGCCTTCGCCTGGGAGGCGTGGTGCTTGGCCACCGCCTCCTGGGCCTT
GCTCAACTGGATGTAGCCCTCGTGGGCGCGGGAGCGCAGTTCGCTCTCCA
CGCTCTTGTTGACCGACTTCGAAATGACGGACTTGATCTTCTGCGTCTCA
TTGAACTTGGCCTTTTTCGCCTGAATGGGCGCATTTGATCGACGGGTGAA
AGCAGCTTGCTTTTGGTTCTTCTTTTTCTGTATCGCTGCTGGTAGCTTGG
CCTTCTTGAATTTTCCCTGTGGCATGTCGACTGATAACT
BS11082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-PA | 309 | CG11279-RA | 1..309 | 325..17 | 1495 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-RC | 1880 | CG11279-RC | 105..413 | 325..17 | 1515 | 99.4 | Minus |
CG11279-RB | 927 | CG11279-RB | 105..413 | 325..17 | 1515 | 99.4 | Minus |
CG11279-RA | 452 | CG11279-RA | 71..379 | 325..17 | 1515 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13047235..13047452 | 234..17 | 1060 | 99.1 | Minus |
3L | 28110227 | 3L | 13047081..13047171 | 325..235 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 18:30:57 has no hits.
BS11082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:13 Download gff for
BS11082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-PA | 1..309 | 17..325 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:23 Download gff for
BS11082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-PA | 1..309 | 17..325 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:40:16 Download gff for
BS11082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 65..385 | 8..331 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:44:45 Download gff for
BS11082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 65..385 | 8..331 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:44:45 Download gff for
BS11082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13047075..13047171 | 235..331 | 96 | -> | Minus |
3L | 13047235..13047458 | 8..234 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:40:16 Download gff for
BS11082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13040175..13040271 | 235..331 | 96 | -> | Minus |
arm_3L | 13040335..13040558 | 8..234 | 97 | | Minus |
BS11082.complete Sequence
341 bp assembled on 2006-11-01
GenBank Submission: FJ636762
> BS11082.complete
GAAGTTATCAGTCGACATGCCACAGGGAAAATTCAAGAAGGCCAAGCTAC
CAGCAGCGATACAGAAAAAGAAGAACCAAAAGCAAGCTGCTTTCACCCGT
CGATCAAATGCGCCCATTCAGGCGAAAAAGGCCAAGTTCAATGAGACGCA
GAAGATCAAGTCCGTCATTTCGAAGTCGGTCAACAAGAGCGTGGAGAGCG
AACTGCGCTCCCGCGCCCACGAGGGCTACATCCAGTTGAGCAAGGCCCAG
GAGGCGGTGGCCAAGCACCACGCCTCCCAGGCGAAGGCGGCTGCGGCGGC
CAGTACCGCCAAGTCCGCGGAATAGAAGCTTTCTAGACCAT
BS11082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-RC | 309 | CG11279-PC | 1..309 | 17..325 | 1515 | 99.4 | Plus |
CG11279-RB | 309 | CG11279-PB | 1..309 | 17..325 | 1515 | 99.4 | Plus |
CG11279-RA | 309 | CG11279-PA | 1..309 | 17..325 | 1515 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-RC | 1880 | CG11279-RC | 105..413 | 17..325 | 1515 | 99.4 | Plus |
CG11279-RB | 927 | CG11279-RB | 105..413 | 17..325 | 1515 | 99.4 | Plus |
CG11279-RA | 452 | CG11279-RA | 71..379 | 17..325 | 1515 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13047235..13047452 | 108..325 | 1060 | 99.1 | Plus |
3L | 28110227 | 3L | 13047081..13047171 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:45:40 has no hits.
BS11082.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:22 Download gff for
BS11082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 1..309 | 17..325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:45 Download gff for
BS11082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 52..372 | 11..334 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:03 Download gff for
BS11082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 71..379 | 17..325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:23 Download gff for
BS11082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 52..372 | 11..334 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:27 Download gff for
BS11082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 71..379 | 17..325 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:27 Download gff for
BS11082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13047081..13047171 | 17..107 | 100 | -> | Plus |
3L | 13047235..13047452 | 108..325 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:03 Download gff for
BS11082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13040181..13040271 | 17..107 | 100 | -> | Plus |
arm_3L | 13040335..13040552 | 108..325 | 99 | | Plus |
BS11082.pep Sequence
Translation from 16 to 324
> BS11082.pep
MPQGKFKKAKLPAAIQKKKNQKQAAFTRRSNAPIQAKKAKFNETQKIKSV
ISKSVNKSVESELRSRAHEGYIQLSKAQEAVAKHHASQAKAAAAASTAKS
AE*
BS11082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-PC | 102 | CG11279-PC | 1..102 | 1..102 | 492 | 100 | Plus |
CG11279-PB | 102 | CG11279-PB | 1..102 | 1..102 | 492 | 100 | Plus |
CG11279-PA | 102 | CG11279-PA | 1..102 | 1..102 | 492 | 100 | Plus |