Clone BS11087 Report

Search the DGRC for BS11087

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG3348-RA
Protein status:BS11087.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11087.3prime Sequence

327 bp (326 high quality bases) assembled on 2006-04-19

> BS11087.3prime
ATGGTCTAGAAAGCTTCTAATTTGTGGACACCGATTGACTGATCTTGGCT
CGGCCAGCCGGCTCCTTGGGATCCGTCCAGGCCCAATCGGCATAGTGGAC
GCAACGGCCGAGTTCCTCGGAGTAGAGCTGCGACTGCGGACAGCGCTGGA
GACGAGCCCGTGTGCCCTGCTTATCGCACACCCAGTAGGCCGTGGGATCC
CAGTAATTCCGGAACATGCGGTTCACCTCATCTAGACCCTGGCAGCTGGG
CTCGCCATTGTGCTCATGCGGCCGGCGCTTCTGAATGGGCAGATGTGCTG
ATGCGGTAGGCATGTCGACTGATAACT

BS11087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-PA 297 CG3348-RA 1..297 313..17 1485 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-RA 543 CG3348-RA 122..418 313..17 1485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27291660..27291956 17..313 1485 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:18:46 has no hits.

BS11087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:24 Download gff for BS11087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-PA 1..297 17..313 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:34 Download gff for BS11087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-PA 1..297 17..313 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:36:39 Download gff for BS11087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..426 8..313 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:44 Download gff for BS11087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..426 8..313 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:07:44 Download gff for BS11087.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27291652..27291956 8..313 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:36:39 Download gff for BS11087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23117374..23117678 8..313 98   Plus

BS11087.5prime Sequence

327 bp (326 high quality bases) assembled on 2006-04-19

> BS11087.5prime
GAAGTTATCAGTCGACATGCCTACCGCATCAGCACATCTGCCCATTCAGA
AGCGCCGGCCGCATGAGCACAATGGCGAGCCCAGCTGCCAGGGTCTAGAT
GAGGTGAACCGCATGTTCCGGAATTACTGGGATCCCACGGCCTACTGGGT
GTGCGATAAGCAGGGCACACGGGCTCGTCTCCAGCGCTGTCCGCAGTCGC
AGCTCTACTCCGAGGAACTCGGCCGTTGCGTCCACTATGCCGATTGGGCC
TGGACGGATCCCAAGGAGCCGGCTGGCCGAGCCAAGATCAGTCAATCGGT
GTCCACAAATTAGAAGCTTTCTAGACC

BS11087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-PA 297 CG3348-RA 1..297 17..313 1485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-RA 543 CG3348-RA 122..418 17..313 1485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27291660..27291956 313..17 1485 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:00:19 has no hits.

BS11087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:25 Download gff for BS11087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-PA 1..297 17..313 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:35 Download gff for BS11087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-PA 1..297 17..313 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:08 Download gff for BS11087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..426 17..322 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:57 Download gff for BS11087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..426 17..322 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:57 Download gff for BS11087.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27291652..27291956 17..322 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:08 Download gff for BS11087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23117374..23117678 17..322 98   Minus

BS11087.complete Sequence

329 bp assembled on 2006-11-01

GenBank Submission: FJ636766

> BS11087.complete
GAAGTTATCAGTCGACATGCCTACCGCATCAGCACATCTGCCCATTCAGA
AGCGCCGGCCGCATGAGCACAATGGCGAGCCCAGCTGCCAGGGTCTAGAT
GAGGTGAACCGCATGTTCCGGAATTACTGGGATCCCACGGCCTACTGGGT
GTGCGATAAGCAGGGCACACGGGCTCGTCTCCAGCGCTGTCCGCAGTCGC
AGCTCTACTCCGAGGAACTCGGCCGTTGCGTCCACTATGCCGATTGGGCC
TGGACGGATCCCAAGGAGCCGGCTGGCCGAGCCAAGATCAGTCAATCGGT
GTCCACAAATTAGAAGCTTTCTAGACCAT

BS11087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-RA 297 CG3348-PA 1..297 17..313 1485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-RA 543 CG3348-RA 122..418 17..313 1485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27291660..27291956 313..17 1485 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:09:36 has no hits.

BS11087.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:28 Download gff for BS11087.complete
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 1..297 17..313 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:50 Download gff for BS11087.complete
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 102..406 17..322 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:41 Download gff for BS11087.complete
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..418 17..313 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:28 Download gff for BS11087.complete
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 102..406 17..322 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:43 Download gff for BS11087.complete
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..418 17..313 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:43 Download gff for BS11087.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27291660..27291956 17..313 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:41 Download gff for BS11087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23117382..23117678 17..313 100   Minus

BS11087.pep Sequence

Translation from 16 to 312

> BS11087.pep
MPTASAHLPIQKRRPHEHNGEPSCQGLDEVNRMFRNYWDPTAYWVCDKQG
TRARLQRCPQSQLYSEELGRCVHYADWAWTDPKEPAGRAKISQSVSTN*

BS11087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-PA 98 CG3348-PA 1..98 1..98 555 100 Plus
CG14246-PC 93 CG14246-PC 5..87 17..85 190 38.6 Plus
CG14246-PB 93 CG14246-PB 5..87 17..85 190 38.6 Plus
CG14246-PA 93 CG14246-PA 5..87 17..85 190 38.6 Plus
CG14645-PA 97 CG14645-PA 21..95 16..89 143 33.3 Plus