Clone BS11088 Report

Search the DGRC for BS11088

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptLcp3-RA
Protein status:BS11088.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11088.5prime Sequence

369 bp (368 high quality bases) assembled on 2006-04-19

> BS11088.5prime
GAAGTTATCAGTCGACATGTTCAAGATCCTGCTTGTCTGTTCTCTCGCCG
CCCTGGTGGCCGCCAACGCTAATGTGGAGGTCAAGGAGCTGGTCAACGAT
GTCCAGCCCGATGGCTTTGTCAGCAAGTTGGTCCTCGACGACGGATCTGC
CTCCTCCGCCACCGGAGACATCCACGGCAACATCGACGGAGTCTTCGAGT
GGATCTCCCCCGAGGGTGTCCATGTGCGAGTGAGCTACAAGGCTGACGAG
AACGGATACCAGCCCCAGAGTGACCTGCTGCCCACTCCTCCTCCGATCCC
AGCTGCCATCCTGAAGGCTATCGCCTACATCGAGGCTAACCCCAGCAAGA
ACTAAAAGCTTTCTAGACC

BS11088.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2043-PA 339 Lcp3-RA 1..339 17..355 1695 100 Plus
CG2044-PA 339 Lcp4-RA 214..315 230..331 335 93.1 Plus
CG2044-PA 339 Lcp4-RA 61..119 77..135 195 93.2 Plus
CG2044-PA 339 Lcp4-RA 155..200 171..216 155 93.4 Plus
CG7941-PA 405 CG7941-RA 286..320 278..312 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp3-RB 730 CG2043-RB 180..518 17..355 1695 100 Plus
Lcp3-RA 513 CG2043-RA 47..385 17..355 1695 100 Plus
Lcp4-RB 527 CG2044-RB 43..382 10..349 995 86.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8435557..8435883 29..355 1635 100 Plus
2R 25286936 2R 8437765..8438085 29..349 930 86 Plus
3L 28110227 3L 10890454..10890525 241..312 240 88.9 Plus
3L 28110227 3L 10892254..10892325 241..312 210 86.1 Plus
Blast to na_te.dros performed on 2015-02-12 20:00:17 has no hits.

BS11088.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:27 Download gff for BS11088.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp3-PA 1..339 17..355 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:38 Download gff for BS11088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2043-PA 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:52:26 Download gff for BS11088.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 42..385 12..355 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:28:06 Download gff for BS11088.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 42..385 12..355 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:28:06 Download gff for BS11088.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8435557..8435883 29..355 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:52:26 Download gff for BS11088.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4323062..4323388 29..355 100   Plus

BS11088.3prime Sequence

369 bp (368 high quality bases) assembled on 2006-04-19

> BS11088.3prime
ATGGTCTAGAAAGCTTTTAGTTCTTGCTGGGGTTAGCCTCGATGTAGGCG
ATAGCCTTCAGGATGGCAGCTGGGATCGGAGGAGGAGTGGGCAGCAGGTC
ACTCTGGGGCTGGTATCCGTTCTCGTCAGCCTTGTAGCTCACTCGCACAT
GGACACCCTCGGGGGAGATCCACTCGAAGACTCCGTCGATGTTGCCGTGG
ATGTCTCCGGTGGCGGAGGAGGCAGATCCGTCGTCGAGGACCAACTTGCT
GACAAAGCCATCGGGCTGGACATCGTTGACCAGCTCCTTGACCTCCACAT
TAGCGTTGGCGGCCACCAGGGCGGCGAGAGAACAGACAAGCAGGATCTTG
AACATGTCGACTGATAACT

BS11088.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2043-PA 339 Lcp3-RA 1..339 355..17 1695 100 Minus
CG2044-PA 339 Lcp4-RA 214..315 142..41 335 93.1 Minus
CG2044-PA 339 Lcp4-RA 61..119 295..237 195 93.2 Minus
CG2044-PA 339 Lcp4-RA 155..200 201..156 155 93.4 Minus
CG7941-PA 405 CG7941-RA 286..320 94..60 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp3-RB 730 CG2043-RB 180..518 355..17 1695 100 Minus
Lcp3-RA 513 CG2043-RA 47..385 355..17 1695 100 Minus
Lcp4-RB 527 CG2044-RB 43..382 362..23 995 86.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8435557..8435883 343..17 1635 100 Minus
2R 25286936 2R 8437765..8438085 343..23 930 86 Minus
3L 28110227 3L 10890454..10890525 131..60 240 88.9 Minus
3L 28110227 3L 10892254..10892325 131..60 210 86.1 Minus
Blast to na_te.dros performed on 2015-02-09 03:42:35 has no hits.

BS11088.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:26 Download gff for BS11088.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcp3-PA 1..339 17..355 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:37 Download gff for BS11088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2043-PA 1..339 17..355 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:57:38 Download gff for BS11088.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 42..385 17..360 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:34 Download gff for BS11088.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 42..385 17..360 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:34 Download gff for BS11088.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8435557..8435883 17..343 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:57:38 Download gff for BS11088.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4323062..4323388 17..343 100   Minus

BS11088.complete Sequence

371 bp assembled on 2006-11-01

GenBank Submission: FJ636767

> BS11088.complete
GAAGTTATCAGTCGACATGTTCAAGATCCTGCTTGTCTGTTCTCTCGCCG
CCCTGGTGGCCGCCAACGCTAATGTGGAGGTCAAGGAGCTGGTCAACGAT
GTCCAGCCCGATGGCTTTGTCAGCAAGTTGGTCCTCGACGACGGATCTGC
CTCCTCCGCCACCGGAGACATCCACGGCAACATCGACGGAGTCTTCGAGT
GGATCTCCCCCGAGGGTGTCCATGTGCGAGTGAGCTACAAGGCTGACGAG
AACGGATACCAGCCCCAGAGTGACCTGCTGCCCACTCCTCCTCCGATCCC
AGCTGCCATCCTGAAGGCTATCGCCTACATCGAGGCTAACCCCAGCAAGA
ACTAAAAGCTTTCTAGACCAT

BS11088.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp3-RB 339 CG2043-PB 1..339 17..355 1695 100 Plus
Lcp3-RA 339 CG2043-PA 1..339 17..355 1695 100 Plus
Lcp4-RB 339 CG2044-PB 1..333 17..349 990 86.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp3-RB 730 CG2043-RB 180..518 17..355 1695 100 Plus
Lcp3-RA 513 CG2043-RA 47..385 17..355 1695 100 Plus
Lcp4-RB 527 CG2044-RB 43..382 10..349 995 86.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8435557..8435883 29..355 1635 100 Plus
2R 25286936 2R 8437765..8438085 29..349 930 86 Plus
3L 28110227 3L 10890454..10890525 241..312 240 88.9 Plus
3L 28110227 3L 10892254..10892325 241..312 210 86.1 Plus
Blast to na_te.dros performed on 2014-11-28 00:36:44 has no hits.

BS11088.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:29 Download gff for BS11088.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:51 Download gff for BS11088.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 41..384 12..355 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:46 Download gff for BS11088.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 52..383 22..353 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:29 Download gff for BS11088.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 41..384 12..355 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:28 Download gff for BS11088.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 52..383 22..353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:28 Download gff for BS11088.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8435553..8435881 22..353 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:46 Download gff for BS11088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4323058..4323386 22..353 98   Plus

BS11088.pep Sequence

Translation from 16 to 354

> BS11088.pep
MFKILLVCSLAALVAANANVEVKELVNDVQPDGFVSKLVLDDGSASSATG
DIHGNIDGVFEWISPEGVHVRVSYKADENGYQPQSDLLPTPPPIPAAILK
AIAYIEANPSKN*

BS11088.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp3-PB 112 CG2043-PB 1..112 1..112 573 100 Plus
Lcp3-PA 112 CG2043-PA 1..112 1..112 573 100 Plus
Lcp4-PB 112 CG2044-PB 1..111 1..111 512 88.3 Plus
Lcp4-PA 112 CG2044-PA 1..111 1..111 512 88.3 Plus
Lcp1-PB 130 CG11650-PB 1..121 1..109 281 46.3 Plus