Clone BS11093 Report

Search the DGRC for BS11093

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG12481-RB
Protein status:BS11093.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11093.3prime Sequence

393 bp (392 high quality bases) assembled on 2006-04-19

> BS11093.3prime
ATGGTCTAGAAAGCTTTCACTTCCGCTGTCTGGACTTTTGGGCCAGATCC
TTGGCGTAGGCCACGAACAGGATGTTGTGCTTGCTGGCCACCGGTTTCCC
GTCATCCTGATCGTATCGCACCTGCAGGGTATCCGAGTCCAGGGTAATAC
TGCCCACCGGCTGACCCGGTTTGATGTAATAGTTCTGGCCCAACGAAGTG
GGTCTATGCTCGGTGACGAAGTGATAACGCATCGGTTCCATCTCCTCAAT
GACCAGCTTGGGTCTGCTTGTGGTCACATTGATGAGCATCGGTTCCATTT
CCGTCTGGCTCACCGGTTGGGCGCCAGTTGAAGCTAACAGCGCCATTGCA
ACGATGACAACACTTGATTTGGTCCACATGTCGACTGATAACT

BS11093.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-PB 363 CG12481-RB 1..363 379..17 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-RB 589 CG12481-RB 26..391 380..15 1830 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14187278..14187643 380..15 1830 100 Minus
Blast to na_te.dros performed on 2015-02-06 18:32:41 has no hits.

BS11093.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:36 Download gff for BS11093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-PB 1..363 17..379 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:51 Download gff for BS11093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-PB 1..363 17..379 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:40:26 Download gff for BS11093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 18..391 15..393 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:44:51 Download gff for BS11093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 18..391 15..393 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:44:51 Download gff for BS11093.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14187270..14187643 15..393 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:40:26 Download gff for BS11093.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14081303..14081676 15..393 98   Minus

BS11093.5prime Sequence

393 bp (392 high quality bases) assembled on 2006-04-19

> BS11093.5prime
GAAGTTATCAGTCGACATGTGGACCAAATCAAGTGTTGTCATCGTTGCAA
TGGCGCTGTTAGCTTCAACTGGCGCCCAACCGGTGAGCCAGACGGAAATG
GAACCGATGCTCATCAATGTGACCACAAGCAGACCCAAGCTGGTCATTGA
GGAGATGGAACCGATGCGTTATCACTTCGTCACCGAGCATAGACCCACTT
CGTTGGGCCAGAACTATTACATCAAACCGGGTCAGCCGGTGGGCAGTATT
ACCCTGGACTCGGATACCCTGCAGGTGCGATACGATCAGGATGACGGGAA
ACCGGTGGCCAGCAAGCACAACATCCTGTTCGTGGCCTACGCCAAGGATC
TGGCCCAAAAGTCCAGACAGCGGAAGTGAAAGCTTTCTAGACC

BS11093.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-PB 363 CG12481-RB 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-RB 589 CG12481-RB 26..391 16..381 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14187278..14187643 16..381 1830 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:54:42 has no hits.

BS11093.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:37 Download gff for BS11093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-PB 1..363 17..379 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:25:52 Download gff for BS11093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-PB 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:39:40 Download gff for BS11093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 19..391 5..381 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:46 Download gff for BS11093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 19..391 5..381 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:46 Download gff for BS11093.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14187271..14187643 5..381 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:39:40 Download gff for BS11093.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14081304..14081676 5..381 98   Plus

BS11093.complete Sequence

395 bp assembled on 2006-11-01

GenBank Submission: FJ636770

> BS11093.complete
GAAGTTATCAGTCGACATGTGGACCAAATCAAGTGTTGTCATCGTTGCAA
TGGCGCTGTTAGCTTCAACTGGCGCCCAACCGGTGAGCCAGACGGAAATG
GAACCGATGCTCATCAATGTGACCACAAGCAGACCCAAGCTGGTCATTGA
GGAGATGGAACCGATGCGTTATCACTTCGTCACCGAGCATAGACCCACTT
CGTTGGGCCAGAACTATTACATCAAACCGGGTCAGCCGGTGGGCAGTATT
ACCCTGGACTCGGATACCCTGCAGGTGCGATACGATCAGGATGACGGGAA
ACCGGTGGCCAGCAAGCACAACATCCTGTTCGTGGCCTACGCCAAGGATC
TGGCCCAAAAGTCCAGACAGCGGAAGTGAAAGCTTTCTAGACCAT

BS11093.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-RB 363 CG12481-PB 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-RB 589 CG12481-RB 26..391 16..381 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14187278..14187643 16..381 1830 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:48:58 has no hits.

BS11093.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:32 Download gff for BS11093.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:54 Download gff for BS11093.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 19..391 5..381 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:10 Download gff for BS11093.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 27..388 17..378 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:32 Download gff for BS11093.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 19..391 5..381 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:04 Download gff for BS11093.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 27..388 17..378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:04 Download gff for BS11093.complete
Subject Subject Range Query Range Percent Splice Strand
X 14187279..14187640 17..378 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:10 Download gff for BS11093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14081312..14081673 17..378 100   Plus

BS11093.pep Sequence

Translation from 16 to 378

> BS11093.pep
MWTKSSVVIVAMALLASTGAQPVSQTEMEPMLINVTTSRPKLVIEEMEPM
RYHFVTEHRPTSLGQNYYIKPGQPVGSITLDSDTLQVRYDQDDGKPVASK
HNILFVAYAKDLAQKSRQRK*

BS11093.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-PB 120 CG12481-PB 1..120 1..120 613 100 Plus