Clone Sequence Records
BS11086.3prime Sequence
315 bp (314 high quality bases) assembled on 2006-04-19
> BS11086.3prime
ATGGTCTAGAAAGCTTCTAGTCCTTCGTGGGACTGACGTTCTGTATGAGC
GTGATGTTGTCGCCCTTGAGCATGATCCTCCCGAGGTTGCGGCGCTGCCG
GGTCTTCACATAGACTTCCTCGGCGTCGTCCAGCACCAGATTCATGTACT
CATCGAATCCCACAATGTGGCCCTCGATGCGCAGCGATATGTTCTCGTAT
AACCAAACTTGCACGCGGGACCGGTTCTGCAGGTAACGGAAGATCAGGTT
GATGGGCTGCACCATCACCTTCTGCACCTTGGGATTTCCTTTGAACGACA
TGTCGACTGATAACT
BS11086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18591-PA | 285 | CG18591-RA | 1..285 | 301..17 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmE-RA | 521 | CG18591-RA | 108..392 | 301..17 | 1425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7885059..7885343 | 17..301 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:01:38 has no hits.
BS11086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:21 Download gff for
BS11086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18591-PA | 1..285 | 17..301 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:31 Download gff for
BS11086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18591-PA | 1..285 | 17..301 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:37:25 Download gff for
BS11086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmE-RA | 98..394 | 13..311 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:05 Download gff for
BS11086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmE-RA | 98..394 | 13..311 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:05 Download gff for
BS11086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7885057..7885353 | 13..311 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:37:25 Download gff for
BS11086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7885057..7885353 | 13..311 | 98 | | Plus |
BS11086.5prime Sequence
315 bp (314 high quality bases) assembled on 2006-04-19
> BS11086.5prime
GAAGTTATCAGTCGACATGTCGTTCAAAGGAAATCCCAAGGTGCAGAAGG
TGATGGTGCAGCCCATCAACCTGATCTTCCGTTACCTGCAGAACCGGTCC
CGCGTGCAAGTTTGGTTATACGAGAACATATCGCTGCGCATCGAGGGCCA
CATTGTGGGATTCGATGAGTACATGAATCTGGTGCTGGACGACGCCGAGG
AAGTCTATGTGAAGACCCGGCAGCGCCGCAACCTCGGGAGGATCATGCTC
AAGGGCGACAACATCACGCTCATACAGAACGTCAGTCCCACGAAGGACTA
GAAGCTTTCTAGACC
BS11086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18591-PA | 285 | CG18591-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmE-RA | 521 | CG18591-RA | 108..392 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7885059..7885343 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 05:25:54 has no hits.
BS11086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:22 Download gff for
BS11086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18591-PA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:32 Download gff for
BS11086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18591-PA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:12:56 Download gff for
BS11086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmE-RA | 98..394 | 7..305 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:03 Download gff for
BS11086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmE-RA | 98..394 | 7..305 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:03 Download gff for
BS11086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7885057..7885353 | 7..305 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:12:56 Download gff for
BS11086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7885057..7885353 | 7..305 | 98 | | Minus |
BS11086.complete Sequence
317 bp assembled on 2006-11-01
GenBank Submission: FJ636765
> BS11086.complete
GAAGTTATCAGTCGACATGTCGTTCAAAGGAAATCCCAAGGTGCAGAAGG
TGATGGTGCAGCCCATCAACCTGATCTTCCGTTACCTGCAGAACCGGTCC
CGCGTGCAAGTTTGGTTATACGAGAACATATCGCTGCGCATCGAGGGCCA
CATTGTGGGATTCGATGAGTACATGAATCTGGTGCTGGACGACGCCGAGG
AAGTCTATGTGAAGACCCGGCAGCGCCGCAACCTCGGGAGGATCATGCTC
AAGGGCGACAACATCACGCTCATACAGAACGTCAGTCCCACGAAGGACTA
GAAGCTTTCTAGACCAT
BS11086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmE-RA | 285 | CG18591-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmE-RA | 521 | CG18591-RA | 108..392 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7885059..7885343 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:20 has no hits.
BS11086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:27 Download gff for
BS11086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18591-RA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:48 Download gff for
BS11086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18591-RA | 73..369 | 7..305 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:33 Download gff for
BS11086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmE-RA | 108..392 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:27 Download gff for
BS11086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18591-RA | 73..369 | 7..305 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:04 Download gff for
BS11086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmE-RA | 108..392 | 17..301 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:04 Download gff for
BS11086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7885059..7885343 | 17..301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:33 Download gff for
BS11086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7885059..7885343 | 17..301 | 100 | | Minus |
BS11086.pep Sequence
Translation from 16 to 300
> BS11086.pep
MSFKGNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFD
EYMNLVLDDAEEVYVKTRQRRNLGRIMLKGDNITLIQNVSPTKD*
BS11086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmE-PA | 94 | CG18591-PA | 1..94 | 1..94 | 482 | 100 | Plus |
