Clone Sequence Records
BS11130.5prime Sequence
888 bp (830 high quality bases) assembled on 2006-04-19
> BS11130.5prime
GAAGTTATCAGTCGACATGGCTCCGCGTCGCAACAGCAACATCAGCAGCA
GCGGCAACAGCACCCAGCAGCAGCACCAGCAACAGTTGCAGCAGCAGCAC
CAGACGCAGCAGCATCAACTGCTGCAGTTCTACGCGGAGAACGTGAATTC
TTCAGGCGTCCTAATGGCGCCCATGCAGGGAACCGGTGGCGTTGGCGGCG
TTGGCGGCGGGGGCATGGTCCACTGCTGCCTGCCCAGCGGAGACTGTCGC
AAACTGGACACCCTGATACACCTGAACGAGCTCTCCCTGGCGGACTGCAT
CCGTGTGCTGTGCAACAACGAGAACTGCAGCGCAGGCCAGTACATGCATC
GCGAGTGCTTCGAGTGGTGGGAGGCGAGCGTGCTGCAGGCACTGAAGGCC
AACGGTCGTGCTCGATCCTGGTCGGAGCGGCAGCGTCTGCAGCACCTGTG
GACCAAGAAGGGCTACGAGCTGGTCCAGAAGGCCTGCAGCTGCAAGTGCG
GCAGGGGACAATTGCGCAAGGACCTCGACTGGGTGCCGCCGAGCAGCCAG
GGCGTCATATACCTCAACGGGTCTGGCAACCGGCCCACTCTGGCCAATGG
CAGCCTCAGCGAGGACGACGACAAGAAGAAGGCCAAGAAGAAGAGGAACC
GCAACAACAACAACAACAACGGCGGCGGCGGTGGTGGTGGTGCTGGTGTC
AATGGCAACACCAAAACCCCCTTGAGCAACAACAACGGCAACAGCTACGC
CGGACTCACGCCCAATCCCAATGTGGGCGTCATAGGGTCGGGTTTGCCCC
ACAACAACGGCAACACCGCCAGCAATGGCAGCAGTGGCAACAACGGCTCC
TCCGGCGTTCTGCAGACCAGTGCGCTGGCCACTTTCAG
BS11130.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15532-PA | 1953 | hdc-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
CG15532-PC | 3243 | hdc-RC | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hdc-RD | 14807 | CG15532-RD | 1013..1884 | 17..888 | 4360 | 100 | Plus |
hdc-RC | 4518 | CG15532-RC | 1013..1884 | 17..888 | 4360 | 100 | Plus |
hdc-RA | 4518 | CG15532-RA | 1013..1884 | 17..888 | 4360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30278944..30279815 | 17..888 | 4360 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2535 | 620..856 | 172 | 54 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2487 | 641..748 | 153 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2508 | 647..847 | 151 | 55 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1169 | 626..751 | 143 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2928 | 706..847 | 127 | 59.4 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 504..552 | 700..748 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2989 | 601..842 | 116 | 54.9 | Plus |
BS11130.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:59:35 Download gff for
BS11130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hdc-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:27:08 Download gff for
BS11130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15532-PC | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:43:55 Download gff for
BS11130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hdc-RA | 1013..1884 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:10 Download gff for
BS11130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hdc-RA | 1013..1884 | 17..888 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:10 Download gff for
BS11130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30278944..30279815 | 17..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:43:55 Download gff for
BS11130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26104666..26105537 | 17..888 | 100 | | Plus |
BS11130.complete Sequence
1985 bp assembled on 2010-07-01
GenBank Submission: KX802562
> BS11130.complete
GAAGTTATCAGTCGACATGGCTCCGCGTCGCAACAGCAACATCAGCAGCA
GCGGCAACAGCACCCAGCAGCAGCACCAGCAACAGTTGCAGCAGCAGCAC
CAGACGCAGCAGCATCAACTGCTGCAGTTCTACGCGGAGAACGTGAATTC
TTCAGGCGTCCTAATGGCGCCCATGCAGGGAACCGGTGGCGTTGGCGGCG
TTGGCGGCGGGGGCATGGTCCACTGCTGCCTGCCCAGCGGAGACTGTCGC
AAACTGGACACCCTGATACACCTGAACGAGCTCTCCCTGGCGGACTGCAT
CCGTGTGCTGTGCAACAACGAGAACTGCAGCGCAGGCCAGTACATGCATC
GCGAGTGCTTCGAGTGGTGGGAGGCGAGCGTGCTGCAGGCACTGAAGGCC
AACGGTCGTGCTCGATCCTGGTCGGAGCGGCAGCGTCTGCAGCACCTGTG
GACCAAGAAGGGCTACGAGCTGGTCCAGAAGGCCTGCAGCTGCAAGTGCG
GCAGGGGACAATTGCGCAAGGACCTCGACTGGGTGCCGCCGAGCAGCCAG
GGCGTCATATACCTCAACGGGTCTGGCAACCGGCCCACTCTGGCCAATGG
CAGCCTCAGCGAGGACGACGACAAGAAGAAGGCCAAGAAGAAGAGGAACC
GCAACAACAACAACAACAACGGCGGCGGCGGTGGTGGTGGTGCTGGTGTC
AATGGCAACACCAAAACCCCCTTGAGCAACAACAACGGCAACAGCTACGC
CGGACTCACGCCCAATCCCAATGTGGGCGTCATAGGGTCGGGTTTGCCCC
ACAACAACGGCAACACCGCCAGCAATGGCAGCAGTGGCAACAACGGCTCC
TCCGGCGTTCTGCAGACCAGTGCGCTGGCCACTTTCAGCAACATCCTCAA
TACGAACAATGTCCTCGGCCTGGACCTGCGCGCCAGGGCTGGCAGCCTAT
CCTCCAGTGGAGCTGGCAGTGGATCCACCTCGCCCTCGGACTCCCAGTCC
AGTGGCGAGATATCCGTGTCGCCGGTGCAGCAATTGCTGCCACAGCAGCA
GCAGCAACAGCAGCAGTCGCTGCTGATCCAGCCTCTGGGTCCAGCTTTCG
GCAGCAACCTTTTGCAAAATGGATTGGGCTTGTCCAAGAATCTGCTGATT
GCTCCCCAGCAGCAGCAGCAGCAGCAGCTGCAACAACAACAGCAGCAGCA
GAATAACCTGCCTGCTTTGGCCAATATCAGCAACTTCAAGCCATTGGCCA
GCTACGAGCAGCAGCAACTTGTGCAGCAGCAGAAGAACAAGGAGGTCGAA
CTCTATTCCGATCGAGTGCGCTCCACATCTGGCTGCAATGGGATCTTTTC
GCGTCGCCTGGACTTTTCGTCGTTCAATTTGCTGCCAAAGACTCGTTTGA
ATTCTTATCAAGTCAAGATTGAGGACGAGGGCAACCACGGCAACGATGAG
ACGCGCCTGTTCATCCTCTCATCGCTGGCCCAATCCCAGATGAGCCGGGT
GGCCTGCATTCTGTGCGAGGAGCCGCTGCTCGTATTCGATCGCTATCCAC
TGGTTGATGGCTCCTTCTTTCTGAGTCCCAAGCAGCATTCCAGCGGCTGC
ATCGAGGTTAAATACGAGGGACGCACTCTCTACTTGACCTGTGTTTGCAT
GAGCTGCCTGGACGGAACCTCCAGCAGCCGGGCCATCAACTGCAGATTCT
GCAAGGAGCCGTGGGATGGCTCCAGCCTGGTTTTGGGCACCATGTACGCC
TACGACATCTTTGCGGCCATGCCCTGTTGCGCCGAGCGGTTCAAGTGCAA
TAACTGCTTCAAGATGCTAATGCATCCGCAGCAGCGTCTGAGCTTCTACA
GTGACTACTCGCACGGAGTGACCTGTCCGTATTGCAACACGCAGGACACG
CACTTCGTTAAGCCGCTGACCTTCTGCTACGCCAAGACCACGGCGACGCG
GCTGCCGACGCTCGCATAAAAGCTTTCTAGACCAT
BS11130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hdc-RD | 1953 | CG15532-PD | 1..1953 | 17..1969 | 9765 | 100 | Plus |
hdc-RC | 3243 | CG15532-PC | 1..1953 | 17..1969 | 9765 | 100 | Plus |
hdc-RA | 1953 | CG15532-PA | 1..1953 | 17..1969 | 9765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hdc-RD | 14807 | CG15532-RD | 1013..2965 | 17..1969 | 9765 | 100 | Plus |
hdc-RC | 4518 | CG15532-RC | 1013..2965 | 17..1969 | 9765 | 100 | Plus |
hdc-RA | 4518 | CG15532-RA | 1013..2965 | 17..1969 | 9765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30278944..30280247 | 17..1320 | 6520 | 100 | Plus |
3R | 32079331 | 3R | 30358248..30358440 | 1416..1608 | 965 | 100 | Plus |
3R | 32079331 | 3R | 30360365..30360540 | 1794..1969 | 880 | 100 | Plus |
3R | 32079331 | 3R | 30360137..30360241 | 1691..1795 | 525 | 100 | Plus |
3R | 32079331 | 3R | 30309151..30309248 | 1320..1417 | 490 | 100 | Plus |
3R | 32079331 | 3R | 30359971..30360061 | 1605..1695 | 455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6867 | 1157..1293 | 198 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2870 | 799..1282 | 182 | 54.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2981 | 620..1290 | 180 | 53.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2487 | 641..748 | 153 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2508 | 647..847 | 151 | 55 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1169 | 626..751 | 143 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..3005 | 706..925 | 136 | 55.2 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 504..552 | 700..748 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2989 | 601..842 | 116 | 54.9 | Plus |
BS11130.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 10:22:59 Download gff for
BS11130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hdc-RC | 1011..2961 | 17..1967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:10 Download gff for
BS11130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hdc-RA | 1013..2963 | 17..1967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:22 Download gff for
BS11130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hdc-RA | 1013..2963 | 17..1967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:22 Download gff for
BS11130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30358250..30358438 | 1418..1606 | 100 | -> | Plus |
3R | 30359973..30360061 | 1607..1695 | 100 | -> | Plus |
3R | 30360142..30360241 | 1696..1795 | 100 | -> | Plus |
3R | 30360367..30360538 | 1796..1967 | 100 | | Plus |
3R | 30309152..30309248 | 1321..1417 | 100 | -> | Plus |
3R | 30278944..30280247 | 17..1320 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:10 Download gff for
BS11130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26104666..26105969 | 17..1320 | 100 | -> | Plus |
arm_3R | 26134874..26134970 | 1321..1417 | 100 | -> | Plus |
arm_3R | 26183972..26184160 | 1418..1606 | 100 | -> | Plus |
arm_3R | 26185695..26185783 | 1607..1695 | 100 | -> | Plus |
arm_3R | 26185864..26185963 | 1696..1795 | 100 | -> | Plus |
arm_3R | 26186089..26186260 | 1796..1967 | 100 | | Plus |
BS11130.pep Sequence
Translation from 16 to 1968
> BS11130.pep
MAPRRNSNISSSGNSTQQQHQQQLQQQHQTQQHQLLQFYAENVNSSGVLM
APMQGTGGVGGVGGGGMVHCCLPSGDCRKLDTLIHLNELSLADCIRVLCN
NENCSAGQYMHRECFEWWEASVLQALKANGRARSWSERQRLQHLWTKKGY
ELVQKACSCKCGRGQLRKDLDWVPPSSQGVIYLNGSGNRPTLANGSLSED
DDKKKAKKKRNRNNNNNNGGGGGGGAGVNGNTKTPLSNNNGNSYAGLTPN
PNVGVIGSGLPHNNGNTASNGSSGNNGSSGVLQTSALATFSNILNTNNVL
GLDLRARAGSLSSSGAGSGSTSPSDSQSSGEISVSPVQQLLPQQQQQQQQ
SLLIQPLGPAFGSNLLQNGLGLSKNLLIAPQQQQQQQLQQQQQQQNNLPA
LANISNFKPLASYEQQQLVQQQKNKEVELYSDRVRSTSGCNGIFSRRLDF
SSFNLLPKTRLNSYQVKIEDEGNHGNDETRLFILSSLAQSQMSRVACILC
EEPLLVFDRYPLVDGSFFLSPKQHSSGCIEVKYEGRTLYLTCVCMSCLDG
TSSSRAINCRFCKEPWDGSSLVLGTMYAYDIFAAMPCCAERFKCNNCFKM
LMHPQQRLSFYSDYSHGVTCPYCNTQDTHFVKPLTFCYAKTTATRLPTLA
*
BS11130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hdc-PD | 650 | CG15532-PD | 1..650 | 1..650 | 3453 | 100 | Plus |
hdc-PC | 1080 | CG15532-PC | 1..650 | 1..650 | 3453 | 100 | Plus |
hdc-PA | 650 | CG15532-PA | 1..650 | 1..650 | 3453 | 100 | Plus |
hdc-PB | 201 | CG15532-PB | 17..201 | 466..650 | 1010 | 99.5 | Plus |