Clone Sequence Records
BS11101.complete Sequence
4406 bp assembled on 2009-12-07
GenBank Submission: KX803763
> BS11101.complete
GAAGTTATCAGTCGACATGCAGCAGCAGCAACAACCGTCCATCGACCAGC
TGCCCGAGCCCACAGCTTCGACCAGCAATTCGGCCACAACTAAACCGACA
ATTGCAACAGCAACCACATCGACAACAACAACGTCTGGCAACAACTTCCA
CCAGCAACTGCAAGCAACAACGGCAGCCACCATGCAACGCCTGCGAACAA
CCTTTACGCGATCACGCACTCCAACAGGTGCCGAAATGAAGATGCAGAAT
AGCCTGGAGGTGCCCAAGCAGGTGCGCTCCGCCTCTTTCGACGAGATGCA
ACTGGAGTCGCAGCGTGCCTCCTCCAGTCTGCTCAAGCAGCAATCCTCAT
CATCGGCCTCGGCAGACGAACGCTCCTCGGAGGCTGGCTTCCTGCAGGTT
CCATTGGCGGCCCATCAGCAAAGATCCCATAGCTTCGATTCGGCAACTGC
CTCGGCGGGCAGCGATGACTCGGGCACCTTTTTGGAGGTGCCACGACGGC
TGAAGGCTCGACGCAGTTCGTCAACCAAGACACCGCCGCCTTGCATCCAT
TGTCACTATCTGGAGGAGTATGAGCGTCGTATGACCGCCGAACAGCGTTA
CTTCATCGATCATCGCGAGTTAACGGCTTTGAGCTACAGCAATACCAGCT
CGGAGGCGAGTGAGGATGAGGATGAAGTTGAGGGCCATAACGCGGAGGAA
GAGGAGGAGGGCAGTGCGGCCATCGAGGATGCCGAGGAGGAGACCACGGA
GGCAGCTACCGAAGAAGCGGATGAAGATCCCCGCACCGAGGTTGAGTCCG
AGCATGATCACGATCCGGATGACGATGCCGCATTGGAGATGGATATTCGC
ATTGGCAACATGAGCCAAGGCAGCAGCATCGAGGAGTCGCGCGCCCGCCT
ACCGCGACAAATGCGGCGTCACACCATCGGTAGCAGCTCGGTCACCTCGG
CCTCCGAGGATGAGGGCTTGGAGGGCTCGGACAATGGTTCGCCGCATTTT
GGCAACACCTTGTTGCCACCACAGCCGACAACACCATGTGGCATAACCTT
CACGCTAAGTCCAACCAATGGGGATTATCCTTCGCCGCCGCATCTGCCCT
TAGATCCCGGCTCGCCGCCCATTTCGCCCTGCTCCTCCAATTCGGGTAGA
TTGCCAGCTCTGGCCCCGATCATTTCCACGCCCTGCTCCTCGGCGGATGC
CGATGATGCTGGTGCCGCTATGGGTTTGCCAGTCCGAGCAAGACGTCGTT
CGATTTCGCGACAGGAAGCGATATTCGTGGAGCCCACTGGTAACTCACTG
GAGAACGTTTCGCACGAGGAGGTGGACAACAGCAATACCAAGTCATCGGT
GGACACGGCTGATTCACTGGACGAGGCCTCGACCATGGCCACGTGTGGCT
CACCCGGAGCCGCCGGTGGCAGTGGTGCCTCCTCCAGTCATCATAACGCC
TTTGTTGTGCGAGATATTTACCTAATGGTACCGGATTTGAAGCGAGATCG
CGCCGCCTCCGTGGATTCGTGCTTCTCCAAGCTCTCGTCGAATGCCAAAA
CGGAGGAGCTGCAACCAAGTGCCGATGGTTGCTTCCTTACCGTACCGAAT
ATAAATGCAACTCGATCGCGATCCGTGGACATCGTGCTACCAACTGACGA
GCAAGCCAGATATAAGGCTTTATCCATGACCGGATCCACTGTCACCTATG
CAGACGGGCGTACCGCTTCGGCCAGCAACTCCCGTAGACCGATACGGATT
GTGCCCGATTGGACGGAGAATGCCGTGCAGGGCGAGCACTATTGGAAGCC
CACCTCCGCCTCCGGCGATCTCTGCTGCCTGAATGAGGAGTGCATTAAAA
GCGGCCAGCGGATGAAGTGCTCCGCCTGCCAACTGGTTGCCCACCACAAC
TGCATACCGTTCGTCAACGAGAAGAGCACCCTGGCCTGTAAGCCCACCTA
TCGGGATGTGGGCATACGGCAGTACCGTGAGCAGACCACCACCCATCATC
ATTGGGTGCATCGCAAGTTGGAGAAGGGCAAGTGCAAGCAGTGCGGCAAG
TTCTTTCCTATGAAGCAGGCGGTGCAAAGCAAGCTATTTGGGTCGAAGGA
GATTGTGGCGTTGGCCTGTGCGTGGTGCCACGAGATTTACCACAACAAGG
AGGCCTGTTTTAACCAGGCCAAAATCGGCGAGGAATGTCGTCTGGGCAAC
TATGCGCCCATCATTGTGCCGCCATCGTGGATTGTGAAGCTGCCAACCAA
GGGCAACTTCAAGTCCTCGATACGCGTGAGCAATAAGAACAATGCCGCAT
CGGGATCAGGAGGTGGTGGTGCTGGTGGCGGTGCCGGTGGCGGTGGTGGC
AAGAGCAAGAAGCAAACGCAGCGGCGACAGAAGGGCAAGGAGGAGAAGAA
GGAGCCGCGAGCGTTCATTGTGAAGCCCATTCCATCGCCGGAGGTAATCC
CGGTCATTGTGTTTATTAATCCCAAATCGGGCGGCAATCAGGGCCACAAG
CTGTTGGGAAAATTCCAGCATCTGCTCAATCCGCGCCAGGTTTTCGATCT
TACGCAAGGCGGTCCCAAAATGGGCCTGGACATGTTCCGCAAGGCGCCCA
ATCTGCGGGTGCTGGCTTGCGGTGGCGACGGCACCGTCGGCTGGGTCCTT
TCCGTCCTGGATCAAATCCAACCGCCGCTCCAGCCAGCTCCGGCGGTTGG
TGTCCTGCCCCTGGGCACTGGCAACGATCTCGCTCGCGCTCTCGGATGGG
GAGGGGGCTACACGGACGAACCGATCGGGAAGATACTGCGCGAGATCGGG
ATGTCCCAGTGCGTGCTAATGGATCGCTGGCGGGTTAAGGTCACGCCCAA
CGATGACGTCACCGATGACCATGTCGATCGCAGCAAGCCCAATGTCCCAT
TGAATGTCATCAACAACTATTTCTCCTTCGGCGTGGACGCGCACATCGCT
TTGGAATTCCATGAGGCACGTGAGGCTCATCCGGAGCGCTTCAATTCGCG
CCTGCGCAACAAGATGTACTACGGCCAGATGGGCGGCAAGGATTTGATTC
TGCGCCAATACCGCAACCTCTCGCAATGGGTGACGCTCGAGTGTGATGGT
CAGGACTTTACCGGAAAATTACGCGATGCCGGCTGCCATGCCGTGCTCTT
CCTAAACATTCCCAGCTATGGCGGTGGCACCCATCCATGGAACGACTCCT
TTGGCGCCTCCAAGCCATCGATTGATGACGGACTAATGGAGGTTGTTGGC
CTGACCACCTACCAGCTGCCCATGCTGCAGGCTGGCATGCATGGCACGTG
CATTTGCCAGTGCCGCAAGGCCAGGATCATCACCAAACGCACCATTCCGA
TGCAGGTGGATGGTGAGGCATGTCGCGTCAAGCCATCGGTGATCGAGATC
GAGCTGCTCAACAAGGCACTGATGCTGTCGAAAAGGAAGCACGGACGCGG
CGATGTTCAAGTGAATCCCCTGGAGAAGATGCAGTTGCACATTTTGCGCG
TGACCATGCAACAGTACGAGCAGTACCACTATGACAAGGAGATGCTACGC
AAATTGGCCAATAAGTTGGGTCAAATCGAAATCGAATCTCAGTGCGATTT
GGAGCATGTGCGCAATATGCTCAACACCAAGTTCGAGGAATCCATCTCCT
ATCCAAAGGTCTCACAGGATTGGTGCTTCATCGACTCCTGCACCGCTGAG
CACTACTTCCGGATCGATCGTGCCCAGGAGCATCTGCACTATATCTGCGA
CATTGCCATCGATGAACTGTATATCCTGGACCACGAGGCGGCCACCATGC
CGCAGACACCCGATCAGGAGCGCTCCTTTGCAGCCTTCTCGCAGCGGCAG
GCACAGAACGAGCGACGCCAAATGGATCAGGCCCAGGGTCGCGGCCCGGG
CAGCACCGATGAGGATTTGCAAATTGGCTCCAAGCCCATAAAAGTGATGA
AGTGGAAGAGCCCTATACTGGAGCAAACTTCCGATGCCATACTACTAGCA
GCCCAGAGCGGCGATCTCAATATGTTACGTGCACTACATGAACAAGGATA
CTCACTGCAGTCAGTGAACAAAAACGGACAGACGGCGCTGCATTTCGCCT
GCAAATACAACCACAGGGACATTGTCAAATATATCATCGCAAGCGCCACA
CGACGCCTCATCAACATGGCCGACAAGGAGCTTGGACAGACGGCGCTTCA
CATTGCCGCCGAGCAGAATCGCCGCGACATCTGCGTGATGCTGGTTGCCG
CCGGCGCCCATTTGGATACCCTAGACTCCGGCGGAAATACGCCCATGATG
GTGGCCTTCAACAAGAACGCCAACGAGATAGCCACCTATTTGGAAAGTAA
GCAGGGGACTCAGCCCGTCGACGGCTGGCTCGACGACTAGAAGCTTTCTA
GACCAT
BS11101.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgA-RA | 4374 | CG42667-PA | 1..4374 | 17..4390 | 21870 | 100 | Plus |
| rdgA-RI | 4383 | CG42667-PI | 1..4383 | 17..4390 | 21745 | 99.8 | Plus |
| rdgA-RH | 4389 | CG42667-PH | 1..4389 | 17..4390 | 21685 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgA-RA | 5598 | CG34344-RA | 1116..5494 | 13..4391 | 21880 | 100 | Plus |
| rdgA-RI | 10147 | CG42667-RI | 1116..5503 | 13..4391 | 21755 | 99.8 | Plus |
| rdgA-RH | 8292 | CG42667-RH | 1116..5509 | 13..4391 | 21695 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9000678..9002118 | 268..1708 | 7205 | 100 | Plus |
| X | 23542271 | X | 9020881..9021291 | 2755..3165 | 2055 | 100 | Plus |
| X | 23542271 | X | 9019404..9019783 | 2195..2574 | 1900 | 100 | Plus |
| X | 23542271 | X | 9021356..9021652 | 3163..3459 | 1485 | 100 | Plus |
| X | 23542271 | X | 8999982..9000242 | 13..273 | 1290 | 99.6 | Plus |
| X | 23542271 | X | 9021726..9021952 | 3460..3686 | 1135 | 100 | Plus |
| X | 23542271 | X | 9022018..9022239 | 3687..3908 | 1110 | 100 | Plus |
| X | 23542271 | X | 9024624..9024832 | 4183..4391 | 1045 | 100 | Plus |
| X | 23542271 | X | 9016125..9016328 | 1847..2050 | 1020 | 100 | Plus |
| X | 23542271 | X | 9019850..9020032 | 2574..2756 | 915 | 100 | Plus |
| X | 23542271 | X | 9024260..9024418 | 4024..4182 | 795 | 100 | Plus |
| X | 23542271 | X | 9017842..9017989 | 2049..2196 | 740 | 100 | Plus |
| X | 23542271 | X | 9014828..9014967 | 1707..1846 | 700 | 100 | Plus |
| X | 23542271 | X | 9024072..9024137 | 3959..4024 | 330 | 100 | Plus |
| X | 23542271 | X | 9023274..9023326 | 3908..3960 | 265 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2534 | 19..227 | 222 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6939 | 41..270 | 204 | 61.9 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2590..2687 | 46..147 | 150 | 62.7 | Plus |
BS11101.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:38 Download gff for
BS11101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgA-RA | 1120..5493 | 17..4390 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:09 Download gff for
BS11101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgA-RA | 1120..5493 | 17..4390 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:02 Download gff for
BS11101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgA-RA | 1120..5493 | 17..4390 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:44 Download gff for
BS11101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgA-RA | 1120..5493 | 17..4390 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:44 Download gff for
BS11101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9017844..9017988 | 2051..2195 | 100 | -> | Plus |
| X | 8999986..9000240 | 17..271 | 100 | -> | Plus |
| X | 9000682..9002117 | 272..1707 | 100 | -> | Plus |
| X | 9014829..9014967 | 1708..1846 | 100 | -> | Plus |
| X | 9016125..9016328 | 1847..2050 | 100 | -> | Plus |
| X | 9019405..9019783 | 2196..2574 | 100 | -> | Plus |
| X | 9019851..9020031 | 2575..2755 | 100 | -> | Plus |
| X | 9020882..9021291 | 2756..3165 | 100 | -> | Plus |
| X | 9021359..9021652 | 3166..3459 | 100 | -> | Plus |
| X | 9021726..9021952 | 3460..3686 | 100 | -> | Plus |
| X | 9022018..9022239 | 3687..3908 | 100 | -> | Plus |
| X | 9023275..9023326 | 3909..3960 | 100 | -> | Plus |
| X | 9024074..9024137 | 3961..4024 | 100 | -> | Plus |
| X | 9024261..9024418 | 4025..4182 | 100 | -> | Plus |
| X | 9024624..9024831 | 4183..4390 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:09 Download gff for
BS11101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8894019..8894273 | 17..271 | 100 | -> | Plus |
| arm_X | 8894715..8896150 | 272..1707 | 100 | -> | Plus |
| arm_X | 8908862..8909000 | 1708..1846 | 100 | -> | Plus |
| arm_X | 8910158..8910361 | 1847..2050 | 100 | -> | Plus |
| arm_X | 8911877..8912021 | 2051..2195 | 100 | -> | Plus |
| arm_X | 8913438..8913816 | 2196..2574 | 100 | -> | Plus |
| arm_X | 8913884..8914064 | 2575..2755 | 100 | -> | Plus |
| arm_X | 8914915..8915324 | 2756..3165 | 100 | -> | Plus |
| arm_X | 8915392..8915685 | 3166..3459 | 100 | -> | Plus |
| arm_X | 8915759..8915985 | 3460..3686 | 100 | -> | Plus |
| arm_X | 8916051..8916272 | 3687..3908 | 100 | -> | Plus |
| arm_X | 8917308..8917359 | 3909..3960 | 100 | -> | Plus |
| arm_X | 8918107..8918170 | 3961..4024 | 100 | -> | Plus |
| arm_X | 8918294..8918451 | 4025..4182 | 100 | -> | Plus |
| arm_X | 8918657..8918864 | 4183..4390 | 100 | | Plus |
BS11101.3prime Sequence
906 bp (866 high quality bases) assembled on 2006-04-19
> BS11101.3prime
ATGGTCTAGAAAGCTTCTAGTCGTCGAGCCAGCCGTCGACGGGCTGAGTC
CCCTGCTTACTTTCCAAATAGGTGGCTATCTCGTTGGCGTTCTTGTTGAA
GGCCACCATCATGGGCGTATTTCCGCCGGAGTCTAGGGTATCCAAATGGG
CGCCGGCGGCAACCAGCATCACGCAGATGTCGCGGCGATTCTGCTCGGCG
GCAATGTGAAGCGCCGTCTGTCCAAGCTCCTTGTCGGCCATGTTGATGAG
GCGTCGTGTGGCGCTTGCGATGATATATTTGACAATGTCCCTGTGGTTGT
ATTTGCAGGCGAAATGCAGCGCCGTCTGTCCGTTTTTGTTCACTGACTGC
AGTGAGTATCCTTGTTCATGTAGTGCACGTAACATATTGAGATCGCCGCT
CTGGGCTGCTAGTAGTATGGCATCGGAAGTTTGCTCCAGTATAGGGCTCT
TCCACTTCATCACTTTTATGGGCTTGGAGCCAATTTGCAAATCCTCATCG
GTGCTGCCCGGGCCGCGACCCTGGGCCTGATCCATTTGGCGTCGCTCGTT
CTGTGCCTGCCGCTGCGAGAAGGCTGCAAAGGAGCGCTCCTGATCGGGTG
TCTGCGGCATGGTGGCCGCCTCGTGGTCCAGGATATACAGTTCATCGATG
GCAATGTCGCAGATATAGTGCAGATGCTCCTGGGCACGATCGATCCGGAA
GTAGTGCTCAGCGGTGCAGGAGTCGATGAAGCACCAATCCTGTGAGACCT
TTGGATAGGAGATGGATTCCTCGAACTTGGTGTTGAGCATATTGCGCACA
TGCTCCAAATCGCACTGAGATTCGATTTCGATTTGACCCAACTTATTGGC
CAATTTGCGTAGCATCTCTTTGTCATAGTGGTACTGCTCGTACTGTTGCA
TGGTCA
BS11101.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10966-PA | 4374 | rdgA-RA | 3485..4374 | 906..17 | 4425 | 99.8 | Minus |
| CG10966-PB | 4428 | rdgA-RB | 3485..3945 | 906..446 | 2280 | 99.7 | Minus |
| CG10966-PB | 4428 | rdgA-RB | 3997..4386 | 448..59 | 1950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgA-RI | 10147 | CG42667-RI | 4613..5503 | 906..16 | 4440 | 99.9 | Minus |
| rdgA-RH | 8292 | CG42667-RH | 4619..5509 | 906..16 | 4440 | 99.9 | Minus |
| rdgA-RG | 5583 | CG42667-RG | 4589..5479 | 906..16 | 4440 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9022018..9022239 | 720..499 | 1110 | 100 | Minus |
| X | 23542271 | X | 9024624..9024832 | 224..16 | 1045 | 100 | Minus |
| X | 23542271 | X | 9021767..9021952 | 906..721 | 915 | 99.5 | Minus |
| X | 23542271 | X | 9024260..9024418 | 383..225 | 795 | 100 | Minus |
| X | 23542271 | X | 9024072..9024137 | 448..383 | 330 | 100 | Minus |
| X | 23542271 | X | 9023274..9023326 | 499..447 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 20:00:43 has no hits.
BS11101.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:42 Download gff for
BS11101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgA-PA | 3486..4374 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:26:00 Download gff for
BS11101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10966-PA | 3486..4374 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:35:07 Download gff for
BS11101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgA-RG | 4590..5479 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:47:53 Download gff for
BS11101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgA-RG | 4590..5479 | 16..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:47:53 Download gff for
BS11101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9022018..9022239 | 499..720 | 100 | -> | Minus |
| X | 9023275..9023326 | 447..498 | 100 | -> | Minus |
| X | 9021768..9021952 | 721..905 | 99 | -> | Minus |
| X | 9024074..9024137 | 383..446 | 100 | -> | Minus |
| X | 9024624..9024832 | 16..224 | 100 | | Minus |
| X | 9024261..9024418 | 225..382 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:35:07 Download gff for
BS11101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8915801..8915985 | 721..905 | 99 | -> | Minus |
| arm_X | 8916051..8916272 | 499..720 | 100 | -> | Minus |
| arm_X | 8917308..8917359 | 447..498 | 100 | -> | Minus |
| arm_X | 8918107..8918170 | 383..446 | 100 | -> | Minus |
| arm_X | 8918294..8918451 | 225..382 | 100 | -> | Minus |
| arm_X | 8918657..8918865 | 16..224 | 100 | | Minus |
BS11101.5prime Sequence
940 bp (763 high quality bases) assembled on 2006-04-19
> BS11101.5prime
GAAGTTATCAGTCGACATGCAGCAGCAGCAACAACCGTCCATCGACCAGC
TGCCCGAGCCCACAGCTTCGACCAGCAATTCGGCCACAACTAAACCGACA
ATTGCAACAGCAACCACATCGACAACAACAACGTCTGGCAACAACTTCCA
CCAGCAACTGCAAGCAACAACGGCAGCCACCATGCAACGCCTGCGAACAA
CCTTTACGCGATCACGCACTCCAACAGGTGCCGAAATGAAGATGCAGAAT
AGCCTGGAGGTGCCCAAGCAGGTGCGCTCCGCCTCTTTCGACGAGATGCA
ACTGGAGTCGCAGCGTGCCTCCTCCAGTCTGCTCAAGCAGCAATCCTCAT
CATCGGCCTCGGCAGACGAACGCTCCTCGGAGGCTGGCTTCCTGCAGGTT
CCATTGGCGGCCCATCAGCAAAGATCCCATAGCTTCGATTCGGCAACTGC
CTCGGCGGGCAGCGATGACTCGGGCACCTTTTTGGAGGTGCCACGACGGC
TGAAGGCTCGACGCAGTTCGTCAACCAAGACACCGCCGCCTTGCATCCAT
TGTCACTATCTGGAGGAGTATGAGCGTCGTATGACCGCCGAACAGCGTTA
CTTCATCGATCATCGCGAGTTAACGGCTTTGAGCTACAGCAATACCAGCT
CGGAGGCGAGTGAGGATGAGGATGAAGTTGAGGGCCATAACGCGGAGGAA
GAGGAGGAGGGCAGTGCGGCCATCGAGGATGCCGAGGAGGAGACCACGGA
GGCAGCTACCGAAGAAGCGGATGAAGATCCCCGCACCGAGGTTGAGTCCG
AGCATGATCACGATCCGGATGACGATGCCGCATTGGAGATGGATATTCGC
ATTGGCAACATGAGCCAAGGCAGCAGCATCGAGGAGTCGCGCGCCCCGCT
ACCGCGACAAATGCGGCGTCACACCATCGGTAGCAGCTCG
BS11101.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10966-PA | 4374 | rdgA-RA | 1..924 | 17..940 | 4570 | 99.7 | Plus |
| CG10966-PB | 4428 | rdgA-RB | 1..924 | 17..940 | 4570 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgA-RH | 8292 | CG42667-RH | 1116..2043 | 13..940 | 4595 | 99.7 | Plus |
| rdgA-RK | 5561 | CG42667-RK | 1116..2043 | 13..940 | 4595 | 99.7 | Plus |
| rdgA-RJ | 5497 | CG42667-RJ | 1116..2043 | 13..940 | 4595 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9000678..9001350 | 268..940 | 3335 | 99.7 | Plus |
| X | 23542271 | X | 8999982..9000242 | 13..273 | 1290 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-12 00:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2534 | 19..227 | 222 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6939 | 41..270 | 204 | 61.9 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2590..2687 | 46..147 | 150 | 62.7 | Plus |
BS11101.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:58:43 Download gff for
BS11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgA-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:26:01 Download gff for
BS11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10966-PB | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:15:33 Download gff for
BS11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgA-RA | 1116..2043 | 13..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:01 Download gff for
BS11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgA-RJ | 1116..2043 | 13..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:01 Download gff for
BS11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8999982..9000240 | 13..271 | 99 | -> | Plus |
| X | 9000682..9001350 | 272..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:15:33 Download gff for
BS11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8894015..8894273 | 13..271 | 99 | -> | Plus |
| arm_X | 8894715..8895383 | 272..940 | 99 | | Plus |
BS11101.pep Sequence
Translation from 16 to 4389
> BS11101.pep
MQQQQQPSIDQLPEPTASTSNSATTKPTIATATTSTTTTSGNNFHQQLQA
TTAATMQRLRTTFTRSRTPTGAEMKMQNSLEVPKQVRSASFDEMQLESQR
ASSSLLKQQSSSSASADERSSEAGFLQVPLAAHQQRSHSFDSATASAGSD
DSGTFLEVPRRLKARRSSSTKTPPPCIHCHYLEEYERRMTAEQRYFIDHR
ELTALSYSNTSSEASEDEDEVEGHNAEEEEEGSAAIEDAEEETTEAATEE
ADEDPRTEVESEHDHDPDDDAALEMDIRIGNMSQGSSIEESRARLPRQMR
RHTIGSSSVTSASEDEGLEGSDNGSPHFGNTLLPPQPTTPCGITFTLSPT
NGDYPSPPHLPLDPGSPPISPCSSNSGRLPALAPIISTPCSSADADDAGA
AMGLPVRARRRSISRQEAIFVEPTGNSLENVSHEEVDNSNTKSSVDTADS
LDEASTMATCGSPGAAGGSGASSSHHNAFVVRDIYLMVPDLKRDRAASVD
SCFSKLSSNAKTEELQPSADGCFLTVPNINATRSRSVDIVLPTDEQARYK
ALSMTGSTVTYADGRTASASNSRRPIRIVPDWTENAVQGEHYWKPTSASG
DLCCLNEECIKSGQRMKCSACQLVAHHNCIPFVNEKSTLACKPTYRDVGI
RQYREQTTTHHHWVHRKLEKGKCKQCGKFFPMKQAVQSKLFGSKEIVALA
CAWCHEIYHNKEACFNQAKIGEECRLGNYAPIIVPPSWIVKLPTKGNFKS
SIRVSNKNNAASGSGGGGAGGGAGGGGGKSKKQTQRRQKGKEEKKEPRAF
IVKPIPSPEVIPVIVFINPKSGGNQGHKLLGKFQHLLNPRQVFDLTQGGP
KMGLDMFRKAPNLRVLACGGDGTVGWVLSVLDQIQPPLQPAPAVGVLPLG
TGNDLARALGWGGGYTDEPIGKILREIGMSQCVLMDRWRVKVTPNDDVTD
DHVDRSKPNVPLNVINNYFSFGVDAHIALEFHEAREAHPERFNSRLRNKM
YYGQMGGKDLILRQYRNLSQWVTLECDGQDFTGKLRDAGCHAVLFLNIPS
YGGGTHPWNDSFGASKPSIDDGLMEVVGLTTYQLPMLQAGMHGTCICQCR
KARIITKRTIPMQVDGEACRVKPSVIEIELLNKALMLSKRKHGRGDVQVN
PLEKMQLHILRVTMQQYEQYHYDKEMLRKLANKLGQIEIESQCDLEHVRN
MLNTKFEESISYPKVSQDWCFIDSCTAEHYFRIDRAQEHLHYICDIAIDE
LYILDHEAATMPQTPDQERSFAAFSQRQAQNERRQMDQAQGRGPGSTDED
LQIGSKPIKVMKWKSPILEQTSDAILLAAQSGDLNMLRALHEQGYSLQSV
NKNGQTALHFACKYNHRDIVKYIIASATRRLINMADKELGQTALHIAAEQ
NRRDICVMLVAAGAHLDTLDSGGNTPMMVAFNKNANEIATYLESKQGTQP
VDGWLDD*
BS11101.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgA-PA | 1457 | CG34344-PA | 1..1457 | 1..1457 | 7659 | 100 | Plus |
| rdgA-PI | 1460 | CG42667-PI | 1..1460 | 1..1457 | 7645 | 99.8 | Plus |
| rdgA-PH | 1462 | CG42667-PH | 1..1462 | 1..1457 | 7643 | 99.7 | Plus |
| rdgA-PG | 1452 | CG42667-PG | 1..1452 | 1..1457 | 7596 | 99.5 | Plus |
| rdgA-PK | 1314 | CG42667-PK | 1..1302 | 1..1297 | 6820 | 99.6 | Plus |
