Clone Sequence Records
BS11092.5prime Sequence
303 bp (302 high quality bases) assembled on 2006-04-19
> BS11092.5prime
GAAGTTATCAGTCGACATGTCGGGCACATCGCAGAAACACAGGAACTTCG
TTGCGGAGCCAATGGGCAACAAGTCGGTGACGGAACTGGCCGGAATTGGG
GAAACCCTCGGTGGACGCTTGAAGGACGCTGGATTCGATATGGCCTACAC
CGTTTTGGGACAGTATCTGGTGCTGAAAAAGGACGAGGAGCTGTTCAAGG
ACTGGATGAAGGAGGTGTGCCACGCCAGCTCCAAACAGGCATCCGATTGC
TACAACTGTCTCAACGATTGGTGCGAGGAGTTCTTGTAAAAGCTTTCTAG
ACC
BS11092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7380-PA | 273 | CG7380-RA | 1..273 | 17..289 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baf-RB | 1022 | CG7380-RB | 145..419 | 15..289 | 1375 | 100 | Plus |
baf-RA | 607 | CG7380-RA | 145..419 | 15..289 | 1375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8029815..8029962 | 142..289 | 740 | 100 | Plus |
2L | 23513712 | 2L | 8029606..8029734 | 15..143 | 645 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 20:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 1624..1683 | 240..299 | 120 | 66.7 | Plus |
BS11092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:35 Download gff for
BS11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7380-PA | 1..273 | 17..289 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:49 Download gff for
BS11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7380-PA | 1..273 | 17..289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:53:15 Download gff for
BS11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 142..422 | 9..292 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:06 Download gff for
BS11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 142..422 | 9..292 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:06 Download gff for
BS11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8029603..8029733 | 9..142 | 97 | -> | Plus |
2L | 8029816..8029965 | 143..292 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:53:15 Download gff for
BS11092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8029603..8029733 | 9..142 | 97 | -> | Plus |
arm_2L | 8029816..8029965 | 143..292 | 99 | | Plus |
BS11092.complete Sequence
305 bp assembled on 2007-10-29
GenBank Submission: FJ636769
> BS11092.complete
GAAGTTATCAGTCGACATGTCGGGCACATCGCAGAAACACAGGAACTTCG
TTGCGGAGCCAATGGGCAACAAGTCGGTGACGGAACTGGCCGGAATTGGG
GAAACCCTCGGTGGACGCTTGAAGGACGCTGGATTCGATATGGCCTACAC
CGTTTTGGGACAGTATCTGGTGCTGAAAAAGGACGAGGAGCTGTTCAAGG
ACTGGATGAAGGAGGTGTGCCACGCCAGCTCCAAACAGGCATCCGATTGC
TACAACTGTCTCAACGATTGGTGCGAGGAGTTCTTGTAAAAGCTTTCTAG
ACCAT
BS11092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baf-RB | 273 | CG7380-PB | 1..273 | 17..289 | 1365 | 100 | Plus |
baf-RA | 273 | CG7380-PA | 1..273 | 17..289 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baf-RB | 1022 | CG7380-RB | 145..419 | 15..289 | 1375 | 100 | Plus |
baf-RA | 607 | CG7380-RA | 145..419 | 15..289 | 1375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8029815..8029962 | 142..289 | 740 | 100 | Plus |
2L | 23513712 | 2L | 8029606..8029734 | 15..143 | 645 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 1624..1683 | 240..299 | 120 | 66.7 | Plus |
BS11092.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:45 Download gff for
BS11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 1..273 | 17..289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:31 Download gff for
BS11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 140..420 | 9..292 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:54 Download gff for
BS11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 147..417 | 17..287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:20 Download gff for
BS11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 145..415 | 17..287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:38 Download gff for
BS11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 147..417 | 17..287 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:38 Download gff for
BS11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8029608..8029733 | 17..142 | 100 | -> | Plus |
2L | 8029816..8029960 | 143..287 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:54 Download gff for
BS11092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8029608..8029733 | 17..142 | 100 | -> | Plus |
arm_2L | 8029816..8029960 | 143..287 | 100 | | Plus |
BS11092.pep Sequence
Translation from 16 to 288
> BS11092.pep
MSGTSQKHRNFVAEPMGNKSVTELAGIGETLGGRLKDAGFDMAYTVLGQY
LVLKKDEELFKDWMKEVCHASSKQASDCYNCLNDWCEEFL*
BS11092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baf-PB | 90 | CG7380-PB | 1..90 | 1..90 | 487 | 100 | Plus |
baf-PA | 90 | CG7380-PA | 1..90 | 1..90 | 487 | 100 | Plus |