Clone Sequence Records
BS11084.3prime Sequence
318 bp (317 high quality bases) assembled on 2006-04-19
> BS11084.3prime
ATGGTCTAGAAAGCTTTTAGTTGGCAGTTACTCTGCTATTCATGTAAAAT
TGCTGGGCGGAGAGCAACAAAGTCAAAACATATATACATGCGGCAATCCA
GCAGTTGTAGGCATTCTGATTGTATGCTCTATTTGCAGCTGCATAAAAAT
CTTCCAACGAATGGTATTCCTCCTCAAGAGGTAAGTCCTCAATGAGGGCT
ACACTATTTATGTAGAAGAATAGACCCATTAAAACCAATTGGACAATACC
CCAAACAGAGATAATAAGACCACAAAGTGATAGTTTCGGGCCACAGATTT
TCATGTCGACTGATAACT
BS11084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-PA | 288 | CG40127-RA | 1..288 | 304..17 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-RA | 505 | CG40127-RA | 114..401 | 304..17 | 1440 | 100 | Minus |
CG40127-RB | 1160 | CG40127-RB | 114..401 | 304..17 | 1440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4187760..4187880 | 116..236 | 605 | 100 | Plus |
2R | 25286936 | 2R | 4187594..4187696 | 17..119 | 515 | 100 | Plus |
2R | 25286936 | 2R | 4187944..4188014 | 234..304 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:25:09 has no hits.
BS11084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:28 Download gff for
BS11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-PA | 1..288 | 17..304 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:14 Download gff for
BS11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 109..410 | 5..311 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:39 Download gff for
BS11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 109..410 | 5..311 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:39 Download gff for
BS11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4187585..4187692 | 5..115 | 96 | <- | Plus |
2R | 4187760..4187879 | 116..235 | 100 | <- | Plus |
2R | 4187946..4188019 | 236..311 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:14 Download gff for
BS11084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 75090..75197 | 5..115 | 96 | <- | Plus |
arm_2R | 75265..75384 | 116..235 | 100 | <- | Plus |
arm_2R | 75451..75524 | 236..311 | 94 | | Plus |
BS11084.5prime Sequence
318 bp (317 high quality bases) assembled on 2006-04-19
> BS11084.5prime
GAAGTTATCAGTCGACATGAAAATCTGTGGCCCGAAACTATCACTTTGTG
GTCTTATTATCTCTGTTTGGGGTATTGTCCAATTGGTTTTAATGGGTCTA
TTCTTCTACATAAATAGTGTAGCCCTCATTGAGGACTTACCTCTTGAGGA
GGAATACCATTCGTTGGAAGATTTTTATGCAGCTGCAAATAGAGCATACA
ATCAGAATGCCTACAACTGCTGGATTGCCGCATGTATATATGTTTTGACT
TTGTTGCTCTCCGCCCAGCAATTTTACATGAATAGCAGAGTAACTGCCAA
CTAAAAGCTTTCTAGACC
BS11084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-PA | 288 | CG40127-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-RA | 505 | CG40127-RA | 114..401 | 17..304 | 1440 | 100 | Plus |
CG40127-RB | 1160 | CG40127-RB | 114..401 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4187760..4187880 | 205..85 | 605 | 100 | Minus |
2R | 25286936 | 2R | 4187594..4187696 | 304..202 | 515 | 100 | Minus |
2R | 25286936 | 2R | 4187944..4188014 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:16:57 has no hits.
BS11084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:28 Download gff for
BS11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-PA | 1..288 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:37:57 Download gff for
BS11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 109..410 | 10..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:12 Download gff for
BS11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 109..410 | 10..316 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:12 Download gff for
BS11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4187585..4187692 | 206..316 | 96 | <- | Minus |
2R | 4187760..4187879 | 86..205 | 100 | <- | Minus |
2R | 4187946..4188019 | 10..85 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:37:57 Download gff for
BS11084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 75090..75197 | 206..316 | 96 | <- | Minus |
arm_2R | 75265..75384 | 86..205 | 100 | <- | Minus |
arm_2R | 75451..75524 | 10..85 | 94 | | Minus |
BS11084.complete Sequence
320 bp assembled on 2006-11-01
GenBank Submission: FJ636764
> BS11084.complete
GAAGTTATCAGTCGACATGAAAATCTGTGGCCCGAAACTATCACTTTGTG
GTCTTATTATCTCTGTTTGGGGTATTGTCCAATTGGTTTTAATGGGTCTA
TTCTTCTACATAAATAGTGTAGCCCTCATTGAGGACTTACCTCTTGAGGA
GGAATACCATTCGTTGGAAGATTTTTATGCAGCTGCAAATAGAGCATACA
ATCAGAATGCCTACAACTGCTGGATTGCCGCATGTATATATGTTTTGACT
TTGTTGCTCTCCGCCCAGCAATTTTACATGAATAGCAGAGTAACTGCCAA
CTAAAAGCTTTCTAGACCAT
BS11084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-RA | 288 | CG40127-PA | 1..288 | 17..304 | 1440 | 100 | Plus |
CG40127-RB | 288 | CG40127-PB | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-RA | 505 | CG40127-RA | 114..401 | 17..304 | 1440 | 100 | Plus |
CG40127-RB | 1160 | CG40127-RB | 114..401 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4187760..4187880 | 205..85 | 605 | 100 | Minus |
2R | 25286936 | 2R | 4187594..4187696 | 304..202 | 515 | 100 | Minus |
2R | 25286936 | 2R | 4187944..4188014 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:50:16 has no hits.
BS11084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:24 Download gff for
BS11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RA | 1..288 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:47 Download gff for
BS11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RA | 138..439 | 10..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:28 Download gff for
BS11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 114..399 | 17..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:24 Download gff for
BS11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RA | 138..439 | 10..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:55 Download gff for
BS11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 114..399 | 17..302 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:55 Download gff for
BS11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4187596..4187692 | 206..302 | 100 | <- | Minus |
2R | 4187760..4187879 | 86..205 | 100 | <- | Minus |
2R | 4187946..4188014 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:28 Download gff for
BS11084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 75451..75519 | 17..85 | 100 | | Minus |
arm_2R | 75101..75197 | 206..302 | 100 | <- | Minus |
arm_2R | 75265..75384 | 86..205 | 100 | <- | Minus |
BS11084.pep Sequence
Translation from 16 to 303
> BS11084.pep
MKICGPKLSLCGLIISVWGIVQLVLMGLFFYINSVALIEDLPLEEEYHSL
EDFYAAANRAYNQNAYNCWIAACIYVLTLLLSAQQFYMNSRVTAN*
BS11084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-PA | 95 | CG40127-PA | 1..95 | 1..95 | 497 | 100 | Plus |
CG40127-PB | 95 | CG40127-PB | 1..95 | 1..95 | 497 | 100 | Plus |
CG11269-PA | 107 | CG11269-PA | 3..75 | 4..76 | 156 | 41.1 | Plus |