Clone BS11130 Report

Search the DGRC for BS11130

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:111
Well:30
Vector:pDNR-Dual
Associated Gene/Transcripthdc-RA
Protein status:BS11130.pep: full length peptide match
Sequenced Size:1985

Clone Sequence Records

BS11130.5prime Sequence

888 bp (830 high quality bases) assembled on 2006-04-19

> BS11130.5prime
GAAGTTATCAGTCGACATGGCTCCGCGTCGCAACAGCAACATCAGCAGCA
GCGGCAACAGCACCCAGCAGCAGCACCAGCAACAGTTGCAGCAGCAGCAC
CAGACGCAGCAGCATCAACTGCTGCAGTTCTACGCGGAGAACGTGAATTC
TTCAGGCGTCCTAATGGCGCCCATGCAGGGAACCGGTGGCGTTGGCGGCG
TTGGCGGCGGGGGCATGGTCCACTGCTGCCTGCCCAGCGGAGACTGTCGC
AAACTGGACACCCTGATACACCTGAACGAGCTCTCCCTGGCGGACTGCAT
CCGTGTGCTGTGCAACAACGAGAACTGCAGCGCAGGCCAGTACATGCATC
GCGAGTGCTTCGAGTGGTGGGAGGCGAGCGTGCTGCAGGCACTGAAGGCC
AACGGTCGTGCTCGATCCTGGTCGGAGCGGCAGCGTCTGCAGCACCTGTG
GACCAAGAAGGGCTACGAGCTGGTCCAGAAGGCCTGCAGCTGCAAGTGCG
GCAGGGGACAATTGCGCAAGGACCTCGACTGGGTGCCGCCGAGCAGCCAG
GGCGTCATATACCTCAACGGGTCTGGCAACCGGCCCACTCTGGCCAATGG
CAGCCTCAGCGAGGACGACGACAAGAAGAAGGCCAAGAAGAAGAGGAACC
GCAACAACAACAACAACAACGGCGGCGGCGGTGGTGGTGGTGCTGGTGTC
AATGGCAACACCAAAACCCCCTTGAGCAACAACAACGGCAACAGCTACGC
CGGACTCACGCCCAATCCCAATGTGGGCGTCATAGGGTCGGGTTTGCCCC
ACAACAACGGCAACACCGCCAGCAATGGCAGCAGTGGCAACAACGGCTCC
TCCGGCGTTCTGCAGACCAGTGCGCTGGCCACTTTCAG

BS11130.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15532-PA 1953 hdc-RA 1..872 17..888 4360 100 Plus
CG15532-PC 3243 hdc-RC 1..872 17..888 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
hdc-RD 14807 CG15532-RD 1013..1884 17..888 4360 100 Plus
hdc-RC 4518 CG15532-RC 1013..1884 17..888 4360 100 Plus
hdc-RA 4518 CG15532-RA 1013..1884 17..888 4360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30278944..30279815 17..888 4360 100 Plus
Blast to na_te.dros performed 2015-02-11 16:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2535 620..856 172 54 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2487 641..748 153 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2508 647..847 151 55 Plus
roo 9092 roo DM_ROO 9092bp 1048..1169 626..751 143 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2793..2928 706..847 127 59.4 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 504..552 700..748 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2989 601..842 116 54.9 Plus

BS11130.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:59:35 Download gff for BS11130.5prime
Subject Subject Range Query Range Percent Splice Strand
hdc-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:27:08 Download gff for BS11130.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15532-PC 1..872 17..888 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:43:55 Download gff for BS11130.5prime
Subject Subject Range Query Range Percent Splice Strand
hdc-RA 1013..1884 17..888 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:10 Download gff for BS11130.5prime
Subject Subject Range Query Range Percent Splice Strand
hdc-RA 1013..1884 17..888 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:10 Download gff for BS11130.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30278944..30279815 17..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:43:55 Download gff for BS11130.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26104666..26105537 17..888 100   Plus

BS11130.complete Sequence

1985 bp assembled on 2010-07-01

GenBank Submission: KX802562

> BS11130.complete
GAAGTTATCAGTCGACATGGCTCCGCGTCGCAACAGCAACATCAGCAGCA
GCGGCAACAGCACCCAGCAGCAGCACCAGCAACAGTTGCAGCAGCAGCAC
CAGACGCAGCAGCATCAACTGCTGCAGTTCTACGCGGAGAACGTGAATTC
TTCAGGCGTCCTAATGGCGCCCATGCAGGGAACCGGTGGCGTTGGCGGCG
TTGGCGGCGGGGGCATGGTCCACTGCTGCCTGCCCAGCGGAGACTGTCGC
AAACTGGACACCCTGATACACCTGAACGAGCTCTCCCTGGCGGACTGCAT
CCGTGTGCTGTGCAACAACGAGAACTGCAGCGCAGGCCAGTACATGCATC
GCGAGTGCTTCGAGTGGTGGGAGGCGAGCGTGCTGCAGGCACTGAAGGCC
AACGGTCGTGCTCGATCCTGGTCGGAGCGGCAGCGTCTGCAGCACCTGTG
GACCAAGAAGGGCTACGAGCTGGTCCAGAAGGCCTGCAGCTGCAAGTGCG
GCAGGGGACAATTGCGCAAGGACCTCGACTGGGTGCCGCCGAGCAGCCAG
GGCGTCATATACCTCAACGGGTCTGGCAACCGGCCCACTCTGGCCAATGG
CAGCCTCAGCGAGGACGACGACAAGAAGAAGGCCAAGAAGAAGAGGAACC
GCAACAACAACAACAACAACGGCGGCGGCGGTGGTGGTGGTGCTGGTGTC
AATGGCAACACCAAAACCCCCTTGAGCAACAACAACGGCAACAGCTACGC
CGGACTCACGCCCAATCCCAATGTGGGCGTCATAGGGTCGGGTTTGCCCC
ACAACAACGGCAACACCGCCAGCAATGGCAGCAGTGGCAACAACGGCTCC
TCCGGCGTTCTGCAGACCAGTGCGCTGGCCACTTTCAGCAACATCCTCAA
TACGAACAATGTCCTCGGCCTGGACCTGCGCGCCAGGGCTGGCAGCCTAT
CCTCCAGTGGAGCTGGCAGTGGATCCACCTCGCCCTCGGACTCCCAGTCC
AGTGGCGAGATATCCGTGTCGCCGGTGCAGCAATTGCTGCCACAGCAGCA
GCAGCAACAGCAGCAGTCGCTGCTGATCCAGCCTCTGGGTCCAGCTTTCG
GCAGCAACCTTTTGCAAAATGGATTGGGCTTGTCCAAGAATCTGCTGATT
GCTCCCCAGCAGCAGCAGCAGCAGCAGCTGCAACAACAACAGCAGCAGCA
GAATAACCTGCCTGCTTTGGCCAATATCAGCAACTTCAAGCCATTGGCCA
GCTACGAGCAGCAGCAACTTGTGCAGCAGCAGAAGAACAAGGAGGTCGAA
CTCTATTCCGATCGAGTGCGCTCCACATCTGGCTGCAATGGGATCTTTTC
GCGTCGCCTGGACTTTTCGTCGTTCAATTTGCTGCCAAAGACTCGTTTGA
ATTCTTATCAAGTCAAGATTGAGGACGAGGGCAACCACGGCAACGATGAG
ACGCGCCTGTTCATCCTCTCATCGCTGGCCCAATCCCAGATGAGCCGGGT
GGCCTGCATTCTGTGCGAGGAGCCGCTGCTCGTATTCGATCGCTATCCAC
TGGTTGATGGCTCCTTCTTTCTGAGTCCCAAGCAGCATTCCAGCGGCTGC
ATCGAGGTTAAATACGAGGGACGCACTCTCTACTTGACCTGTGTTTGCAT
GAGCTGCCTGGACGGAACCTCCAGCAGCCGGGCCATCAACTGCAGATTCT
GCAAGGAGCCGTGGGATGGCTCCAGCCTGGTTTTGGGCACCATGTACGCC
TACGACATCTTTGCGGCCATGCCCTGTTGCGCCGAGCGGTTCAAGTGCAA
TAACTGCTTCAAGATGCTAATGCATCCGCAGCAGCGTCTGAGCTTCTACA
GTGACTACTCGCACGGAGTGACCTGTCCGTATTGCAACACGCAGGACACG
CACTTCGTTAAGCCGCTGACCTTCTGCTACGCCAAGACCACGGCGACGCG
GCTGCCGACGCTCGCATAAAAGCTTTCTAGACCAT

BS11130.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
hdc-RD 1953 CG15532-PD 1..1953 17..1969 9765 100 Plus
hdc-RC 3243 CG15532-PC 1..1953 17..1969 9765 100 Plus
hdc-RA 1953 CG15532-PA 1..1953 17..1969 9765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
hdc-RD 14807 CG15532-RD 1013..2965 17..1969 9765 100 Plus
hdc-RC 4518 CG15532-RC 1013..2965 17..1969 9765 100 Plus
hdc-RA 4518 CG15532-RA 1013..2965 17..1969 9765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30278944..30280247 17..1320 6520 100 Plus
3R 32079331 3R 30358248..30358440 1416..1608 965 100 Plus
3R 32079331 3R 30360365..30360540 1794..1969 880 100 Plus
3R 32079331 3R 30360137..30360241 1691..1795 525 100 Plus
3R 32079331 3R 30309151..30309248 1320..1417 490 100 Plus
3R 32079331 3R 30359971..30360061 1605..1695 455 100 Plus
Blast to na_te.dros performed 2014-11-27 07:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6867 1157..1293 198 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2870 799..1282 182 54.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2981 620..1290 180 53.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2487 641..748 153 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2508 647..847 151 55 Plus
roo 9092 roo DM_ROO 9092bp 1048..1169 626..751 143 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2793..3005 706..925 136 55.2 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 504..552 700..748 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2989 601..842 116 54.9 Plus

BS11130.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 10:22:59 Download gff for BS11130.complete
Subject Subject Range Query Range Percent Splice Strand
hdc-RC 1011..2961 17..1967 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:10 Download gff for BS11130.complete
Subject Subject Range Query Range Percent Splice Strand
hdc-RA 1013..2963 17..1967 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:22 Download gff for BS11130.complete
Subject Subject Range Query Range Percent Splice Strand
hdc-RA 1013..2963 17..1967 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:22 Download gff for BS11130.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30358250..30358438 1418..1606 100 -> Plus
3R 30359973..30360061 1607..1695 100 -> Plus
3R 30360142..30360241 1696..1795 100 -> Plus
3R 30360367..30360538 1796..1967 100   Plus
3R 30309152..30309248 1321..1417 100 -> Plus
3R 30278944..30280247 17..1320 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:10 Download gff for BS11130.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26104666..26105969 17..1320 100 -> Plus
arm_3R 26134874..26134970 1321..1417 100 -> Plus
arm_3R 26183972..26184160 1418..1606 100 -> Plus
arm_3R 26185695..26185783 1607..1695 100 -> Plus
arm_3R 26185864..26185963 1696..1795 100 -> Plus
arm_3R 26186089..26186260 1796..1967 100   Plus

BS11130.pep Sequence

Translation from 16 to 1968

> BS11130.pep
MAPRRNSNISSSGNSTQQQHQQQLQQQHQTQQHQLLQFYAENVNSSGVLM
APMQGTGGVGGVGGGGMVHCCLPSGDCRKLDTLIHLNELSLADCIRVLCN
NENCSAGQYMHRECFEWWEASVLQALKANGRARSWSERQRLQHLWTKKGY
ELVQKACSCKCGRGQLRKDLDWVPPSSQGVIYLNGSGNRPTLANGSLSED
DDKKKAKKKRNRNNNNNNGGGGGGGAGVNGNTKTPLSNNNGNSYAGLTPN
PNVGVIGSGLPHNNGNTASNGSSGNNGSSGVLQTSALATFSNILNTNNVL
GLDLRARAGSLSSSGAGSGSTSPSDSQSSGEISVSPVQQLLPQQQQQQQQ
SLLIQPLGPAFGSNLLQNGLGLSKNLLIAPQQQQQQQLQQQQQQQNNLPA
LANISNFKPLASYEQQQLVQQQKNKEVELYSDRVRSTSGCNGIFSRRLDF
SSFNLLPKTRLNSYQVKIEDEGNHGNDETRLFILSSLAQSQMSRVACILC
EEPLLVFDRYPLVDGSFFLSPKQHSSGCIEVKYEGRTLYLTCVCMSCLDG
TSSSRAINCRFCKEPWDGSSLVLGTMYAYDIFAAMPCCAERFKCNNCFKM
LMHPQQRLSFYSDYSHGVTCPYCNTQDTHFVKPLTFCYAKTTATRLPTLA
*

BS11130.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
hdc-PD 650 CG15532-PD 1..650 1..650 3453 100 Plus
hdc-PC 1080 CG15532-PC 1..650 1..650 3453 100 Plus
hdc-PA 650 CG15532-PA 1..650 1..650 3453 100 Plus
hdc-PB 201 CG15532-PB 17..201 466..650 1010 99.5 Plus