Clone Sequence Records
BS11083.3prime Sequence
234 bp (233 high quality bases) assembled on 2006-04-19
> BS11083.3prime
ATGGTCTAGAAAGCTTTTAGAAGCCACATGGATAAGTTGGGGGCGTGTTG
TAGTAGTTCCAGACACGGGGATCGGGAATGCCGCCCTCGGGCAGAGGGGG
ACAGCACATGCCCGGAGCAGGAGAGCACGGGATGGGAGACGGGGCTCCGC
ATGGCGGACTGTGGGGGCCACAGCAGGGTGTTTCATTACAGGGTCCACAG
CATCCACATCCGTTGCACATGTCGACTGATAACT
BS11083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17376-PB | 204 | CG17376-RB | 1..204 | 220..17 | 1020 | 100 | Minus |
| CG17377-PC | 864 | CG17377-RC | 388..512 | 175..51 | 275 | 88.8 | Minus |
| CG17376-PA | 138 | CG17376-RA | 1..31 | 220..190 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17376-RB | 518 | CG17376-RB | 158..363 | 222..17 | 1030 | 100 | Minus |
| CG17376-RC | 784 | CG17376-RC | 98..294 | 222..26 | 985 | 100 | Minus |
| CG17377-RD | 907 | CG17377-RD | 487..645 | 175..17 | 435 | 84.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6800487..6800683 | 26..222 | 985 | 100 | Plus |
| 2L | 23513712 | 2L | 6802059..6802187 | 47..175 | 420 | 88.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:11:07 has no hits.
BS11083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:15 Download gff for
BS11083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-PB | 1..204 | 17..220 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:25 Download gff for
BS11083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-PB | 1..204 | 17..220 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:38:08 Download gff for
BS11083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 95..305 | 13..225 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:35 Download gff for
BS11083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 155..365 | 13..225 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:35 Download gff for
BS11083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6800487..6800686 | 26..225 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:38:08 Download gff for
BS11083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6800487..6800686 | 26..225 | 99 | | Plus |
BS11083.5prime Sequence
234 bp (233 high quality bases) assembled on 2006-04-19
> BS11083.5prime
GAAGTTATCAGTCGACATGTGCAACGGATGTGGATGCTGTGGACCCTGTA
ATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGCGGAGCCCCGTCT
CCCATCCCGTGCTCTCCTGCTCCGGGCATGTGCTGTCCCCCTCTGCCCGA
GGGCGGCATTCCCGATCCCCGTGTCTGGAACTACTACAACACGCCCCCAA
CTTATCCATGTGGCTTCTAAAAGCTTTCTAGACC
BS11083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17376-PB | 204 | CG17376-RB | 1..204 | 17..220 | 1020 | 100 | Plus |
| CG17377-PC | 864 | CG17377-RC | 388..512 | 62..186 | 275 | 88.8 | Plus |
| CG17376-PA | 138 | CG17376-RA | 1..31 | 17..47 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 06:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17376-RB | 518 | CG17376-RB | 158..363 | 15..220 | 1030 | 100 | Plus |
| CG17376-RC | 784 | CG17376-RC | 98..294 | 15..211 | 985 | 100 | Plus |
| CG17377-RD | 907 | CG17377-RD | 487..645 | 62..220 | 435 | 84.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 06:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6800487..6800683 | 211..15 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 6802059..6802187 | 190..62 | 420 | 88.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 06:53:04 has no hits.
BS11083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:17 Download gff for
BS11083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-PB | 1..204 | 17..220 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:27 Download gff for
BS11083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-PB | 1..204 | 17..220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:05:16 Download gff for
BS11083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 95..305 | 12..224 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:41:39 Download gff for
BS11083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 155..365 | 12..224 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:41:39 Download gff for
BS11083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6800487..6800686 | 12..211 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:05:16 Download gff for
BS11083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6800487..6800686 | 12..211 | 99 | | Minus |
BS11083.complete Sequence
236 bp assembled on 2007-10-17
GenBank Submission: FJ636763
> BS11083.complete
GAAGTTATCAGTCGACATGTGCAACGGATGTGGATGCTGTGGACCCTGTA
ATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGCGGAGCCCCGTCT
CCCATCCCGTGCTCTCCTGCTCCGGGCATGTGCTGTCCCCCTCTGCCCGA
GGGCGGCATTCCCGATCCCCGTGTCTGGAACTACTACAACACGCCCCCAA
CTTATCCATGTGGCTTCTAAAAGCTTTCTAGACCAT
BS11083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17376-RB | 204 | CG17376-PB | 1..204 | 17..220 | 1020 | 100 | Plus |
| CG17376-RC | 276 | CG17376-PC | 1..195 | 17..211 | 975 | 100 | Plus |
| CG17377-RD | 546 | CG17377-PD | 388..546 | 62..220 | 435 | 84.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17376-RB | 518 | CG17376-RB | 158..363 | 15..220 | 1030 | 100 | Plus |
| CG17376-RC | 784 | CG17376-RC | 98..294 | 15..211 | 985 | 100 | Plus |
| CG17377-RD | 907 | CG17377-RD | 487..645 | 62..220 | 435 | 84.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6800487..6800683 | 211..15 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 6802059..6802187 | 190..62 | 420 | 88.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:05:31 has no hits.
BS11083.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:44 Download gff for
BS11083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 1..204 | 17..220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:27:08 Download gff for
BS11083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 95..305 | 12..224 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:23 Download gff for
BS11083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 100..301 | 17..218 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:37 Download gff for
BS11083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 100..301 | 17..218 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:56 Download gff for
BS11083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 160..361 | 17..218 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:56 Download gff for
BS11083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6800487..6800681 | 17..211 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:23 Download gff for
BS11083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6800487..6800681 | 17..211 | 100 | | Minus |
BS11083.pep Sequence
Translation from 16 to 219
> BS11083.pep
MCNGCGCCGPCNETPCCGPHSPPCGAPSPIPCSPAPGMCCPPLPEGGIPD
PRVWNYYNTPPTYPCGF*
BS11083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17376-PB | 67 | CG17376-PB | 1..67 | 1..67 | 440 | 100 | Plus |
| CG17376-PC | 91 | CG17376-PC | 1..65 | 1..65 | 428 | 100 | Plus |
| CG17377-PD | 181 | CG17377-PD | 109..180 | 2..66 | 336 | 76.4 | Plus |
| CG17377-PE | 207 | CG17377-PE | 109..179 | 2..65 | 330 | 76.1 | Plus |
