Clone Sequence Records
BS11087.3prime Sequence
327 bp (326 high quality bases) assembled on 2006-04-19
> BS11087.3prime
ATGGTCTAGAAAGCTTCTAATTTGTGGACACCGATTGACTGATCTTGGCT
CGGCCAGCCGGCTCCTTGGGATCCGTCCAGGCCCAATCGGCATAGTGGAC
GCAACGGCCGAGTTCCTCGGAGTAGAGCTGCGACTGCGGACAGCGCTGGA
GACGAGCCCGTGTGCCCTGCTTATCGCACACCCAGTAGGCCGTGGGATCC
CAGTAATTCCGGAACATGCGGTTCACCTCATCTAGACCCTGGCAGCTGGG
CTCGCCATTGTGCTCATGCGGCCGGCGCTTCTGAATGGGCAGATGTGCTG
ATGCGGTAGGCATGTCGACTGATAACT
BS11087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-PA | 297 | CG3348-RA | 1..297 | 313..17 | 1485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-RA | 543 | CG3348-RA | 122..418 | 313..17 | 1485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27291660..27291956 | 17..313 | 1485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:18:46 has no hits.
BS11087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:24 Download gff for
BS11087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-PA | 1..297 | 17..313 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:34 Download gff for
BS11087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-PA | 1..297 | 17..313 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:36:39 Download gff for
BS11087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..426 | 8..313 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:44 Download gff for
BS11087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..426 | 8..313 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:07:44 Download gff for
BS11087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27291652..27291956 | 8..313 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:36:39 Download gff for
BS11087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23117374..23117678 | 8..313 | 98 | | Plus |
BS11087.5prime Sequence
327 bp (326 high quality bases) assembled on 2006-04-19
> BS11087.5prime
GAAGTTATCAGTCGACATGCCTACCGCATCAGCACATCTGCCCATTCAGA
AGCGCCGGCCGCATGAGCACAATGGCGAGCCCAGCTGCCAGGGTCTAGAT
GAGGTGAACCGCATGTTCCGGAATTACTGGGATCCCACGGCCTACTGGGT
GTGCGATAAGCAGGGCACACGGGCTCGTCTCCAGCGCTGTCCGCAGTCGC
AGCTCTACTCCGAGGAACTCGGCCGTTGCGTCCACTATGCCGATTGGGCC
TGGACGGATCCCAAGGAGCCGGCTGGCCGAGCCAAGATCAGTCAATCGGT
GTCCACAAATTAGAAGCTTTCTAGACC
BS11087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-PA | 297 | CG3348-RA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-RA | 543 | CG3348-RA | 122..418 | 17..313 | 1485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27291660..27291956 | 313..17 | 1485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:00:19 has no hits.
BS11087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:25 Download gff for
BS11087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-PA | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:35 Download gff for
BS11087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-PA | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:08 Download gff for
BS11087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..426 | 17..322 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:57 Download gff for
BS11087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..426 | 17..322 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:57 Download gff for
BS11087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27291652..27291956 | 17..322 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:08 Download gff for
BS11087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23117374..23117678 | 17..322 | 98 | | Minus |
BS11087.complete Sequence
329 bp assembled on 2006-11-01
GenBank Submission: FJ636766
> BS11087.complete
GAAGTTATCAGTCGACATGCCTACCGCATCAGCACATCTGCCCATTCAGA
AGCGCCGGCCGCATGAGCACAATGGCGAGCCCAGCTGCCAGGGTCTAGAT
GAGGTGAACCGCATGTTCCGGAATTACTGGGATCCCACGGCCTACTGGGT
GTGCGATAAGCAGGGCACACGGGCTCGTCTCCAGCGCTGTCCGCAGTCGC
AGCTCTACTCCGAGGAACTCGGCCGTTGCGTCCACTATGCCGATTGGGCC
TGGACGGATCCCAAGGAGCCGGCTGGCCGAGCCAAGATCAGTCAATCGGT
GTCCACAAATTAGAAGCTTTCTAGACCAT
BS11087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-RA | 297 | CG3348-PA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-RA | 543 | CG3348-RA | 122..418 | 17..313 | 1485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27291660..27291956 | 313..17 | 1485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:09:36 has no hits.
BS11087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:28 Download gff for
BS11087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:50 Download gff for
BS11087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 102..406 | 17..322 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:41 Download gff for
BS11087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..418 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:28 Download gff for
BS11087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 102..406 | 17..322 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:43 Download gff for
BS11087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..418 | 17..313 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:43 Download gff for
BS11087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27291660..27291956 | 17..313 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:41 Download gff for
BS11087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23117382..23117678 | 17..313 | 100 | | Minus |
BS11087.pep Sequence
Translation from 16 to 312
> BS11087.pep
MPTASAHLPIQKRRPHEHNGEPSCQGLDEVNRMFRNYWDPTAYWVCDKQG
TRARLQRCPQSQLYSEELGRCVHYADWAWTDPKEPAGRAKISQSVSTN*
BS11087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-PA | 98 | CG3348-PA | 1..98 | 1..98 | 555 | 100 | Plus |
CG14246-PC | 93 | CG14246-PC | 5..87 | 17..85 | 190 | 38.6 | Plus |
CG14246-PB | 93 | CG14246-PB | 5..87 | 17..85 | 190 | 38.6 | Plus |
CG14246-PA | 93 | CG14246-PA | 5..87 | 17..85 | 190 | 38.6 | Plus |
CG14645-PA | 97 | CG14645-PA | 21..95 | 16..89 | 143 | 33.3 | Plus |