Clone BS11084 Report

Search the DGRC for BS11084

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG40127-RA
Protein status:BS11084.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11084.3prime Sequence

318 bp (317 high quality bases) assembled on 2006-04-19

> BS11084.3prime
ATGGTCTAGAAAGCTTTTAGTTGGCAGTTACTCTGCTATTCATGTAAAAT
TGCTGGGCGGAGAGCAACAAAGTCAAAACATATATACATGCGGCAATCCA
GCAGTTGTAGGCATTCTGATTGTATGCTCTATTTGCAGCTGCATAAAAAT
CTTCCAACGAATGGTATTCCTCCTCAAGAGGTAAGTCCTCAATGAGGGCT
ACACTATTTATGTAGAAGAATAGACCCATTAAAACCAATTGGACAATACC
CCAAACAGAGATAATAAGACCACAAAGTGATAGTTTCGGGCCACAGATTT
TCATGTCGACTGATAACT

BS11084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG40127-PA 288 CG40127-RA 1..288 304..17 1440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG40127-RA 505 CG40127-RA 114..401 304..17 1440 100 Minus
CG40127-RB 1160 CG40127-RB 114..401 304..17 1440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4187760..4187880 116..236 605 100 Plus
2R 25286936 2R 4187594..4187696 17..119 515 100 Plus
2R 25286936 2R 4187944..4188014 234..304 355 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:25:09 has no hits.

BS11084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:28 Download gff for BS11084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40127-PA 1..288 17..304 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:14 Download gff for BS11084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40127-RB 109..410 5..311 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:39 Download gff for BS11084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40127-RB 109..410 5..311 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:39 Download gff for BS11084.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 4187585..4187692 5..115 96 <- Plus
2R 4187760..4187879 116..235 100 <- Plus
2R 4187946..4188019 236..311 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:14 Download gff for BS11084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 75090..75197 5..115 96 <- Plus
arm_2R 75265..75384 116..235 100 <- Plus
arm_2R 75451..75524 236..311 94   Plus

BS11084.5prime Sequence

318 bp (317 high quality bases) assembled on 2006-04-19

> BS11084.5prime
GAAGTTATCAGTCGACATGAAAATCTGTGGCCCGAAACTATCACTTTGTG
GTCTTATTATCTCTGTTTGGGGTATTGTCCAATTGGTTTTAATGGGTCTA
TTCTTCTACATAAATAGTGTAGCCCTCATTGAGGACTTACCTCTTGAGGA
GGAATACCATTCGTTGGAAGATTTTTATGCAGCTGCAAATAGAGCATACA
ATCAGAATGCCTACAACTGCTGGATTGCCGCATGTATATATGTTTTGACT
TTGTTGCTCTCCGCCCAGCAATTTTACATGAATAGCAGAGTAACTGCCAA
CTAAAAGCTTTCTAGACC

BS11084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG40127-PA 288 CG40127-RA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG40127-RA 505 CG40127-RA 114..401 17..304 1440 100 Plus
CG40127-RB 1160 CG40127-RB 114..401 17..304 1440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4187760..4187880 205..85 605 100 Minus
2R 25286936 2R 4187594..4187696 304..202 515 100 Minus
2R 25286936 2R 4187944..4188014 87..17 355 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:16:57 has no hits.

BS11084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:28 Download gff for BS11084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40127-PA 1..288 17..304 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:37:57 Download gff for BS11084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40127-RB 109..410 10..316 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:12 Download gff for BS11084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40127-RB 109..410 10..316 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:12 Download gff for BS11084.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 4187585..4187692 206..316 96 <- Minus
2R 4187760..4187879 86..205 100 <- Minus
2R 4187946..4188019 10..85 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:37:57 Download gff for BS11084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 75090..75197 206..316 96 <- Minus
arm_2R 75265..75384 86..205 100 <- Minus
arm_2R 75451..75524 10..85 94   Minus

BS11084.complete Sequence

320 bp assembled on 2006-11-01

GenBank Submission: FJ636764

> BS11084.complete
GAAGTTATCAGTCGACATGAAAATCTGTGGCCCGAAACTATCACTTTGTG
GTCTTATTATCTCTGTTTGGGGTATTGTCCAATTGGTTTTAATGGGTCTA
TTCTTCTACATAAATAGTGTAGCCCTCATTGAGGACTTACCTCTTGAGGA
GGAATACCATTCGTTGGAAGATTTTTATGCAGCTGCAAATAGAGCATACA
ATCAGAATGCCTACAACTGCTGGATTGCCGCATGTATATATGTTTTGACT
TTGTTGCTCTCCGCCCAGCAATTTTACATGAATAGCAGAGTAACTGCCAA
CTAAAAGCTTTCTAGACCAT

BS11084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG40127-RA 288 CG40127-PA 1..288 17..304 1440 100 Plus
CG40127-RB 288 CG40127-PB 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG40127-RA 505 CG40127-RA 114..401 17..304 1440 100 Plus
CG40127-RB 1160 CG40127-RB 114..401 17..304 1440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4187760..4187880 205..85 605 100 Minus
2R 25286936 2R 4187594..4187696 304..202 515 100 Minus
2R 25286936 2R 4187944..4188014 87..17 355 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:50:16 has no hits.

BS11084.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:24 Download gff for BS11084.complete
Subject Subject Range Query Range Percent Splice Strand
CG40127-RA 1..288 17..304 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:47 Download gff for BS11084.complete
Subject Subject Range Query Range Percent Splice Strand
CG40127-RA 138..439 10..316 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:28 Download gff for BS11084.complete
Subject Subject Range Query Range Percent Splice Strand
CG40127-RB 114..399 17..302 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:24 Download gff for BS11084.complete
Subject Subject Range Query Range Percent Splice Strand
CG40127-RA 138..439 10..316 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:55 Download gff for BS11084.complete
Subject Subject Range Query Range Percent Splice Strand
CG40127-RB 114..399 17..302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:55 Download gff for BS11084.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4187596..4187692 206..302 100 <- Minus
2R 4187760..4187879 86..205 100 <- Minus
2R 4187946..4188014 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:28 Download gff for BS11084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 75451..75519 17..85 100   Minus
arm_2R 75101..75197 206..302 100 <- Minus
arm_2R 75265..75384 86..205 100 <- Minus

BS11084.pep Sequence

Translation from 16 to 303

> BS11084.pep
MKICGPKLSLCGLIISVWGIVQLVLMGLFFYINSVALIEDLPLEEEYHSL
EDFYAAANRAYNQNAYNCWIAACIYVLTLLLSAQQFYMNSRVTAN*

BS11084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG40127-PA 95 CG40127-PA 1..95 1..95 497 100 Plus
CG40127-PB 95 CG40127-PB 1..95 1..95 497 100 Plus
CG11269-PA 107 CG11269-PA 3..75 4..76 156 41.1 Plus