Clone Sequence Records
BS11088.5prime Sequence
369 bp (368 high quality bases) assembled on 2006-04-19
> BS11088.5prime
GAAGTTATCAGTCGACATGTTCAAGATCCTGCTTGTCTGTTCTCTCGCCG
CCCTGGTGGCCGCCAACGCTAATGTGGAGGTCAAGGAGCTGGTCAACGAT
GTCCAGCCCGATGGCTTTGTCAGCAAGTTGGTCCTCGACGACGGATCTGC
CTCCTCCGCCACCGGAGACATCCACGGCAACATCGACGGAGTCTTCGAGT
GGATCTCCCCCGAGGGTGTCCATGTGCGAGTGAGCTACAAGGCTGACGAG
AACGGATACCAGCCCCAGAGTGACCTGCTGCCCACTCCTCCTCCGATCCC
AGCTGCCATCCTGAAGGCTATCGCCTACATCGAGGCTAACCCCAGCAAGA
ACTAAAAGCTTTCTAGACC
BS11088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2043-PA | 339 | Lcp3-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
CG2044-PA | 339 | Lcp4-RA | 214..315 | 230..331 | 335 | 93.1 | Plus |
CG2044-PA | 339 | Lcp4-RA | 61..119 | 77..135 | 195 | 93.2 | Plus |
CG2044-PA | 339 | Lcp4-RA | 155..200 | 171..216 | 155 | 93.4 | Plus |
CG7941-PA | 405 | CG7941-RA | 286..320 | 278..312 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp3-RB | 730 | CG2043-RB | 180..518 | 17..355 | 1695 | 100 | Plus |
Lcp3-RA | 513 | CG2043-RA | 47..385 | 17..355 | 1695 | 100 | Plus |
Lcp4-RB | 527 | CG2044-RB | 43..382 | 10..349 | 995 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8435557..8435883 | 29..355 | 1635 | 100 | Plus |
2R | 25286936 | 2R | 8437765..8438085 | 29..349 | 930 | 86 | Plus |
3L | 28110227 | 3L | 10890454..10890525 | 241..312 | 240 | 88.9 | Plus |
3L | 28110227 | 3L | 10892254..10892325 | 241..312 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:00:17 has no hits.
BS11088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:27 Download gff for
BS11088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-PA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:38 Download gff for
BS11088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2043-PA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:52:26 Download gff for
BS11088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 42..385 | 12..355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:28:06 Download gff for
BS11088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 42..385 | 12..355 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:28:06 Download gff for
BS11088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8435557..8435883 | 29..355 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:52:26 Download gff for
BS11088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4323062..4323388 | 29..355 | 100 | | Plus |
BS11088.3prime Sequence
369 bp (368 high quality bases) assembled on 2006-04-19
> BS11088.3prime
ATGGTCTAGAAAGCTTTTAGTTCTTGCTGGGGTTAGCCTCGATGTAGGCG
ATAGCCTTCAGGATGGCAGCTGGGATCGGAGGAGGAGTGGGCAGCAGGTC
ACTCTGGGGCTGGTATCCGTTCTCGTCAGCCTTGTAGCTCACTCGCACAT
GGACACCCTCGGGGGAGATCCACTCGAAGACTCCGTCGATGTTGCCGTGG
ATGTCTCCGGTGGCGGAGGAGGCAGATCCGTCGTCGAGGACCAACTTGCT
GACAAAGCCATCGGGCTGGACATCGTTGACCAGCTCCTTGACCTCCACAT
TAGCGTTGGCGGCCACCAGGGCGGCGAGAGAACAGACAAGCAGGATCTTG
AACATGTCGACTGATAACT
BS11088.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2043-PA | 339 | Lcp3-RA | 1..339 | 355..17 | 1695 | 100 | Minus |
CG2044-PA | 339 | Lcp4-RA | 214..315 | 142..41 | 335 | 93.1 | Minus |
CG2044-PA | 339 | Lcp4-RA | 61..119 | 295..237 | 195 | 93.2 | Minus |
CG2044-PA | 339 | Lcp4-RA | 155..200 | 201..156 | 155 | 93.4 | Minus |
CG7941-PA | 405 | CG7941-RA | 286..320 | 94..60 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp3-RB | 730 | CG2043-RB | 180..518 | 355..17 | 1695 | 100 | Minus |
Lcp3-RA | 513 | CG2043-RA | 47..385 | 355..17 | 1695 | 100 | Minus |
Lcp4-RB | 527 | CG2044-RB | 43..382 | 362..23 | 995 | 86.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8435557..8435883 | 343..17 | 1635 | 100 | Minus |
2R | 25286936 | 2R | 8437765..8438085 | 343..23 | 930 | 86 | Minus |
3L | 28110227 | 3L | 10890454..10890525 | 131..60 | 240 | 88.9 | Minus |
3L | 28110227 | 3L | 10892254..10892325 | 131..60 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:42:35 has no hits.
BS11088.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:26 Download gff for
BS11088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-PA | 1..339 | 17..355 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:37 Download gff for
BS11088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2043-PA | 1..339 | 17..355 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:57:38 Download gff for
BS11088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 42..385 | 17..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:34 Download gff for
BS11088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 42..385 | 17..360 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:34 Download gff for
BS11088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8435557..8435883 | 17..343 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:57:38 Download gff for
BS11088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4323062..4323388 | 17..343 | 100 | | Minus |
BS11088.complete Sequence
371 bp assembled on 2006-11-01
GenBank Submission: FJ636767
> BS11088.complete
GAAGTTATCAGTCGACATGTTCAAGATCCTGCTTGTCTGTTCTCTCGCCG
CCCTGGTGGCCGCCAACGCTAATGTGGAGGTCAAGGAGCTGGTCAACGAT
GTCCAGCCCGATGGCTTTGTCAGCAAGTTGGTCCTCGACGACGGATCTGC
CTCCTCCGCCACCGGAGACATCCACGGCAACATCGACGGAGTCTTCGAGT
GGATCTCCCCCGAGGGTGTCCATGTGCGAGTGAGCTACAAGGCTGACGAG
AACGGATACCAGCCCCAGAGTGACCTGCTGCCCACTCCTCCTCCGATCCC
AGCTGCCATCCTGAAGGCTATCGCCTACATCGAGGCTAACCCCAGCAAGA
ACTAAAAGCTTTCTAGACCAT
BS11088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp3-RB | 339 | CG2043-PB | 1..339 | 17..355 | 1695 | 100 | Plus |
Lcp3-RA | 339 | CG2043-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
Lcp4-RB | 339 | CG2044-PB | 1..333 | 17..349 | 990 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp3-RB | 730 | CG2043-RB | 180..518 | 17..355 | 1695 | 100 | Plus |
Lcp3-RA | 513 | CG2043-RA | 47..385 | 17..355 | 1695 | 100 | Plus |
Lcp4-RB | 527 | CG2044-RB | 43..382 | 10..349 | 995 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8435557..8435883 | 29..355 | 1635 | 100 | Plus |
2R | 25286936 | 2R | 8437765..8438085 | 29..349 | 930 | 86 | Plus |
3L | 28110227 | 3L | 10890454..10890525 | 241..312 | 240 | 88.9 | Plus |
3L | 28110227 | 3L | 10892254..10892325 | 241..312 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:36:44 has no hits.
BS11088.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:29 Download gff for
BS11088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:51 Download gff for
BS11088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 41..384 | 12..355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:46 Download gff for
BS11088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 52..383 | 22..353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:29 Download gff for
BS11088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 41..384 | 12..355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:28 Download gff for
BS11088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 52..383 | 22..353 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:28 Download gff for
BS11088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8435553..8435881 | 22..353 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:46 Download gff for
BS11088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4323058..4323386 | 22..353 | 98 | | Plus |
BS11088.pep Sequence
Translation from 16 to 354
> BS11088.pep
MFKILLVCSLAALVAANANVEVKELVNDVQPDGFVSKLVLDDGSASSATG
DIHGNIDGVFEWISPEGVHVRVSYKADENGYQPQSDLLPTPPPIPAAILK
AIAYIEANPSKN*
BS11088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp3-PB | 112 | CG2043-PB | 1..112 | 1..112 | 573 | 100 | Plus |
Lcp3-PA | 112 | CG2043-PA | 1..112 | 1..112 | 573 | 100 | Plus |
Lcp4-PB | 112 | CG2044-PB | 1..111 | 1..111 | 512 | 88.3 | Plus |
Lcp4-PA | 112 | CG2044-PA | 1..111 | 1..111 | 512 | 88.3 | Plus |
Lcp1-PB | 130 | CG11650-PB | 1..121 | 1..109 | 281 | 46.3 | Plus |