Clone Sequence Records
BS11091.3prime Sequence
411 bp (410 high quality bases) assembled on 2006-04-19
> BS11091.3prime
ATGGTCTAGAAAGCTTTCAATGATGATGGTCATCTTTCTTGACGAAGCGC
AGGCCGCAGTAGCCGCAGATGTGATTTCCGGGTTTGTCCAGGTTGATGTA
CACTTTGGGATGACCCAAAGGACCATCGCCGCCGTCGCAGAAGACAACTC
GTTCGGTGCACTCCTTGGGTGGCACCTCCTCGATGAGCTTGATGCCCCAG
TTCTCGTTCACATACCGCTTGGCGTTCACGAACCGGGCATTGCGGTAGTC
CTCCTTATCGAACACTTGTCCGGTGTGTGTAACCTTCTCGATGTCGCCGC
GGCAGCTGGAGTGGCGAACGCTGGCCAGTGGGGACATCCAATTCTGTCGC
GGAAGGCCGAGTTTGGACAAATTGTTTACCAATTGCTTGCTGGCCATGTC
GACTGATAACT
BS11091.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-PA | 381 | CG8680-RA | 1..381 | 397..17 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-RC | 630 | CG8680-RC | 148..528 | 397..17 | 1905 | 100 | Minus |
CG8680-RB | 867 | CG8680-RB | 62..442 | 397..17 | 1905 | 100 | Minus |
CG8680-RA | 544 | CG8680-RA | 62..442 | 397..17 | 1905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5099736..5099913 | 88..265 | 890 | 100 | Plus |
2L | 23513712 | 2L | 5100008..5100141 | 264..397 | 670 | 100 | Plus |
2L | 23513712 | 2L | 5099602..5099674 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:59:45 has no hits.
BS11091.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:32 Download gff for
BS11091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-PA | 1..381 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:45 Download gff for
BS11091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-PA | 1..381 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:54:58 Download gff for
BS11091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..442 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:55 Download gff for
BS11091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..442 | 17..397 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:55 Download gff for
BS11091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5099602..5099673 | 17..88 | 100 | <- | Plus |
2L | 5099737..5099913 | 89..265 | 100 | <- | Plus |
2L | 5100010..5100141 | 266..397 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:54:58 Download gff for
BS11091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5099602..5099673 | 17..88 | 100 | <- | Plus |
arm_2L | 5099737..5099913 | 89..265 | 100 | <- | Plus |
arm_2L | 5100010..5100141 | 266..397 | 100 | | Plus |
BS11091.5prime Sequence
411 bp (410 high quality bases) assembled on 2006-04-19
> BS11091.5prime
GAAGTTATCAGTCGACATGGCCAGCAAGCAATTGGTAAACAATTTGTCCA
AACTCGGCCTTCCGCGACAGAATTGGATGTCCCCACTGGCCAGCGTTCGC
CACTCCAGCTGCCGCGGCGACATCGAGAAGGTTACACACACCGGACAAGT
GTTCGATAAGGAGGACTACCGCAATGCCCGGTTCGTGAACGCCAAGCGGT
ATGTGAACGAGAACTGGGGCATCAAGCTCATCGAGGAGGTGCCACCCAAG
GAGTGCACCGAACGAGTTGTCTTCTGCGACGGCGGCGATGGTCCTTTGGG
TCATCCCAAAGTGTACATCAACCTGGACAAACCCGGAAATCACATCTGCG
GCTACTGCGGCCTGCGCTTCGTCAAGAAAGATGACCATCATCATTGAAAG
CTTTCTAGACC
BS11091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-PA | 381 | CG8680-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-RC | 630 | CG8680-RC | 148..528 | 17..397 | 1905 | 100 | Plus |
CG8680-RB | 867 | CG8680-RB | 62..442 | 17..397 | 1905 | 100 | Plus |
CG8680-RA | 544 | CG8680-RA | 62..442 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5099736..5099913 | 326..149 | 890 | 100 | Minus |
2L | 23513712 | 2L | 5100008..5100141 | 150..17 | 670 | 100 | Minus |
2L | 23513712 | 2L | 5099602..5099674 | 397..325 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:54:49 has no hits.
BS11091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:33 Download gff for
BS11091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-PA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:47 Download gff for
BS11091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-PA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:39:42 Download gff for
BS11091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..442 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:57 Download gff for
BS11091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..442 | 17..397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:57 Download gff for
BS11091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5099602..5099673 | 326..397 | 100 | <- | Minus |
2L | 5099737..5099913 | 149..325 | 100 | <- | Minus |
2L | 5100010..5100141 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:39:42 Download gff for
BS11091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5099602..5099673 | 326..397 | 100 | <- | Minus |
arm_2L | 5099737..5099913 | 149..325 | 100 | <- | Minus |
arm_2L | 5100010..5100141 | 17..148 | 100 | | Minus |
BS11091.complete Sequence
413 bp assembled on 2006-11-01
GenBank Submission: FJ636768
> BS11091.complete
GAAGTTATCAGTCGACATGGCCAGCAAGCAATTGGTAAACAATTTGTCCA
AACTCGGCCTTCCGCGACAGAATTGGATGTCCCCACTGGCCAGCGTTCGC
CACTCCAGCTGCCGCGGCGACATCGAGAAGGTTACACACACCGGACAAGT
GTTCGATAAGGAGGACTACCGCAATGCCCGGTTCGTGAACGCCAAGCGGT
ATGTGAACGAGAACTGGGGCATCAAGCTCATCGAGGAGGTGCCACCCAAG
GAGTGCACCGAACGAGTTGTCTTCTGCGACGGCGGCGATGGTCCTTTGGG
TCATCCCAAAGTGTACATCAACCTGGACAAACCCGGAAATCACATCTGCG
GCTACTGCGGCCTGCGCTTCGTCAAGAAAGATGACCATCATCATTGAAAG
CTTTCTAGACCAT
BS11091.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-RC | 381 | CG8680-PC | 1..381 | 17..397 | 1905 | 100 | Plus |
CG8680-RB | 381 | CG8680-PB | 1..381 | 17..397 | 1905 | 100 | Plus |
CG8680-RA | 381 | CG8680-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-RC | 630 | CG8680-RC | 148..528 | 17..397 | 1905 | 100 | Plus |
CG8680-RB | 867 | CG8680-RB | 62..442 | 17..397 | 1905 | 100 | Plus |
CG8680-RA | 544 | CG8680-RA | 62..442 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5099736..5099913 | 326..149 | 890 | 100 | Minus |
2L | 23513712 | 2L | 5100008..5100141 | 150..17 | 670 | 100 | Minus |
2L | 23513712 | 2L | 5099602..5099674 | 397..325 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:42:36 has no hits.
BS11091.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:30 Download gff for
BS11091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:53 Download gff for
BS11091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 74..454 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:25 Download gff for
BS11091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..441 | 17..396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:31 Download gff for
BS11091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 38..418 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:05 Download gff for
BS11091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..441 | 17..396 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:05 Download gff for
BS11091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5100010..5100141 | 17..148 | 100 | | Minus |
2L | 5099603..5099673 | 326..396 | 100 | <- | Minus |
2L | 5099737..5099913 | 149..325 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:25 Download gff for
BS11091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5099737..5099913 | 149..325 | 100 | <- | Minus |
arm_2L | 5100010..5100141 | 17..148 | 100 | | Minus |
arm_2L | 5099603..5099673 | 326..396 | 100 | <- | Minus |
BS11091.pep Sequence
Translation from 16 to 396
> BS11091.pep
MASKQLVNNLSKLGLPRQNWMSPLASVRHSSCRGDIEKVTHTGQVFDKED
YRNARFVNAKRYVNENWGIKLIEEVPPKECTERVVFCDGGDGPLGHPKVY
INLDKPGNHICGYCGLRFVKKDDHHH*
BS11091.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-PC | 126 | CG8680-PC | 1..126 | 1..126 | 702 | 100 | Plus |
CG8680-PB | 126 | CG8680-PB | 1..126 | 1..126 | 702 | 100 | Plus |
CG8680-PA | 126 | CG8680-PA | 1..126 | 1..126 | 702 | 100 | Plus |