Clone BS11091 Report

Search the DGRC for BS11091

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG8680-RA
Protein status:BS11091.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11091.3prime Sequence

411 bp (410 high quality bases) assembled on 2006-04-19

> BS11091.3prime
ATGGTCTAGAAAGCTTTCAATGATGATGGTCATCTTTCTTGACGAAGCGC
AGGCCGCAGTAGCCGCAGATGTGATTTCCGGGTTTGTCCAGGTTGATGTA
CACTTTGGGATGACCCAAAGGACCATCGCCGCCGTCGCAGAAGACAACTC
GTTCGGTGCACTCCTTGGGTGGCACCTCCTCGATGAGCTTGATGCCCCAG
TTCTCGTTCACATACCGCTTGGCGTTCACGAACCGGGCATTGCGGTAGTC
CTCCTTATCGAACACTTGTCCGGTGTGTGTAACCTTCTCGATGTCGCCGC
GGCAGCTGGAGTGGCGAACGCTGGCCAGTGGGGACATCCAATTCTGTCGC
GGAAGGCCGAGTTTGGACAAATTGTTTACCAATTGCTTGCTGGCCATGTC
GACTGATAACT

BS11091.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-PA 381 CG8680-RA 1..381 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-RC 630 CG8680-RC 148..528 397..17 1905 100 Minus
CG8680-RB 867 CG8680-RB 62..442 397..17 1905 100 Minus
CG8680-RA 544 CG8680-RA 62..442 397..17 1905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5099736..5099913 88..265 890 100 Plus
2L 23513712 2L 5100008..5100141 264..397 670 100 Plus
2L 23513712 2L 5099602..5099674 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:59:45 has no hits.

BS11091.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:32 Download gff for BS11091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-PA 1..381 17..397 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:45 Download gff for BS11091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-PA 1..381 17..397 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:54:58 Download gff for BS11091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..442 17..397 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:55 Download gff for BS11091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..442 17..397 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:55 Download gff for BS11091.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5099602..5099673 17..88 100 <- Plus
2L 5099737..5099913 89..265 100 <- Plus
2L 5100010..5100141 266..397 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:54:58 Download gff for BS11091.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5099602..5099673 17..88 100 <- Plus
arm_2L 5099737..5099913 89..265 100 <- Plus
arm_2L 5100010..5100141 266..397 100   Plus

BS11091.5prime Sequence

411 bp (410 high quality bases) assembled on 2006-04-19

> BS11091.5prime
GAAGTTATCAGTCGACATGGCCAGCAAGCAATTGGTAAACAATTTGTCCA
AACTCGGCCTTCCGCGACAGAATTGGATGTCCCCACTGGCCAGCGTTCGC
CACTCCAGCTGCCGCGGCGACATCGAGAAGGTTACACACACCGGACAAGT
GTTCGATAAGGAGGACTACCGCAATGCCCGGTTCGTGAACGCCAAGCGGT
ATGTGAACGAGAACTGGGGCATCAAGCTCATCGAGGAGGTGCCACCCAAG
GAGTGCACCGAACGAGTTGTCTTCTGCGACGGCGGCGATGGTCCTTTGGG
TCATCCCAAAGTGTACATCAACCTGGACAAACCCGGAAATCACATCTGCG
GCTACTGCGGCCTGCGCTTCGTCAAGAAAGATGACCATCATCATTGAAAG
CTTTCTAGACC

BS11091.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-PA 381 CG8680-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-RC 630 CG8680-RC 148..528 17..397 1905 100 Plus
CG8680-RB 867 CG8680-RB 62..442 17..397 1905 100 Plus
CG8680-RA 544 CG8680-RA 62..442 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5099736..5099913 326..149 890 100 Minus
2L 23513712 2L 5100008..5100141 150..17 670 100 Minus
2L 23513712 2L 5099602..5099674 397..325 365 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:54:49 has no hits.

BS11091.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:33 Download gff for BS11091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:47 Download gff for BS11091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:39:42 Download gff for BS11091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..442 17..397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:57 Download gff for BS11091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..442 17..397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:57 Download gff for BS11091.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5099602..5099673 326..397 100 <- Minus
2L 5099737..5099913 149..325 100 <- Minus
2L 5100010..5100141 17..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:39:42 Download gff for BS11091.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5099602..5099673 326..397 100 <- Minus
arm_2L 5099737..5099913 149..325 100 <- Minus
arm_2L 5100010..5100141 17..148 100   Minus

BS11091.complete Sequence

413 bp assembled on 2006-11-01

GenBank Submission: FJ636768

> BS11091.complete
GAAGTTATCAGTCGACATGGCCAGCAAGCAATTGGTAAACAATTTGTCCA
AACTCGGCCTTCCGCGACAGAATTGGATGTCCCCACTGGCCAGCGTTCGC
CACTCCAGCTGCCGCGGCGACATCGAGAAGGTTACACACACCGGACAAGT
GTTCGATAAGGAGGACTACCGCAATGCCCGGTTCGTGAACGCCAAGCGGT
ATGTGAACGAGAACTGGGGCATCAAGCTCATCGAGGAGGTGCCACCCAAG
GAGTGCACCGAACGAGTTGTCTTCTGCGACGGCGGCGATGGTCCTTTGGG
TCATCCCAAAGTGTACATCAACCTGGACAAACCCGGAAATCACATCTGCG
GCTACTGCGGCCTGCGCTTCGTCAAGAAAGATGACCATCATCATTGAAAG
CTTTCTAGACCAT

BS11091.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-RC 381 CG8680-PC 1..381 17..397 1905 100 Plus
CG8680-RB 381 CG8680-PB 1..381 17..397 1905 100 Plus
CG8680-RA 381 CG8680-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-RC 630 CG8680-RC 148..528 17..397 1905 100 Plus
CG8680-RB 867 CG8680-RB 62..442 17..397 1905 100 Plus
CG8680-RA 544 CG8680-RA 62..442 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5099736..5099913 326..149 890 100 Minus
2L 23513712 2L 5100008..5100141 150..17 670 100 Minus
2L 23513712 2L 5099602..5099674 397..325 365 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:42:36 has no hits.

BS11091.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:30 Download gff for BS11091.complete
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:53 Download gff for BS11091.complete
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 74..454 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:25 Download gff for BS11091.complete
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..441 17..396 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:31 Download gff for BS11091.complete
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 38..418 17..397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:05 Download gff for BS11091.complete
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..441 17..396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:05 Download gff for BS11091.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5100010..5100141 17..148 100   Minus
2L 5099603..5099673 326..396 100 <- Minus
2L 5099737..5099913 149..325 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:25 Download gff for BS11091.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5099737..5099913 149..325 100 <- Minus
arm_2L 5100010..5100141 17..148 100   Minus
arm_2L 5099603..5099673 326..396 100 <- Minus

BS11091.pep Sequence

Translation from 16 to 396

> BS11091.pep
MASKQLVNNLSKLGLPRQNWMSPLASVRHSSCRGDIEKVTHTGQVFDKED
YRNARFVNAKRYVNENWGIKLIEEVPPKECTERVVFCDGGDGPLGHPKVY
INLDKPGNHICGYCGLRFVKKDDHHH*

BS11091.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-PC 126 CG8680-PC 1..126 1..126 702 100 Plus
CG8680-PB 126 CG8680-PB 1..126 1..126 702 100 Plus
CG8680-PA 126 CG8680-PA 1..126 1..126 702 100 Plus