Clone Sequence Records
BS11135.3prime Sequence
735 bp (672 high quality bases) assembled on 2006-04-19
> BS11135.3prime
ATGGTCTAGAAAGCTTCTAATTGTGGACTGGCATGGGCAGCTGGCCGAGC
AGATTGTTGGCGAACTGCGAGTTGGTGAACTTAAAGTGCCGCTTGTCGTA
GAACTTAAGCAGCGCCGGCGAGAACGGATGGTTGTTCTTCAGGTGCAGAT
AGTGGACCTCCGGCTCGCAGGTGGTGTGTCCGCACTCCTCGCACACGTAC
ATCTTGGCTCTGCGCTCCTTGTAGGCATACTGGTGCTGAACGCTATGCAC
CTTCTGGCAGTGCGACTCGAGGGAACAGCGCTGCGTGAAGCTCTTCTCGC
AGAGATTGCACTTGTACGGCCGGACGCCCGTGTGGGTGCGCGTGTGGCGC
TTGAGGTCGAAGGTGTCGTTGAATCCCTTGCCGCAGAACGTGCACAGATA
CCGCTTGATGTCCGAGTGACACTTCATGTGCCGATTGAGCAGGCGCTGCA
GCGAGAATGTCTTCATGCAGACGCGGCAGACGAACTTATTGTTGCCCGAC
GACGAATCCTCATTGGCTCCGCCGGATGAGCCCATGCAAAGGGCTTCGGC
GGATCCATGACTGCTGGCATTGCTGCTTGCACTGCTGTTACTGTGGTGCT
GATGGTGCTGCTGCTGCTGTTGCTGCTGCAGGGATTGCTGCTGTTGCACC
GACTGCTGTTGCACCGATTGTTGCATATTTTGCTGCTGCGGCGAGCCCTG
CTGCTGTTGGTGCTGCGAGTGGTGGCCATGCTTTG
BS11135.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6824-PA | 2928 | ovo-RA | 2212..2928 | 733..17 | 3585 | 100 | Minus |
| CG6824-PB | 4056 | ovo-RB | 3340..4056 | 733..17 | 3585 | 100 | Minus |
| CG6824-PC | 3669 | ovo-RC | 2953..3669 | 733..17 | 3585 | 100 | Minus |
| CG6824-PD | 3087 | ovo-RD | 2371..3087 | 733..17 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RE | 6763 | CG6824-RE | 4198..4914 | 733..17 | 3585 | 100 | Minus |
| ovo-RD | 5948 | CG6824-RD | 3540..4256 | 733..17 | 3585 | 100 | Minus |
| ovo-RC | 5518 | CG6824-RC | 2953..3669 | 733..17 | 3585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5068268..5068798 | 733..203 | 2655 | 100 | Minus |
| X | 23542271 | X | 5068893..5069080 | 204..17 | 940 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 03:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6900 | 724..562 | 332 | 69.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6867 | 711..562 | 304 | 68.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2511 | 724..543 | 266 | 63.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2797..2966 | 732..561 | 260 | 64.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6915 | 715..583 | 257 | 68.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2512 | 734..562 | 254 | 62.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2461 | 716..571 | 247 | 66 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6921 | 732..594 | 227 | 62.6 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 628..737 | 619..729 | 211 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..2922 | 726..563 | 209 | 64 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2535 | 734..584 | 200 | 62 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6977 | 716..576 | 196 | 61.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1165 | 724..620 | 176 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..7003 | 734..577 | 146 | 56.2 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 954..1006 | 732..678 | 117 | 70.9 | Minus |
BS11135.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:59:43 Download gff for
BS11135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6824-PC | 2952..3669 | 17..735 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:27:21 Download gff for
BS11135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6824-PD | 2370..3087 | 17..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:57:49 Download gff for
BS11135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RC | 2952..3669 | 17..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:43 Download gff for
BS11135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RC | 2952..3669 | 17..735 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:43 Download gff for
BS11135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5068267..5068798 | 203..735 | 99 | -> | Minus |
| X | 5068895..5069080 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:57:49 Download gff for
BS11135.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4962300..4962831 | 203..735 | 99 | -> | Minus |
| arm_X | 4962928..4963113 | 17..202 | 100 | | Minus |
BS11135.5prime Sequence
895 bp (781 high quality bases) assembled on 2006-04-19
> BS11135.5prime
GAAGTTATCAGTCGACATGCCGAAGATTTTCCTGATCAAAAATCGCCTGC
ATCAGCAGCAACAGCGCTTGCTTGAATCGCAAAACTTGCTGCAGCACAAG
AATCAGGATGATGAGCGCTTGGTGCCGCCCCTCAGTCCAAGTGGGAGTGG
TAGCGGCCCCTCGCCAACGCCCACATCCCAACCACCACCGGAACCGCAAG
GTCAGGGGCAACAGGTGCTCGGACAGGTGCCCGATTCAGATCAACAGCCA
CTGAGCCTCACGCGCAAACGATTCCACCATCGTCGTCACTACTTCGGACA
ATCGCGCCACAGTCTCGATCATCTCAATCAAAATCAGAGCCCGAATCCAA
ATGCAAATGCAAATCCCAATCAAATACAAAATCCTGCGGAATTGGAAGTC
GAATGCGCCACTGGCCAAGTTCAAAATGAAAACTTTGCCGCCGAGTTGCT
GCAGCGTTTGACACCAAACACTGCCACCACTGCACAAAATAATATTGTTA
ACAATTTGGTTAATAATAGCAGAGCCGCCACCTCCGTTTTAGCCACTAAA
GACTGTACAATTGAAAATTCCCCAATTAGCATACCAAAAAATCAGCGAGC
AGAGGACGAGGAGGAGCAAGAAGACCAGGAAAAAGAGAAGCCCGCAGAGC
GGGAGAGAGAGAAGTCCGATGAGAGGACAGAACAGGTAGAAAAGGAGGAG
CGGGTGGAGCGCGAAGAGGAGGAGGACGACGAGGTGGATGTCGGCGTAGA
GGCGCCACGCCCACGATTCTATAATACCGGCGTGGTCTTAACCCAGGCCC
AACGCAAGGAGTATCCCCAAGAGCCCAAGGACTTATCCCTAACCATCGCC
AAATCCTCGCCAGCTTCACCGCATATCCACAGTGACTCCCAATCC
BS11135.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6824-PB | 4056 | ovo-RB | 1..879 | 17..895 | 4370 | 99.8 | Plus |
| CG6824-PC | 3669 | ovo-RC | 26..492 | 429..895 | 2310 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RE | 6763 | CG6824-RE | 858..1737 | 16..895 | 4385 | 99.9 | Plus |
| ovo-RB | 6606 | CG6824-RB | 858..1737 | 16..895 | 4385 | 99.9 | Plus |
| ovo-RD | 5948 | CG6824-RD | 78..545 | 428..895 | 2325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5064452..5064919 | 428..895 | 2325 | 99.8 | Plus |
| X | 23542271 | X | 5049130..5049542 | 16..428 | 2065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:18:15 has no hits.
BS11135.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:59:44 Download gff for
BS11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6824-PB | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:27:22 Download gff for
BS11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6824-PB | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:30:10 Download gff for
BS11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 849..1737 | 7..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:24 Download gff for
BS11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 849..1737 | 7..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:24 Download gff for
BS11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5049121..5049542 | 7..428 | 99 | -> | Plus |
| X | 5064453..5064919 | 429..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:30:10 Download gff for
BS11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4943154..4943575 | 7..428 | 99 | -> | Plus |
| arm_X | 4958486..4958952 | 429..895 | 99 | | Plus |
BS11135.complete Sequence
4105 bp assembled on 2010-09-14
GenBank Submission: KX801800
> BS11135.complete
TATAGCATACATTATACGAAGTTATCAGTCGACATGCCGAAGATTTTCCT
GATCAAAAATCGCCTGCATCAGCAGCAACAGCGCTTGCTTGAATCGCAAA
ACTTGCTGCAGCACAAGAATCAGGATGATGAGCGCTTGGTGCCGCCCCTC
AGTCCAAGTGGGAGTGGTAGCGGCCCCTCGCCAACGCCCACATCCCAACC
ACCACCGGAACCGCAAGGTCAGGGGCAACAGGTGCTCGGACAGGTGCCCG
ATTCAGATCAACAGCCACTGAGCCTCACGCGCAAACGATTCCACCATCGT
CGTCACTACTTCGGACAATCGCGCCACAGTCTCGATCATCTCAATCAAAA
TCAGAGCCCGAATCCAAATGCAAATGCAAATCCCAATCAAATACAAAATC
CTGCGGAATTGGAAGTCGAATGCGCCACTGGCCAAGTTCAAAATGAAAAC
TTTGCCGCCGAGTTGCTGCAGCGTTTGACACCAAACACTGCCACCACTGC
ACAAAATAATATTGTTAACAATTTGGTTAATAATAGCAGAGCCGCCACCT
CCGTTTTAGCCACTAAAGACTGTACAATTGAAAATTCCCCAATTAGCATA
CCAAAAAATCAGCGAGCAGAGGACGAGGAGGAGCAAGAAGACCAGGAAAA
AGAGAAGCCCGCAGAGCGGGAGAGAGAGAAGTCCGATGAGAGGACAGAAC
AGGTAGAAAAGGAGGAGCGGGTGGAGCGCGAAGAGGAGGAGGACGACGAG
GTGGATGTCGGCGTAGAGGCGCCACGCCCACGATTCTATAATACCGGCGT
GGTCTTAACCCAGGCCCAACGCAAGGAGTATCCCCAAGAGCCCAAGGACT
TATCCCTAACCATCGCCAAATCCTCGCCAGCTTCACCGCATATCCACAGT
GACTCCGAATCCGATTCGGACTCTGATGGGGGCTGCAAGCTAATTGTGGA
CGAGAAGCCACCATTGCCGGTGATCAAACCATTGTCCCTGCGCTTGCGCA
GCACACCGCCACCGGCGGATCAACGACCAAGTCCGCCGCCTCCGCGAGAT
CCCGCGCCCGCTGTCCGCTGCTCGGTGATCCAACGGGCGCCGCAATCCCA
ATTGCCCACCAGCCGGGCTGGCTTCCTATTGCCCCCCTTGGATCAGCTAG
GACCCGAGCAGCAGGAGCCCATCGATTATCACGTGCCGAAGCGAAGGAGC
CCCTCTTATGACTCCGATGAGGAGCTGAACGCCAGGCGCCTGGAACGAGC
GCGGCAGGTGCGCGAGGCAAGACGACGCAGCACCATTTTGGCCGCACGAG
TTCTGCTCGCCCAGTCCCAAAGGCTTAATCCGCGCTTGGTGCGATCCTTG
CCCGGTATTTTGGCTGCGGCAGCCGGACACGGACGGAATAGCAGCAGTTC
CAGCGGTGCCGCCGGGCAGGGCTTTCAATCGTCCGGTTTTGGCAGCCAAA
ACAGCGGCAGCGGCTCGTCCAGTGGCAATCAGAACGCCGGCAGCGGCGCT
GGTTCACCTGGATCTGGTGCCGGTGGCGGTGGTGGTATGGGCGGTGGTCG
CGACGGCCGAGGGAACTACGGACCCAATTCACCGCCAACGGGAGCATTGC
CTCCGTTTTATGAGAGCCTCAAGAGCGGCCAACAGAGCACGGCCAGCAAC
AATACGGGCCAAAGTCCCGGCGCTAATCATTCGCATTTCAACGCAAATCC
AGCGAATTTTCTGCAAAACGCAGCAGCGGCTGCGTACATCATGTCGGCAG
GTTCCGGTGGAGGAGGCTGCACCGGAAACGGAGGTGGTGGAGCATCGGGG
CCAGGAGGTGGCCCATCGGCAAATAGTGGTGGTGGTGGTGGTGGTGGCGG
CGGCAATGGGTACATCAACTGTGGTGGTGTTGGTGGTCCAAACAATAGTC
TCGACGGTAATAATCTATTGAACTTCGCCAGTGTTTCTAACTATAACGAA
TCCAATTCCAAATTCCATAATCATCATCATCATCATCAACACAACAACAA
CAACAACAACAATGGTGGTCAAACATCTATGATGGGTCATCCCTTTTACG
GCGGTAATCCCTCAGCCTACGGCATAATACTCAAGGATGAACCGGACATT
GAGTACGACGAGGCCAAGATCGATATTGGCACCTTTGCGCAGAACATTAT
CCAGGCAACGATGGGCAGCTCCGGTCAGTTCAATGCCAGCGCCTATGAGG
ATGCTATAATGTCGGACCTGGCCAGTTCGGGTCAGTGTCCCAATGGAGCC
GTCGATCCGCTTCAGTTCACAGCCACTCTGATGCTGAGTTCGCAGACCGA
TCATTTACTGGAGCAGCTGTCCGATGCCGTGGACTTGAGTTCATTCCTGC
AAAGGAGCTGCGTGGACGACGAGGAGTCCACCAGTCCGCGGCAGGATTTC
GAGCTGGTGTCCACGCCCTCGCTAACGCCGGATTCAGTGACGCCGGTGGA
GCAGCACAATACCAATACAACCCAGCTGGATGTCCTGCACGAGAATCTGT
TGACGCAGCTGACCCACAATATAGTCCGGGGCGGCAGCAATCAGCAGCAG
CAGCACCATCAACAGCATGGTGTGCAGCAGCAACAGCAGCAGCAGCATAG
TGTGCAGCAGCAACAGCAGCACAATGTGCAACAGCAGCATGGCGTGCAGC
AGCAACATGTCCAGCAGCAACCACCGCCCTCGTATCAGCATGCCACGCGT
GGCCTGATGATGCAACAGCAGCCGCAGCACGGCGGCTATCAGCAGCAAGC
TGCCATCATGTCGCAACAGCAGCAGCAATTGCTCAGCCAGCAGCAGCAGC
AGTCGCACCACCAGCAGCAGCAGCAGCAGCAACATGCCGCTGCCTACCAG
CAGCACAACATCTATGCACAGCAGCAACAGCAGCAGCAGCAGCAGCATCA
TCAACAGCAGCAACAGCAGCAACATCATCACTTCCACCACCAGCAACAAC
AGCAGCCACAGCCACAGTCGCATCATTCGCACCATCATGGCCATGGTCAT
GACAACAGCAACATGTCGCTTCCCTCGCCAACTGCGGCTGCAGCGGCGGC
GGCCGCTGCTGCTGCTGCTGCGGCAGCCGCAGCCGCTCATCTGCAGCGTC
CGATGAGCAGCAGCAGCAGCTCCGGCGGCACCAATAGCAGCAACAGTAGC
GGTGGCAGCAGCAACAGTCCGCTCCTAGATGCAAACGCTGCTGCGGCAGC
TGCAGCTGCTTTGTTGGACACAAAGCCACTCATCCAAAGCTTGGGCTTGC
CGCCGGATCTGCAGCTTGAGTTTGTGAACGGCGGCCATGGCATTAAGAAC
CCGCTGGCCGTGGAGAATGCCCACGGTGGCCATCACCGAATTCGCAACAT
CGATTGCATTGATGATCTCAGCAAGCATGGCCACCACTCGCAGCACCAAC
AGCAGCAGGGCTCGCCGCAGCAGCAAAATATGCAACAATCGGTGCAACAG
CAGTCGGTGCAACAGCAGCAATCCCTGCAGCAGCAACAGCAGCAGCAGCA
CCATCAGCACCACAGTAACAGCAGTGCAAGCAGCAATGCCAGCAGTCATG
GATCCGCCGAAGCCCTTTGCATGGGCTCATCCGGCGGAGCCAATGAGGAT
TCGTCGTCGGGCAACAATAAGTTCGTCTGCCGCGTCTGCATGAAGACATT
CTCGCTGCAGCGCCTGCTCAATCGGCACATGAAGTGTCACTCGGACATCA
AGCGGTATCTGTGCACGTTCTGCGGCAAGGGATTCAACGACACCTTCGAC
CTCAAGCGCCACACGCGCACCCACACGGGCGTCCGGCCGTACAAGTGCAA
TCTCTGCGAGAAGAGCTTCACGCAGCGCTGTTCCCTCGAGTCGCACTGCC
AGAAGGTGCATAGCGTTCAGCACCAGTATGCCTACAAGGAGCGCAGAGCC
AAGATGTACGTGTGCGAGGAGTGCGGACACACCACCTGCGAGCCGGAGGT
CCACTATCTGCACCTGAAGAACAACCATCCGTTCTCGCCGGCGCTGCTTA
AGTTCTACGACAAGCGGCACTTTAAGTTCACCAACTCGCAGTTCGCCAAC
AATCTGCTCGGCCAGCTGCCCATGCCAGTCCACAATTAGAAGCTTTCTAG
ACCAT
BS11135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RE | 4056 | CG6824-PE | 1..4056 | 34..4089 | 20280 | 100 | Plus |
| ovo-RB | 4056 | CG6824-PB | 1..4056 | 34..4089 | 20280 | 100 | Plus |
| ovo-RC | 3669 | CG6824-PC | 26..3669 | 446..4089 | 18220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RE | 6763 | CG6824-RE | 858..4914 | 33..4089 | 20285 | 100 | Plus |
| ovo-RB | 6606 | CG6824-RB | 858..4914 | 33..4089 | 20285 | 100 | Plus |
| ovo-RC | 5518 | CG6824-RC | 26..3669 | 446..4089 | 18220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5064452..5067247 | 445..3240 | 13980 | 100 | Plus |
| X | 23542271 | X | 5068136..5068798 | 3241..3903 | 3315 | 100 | Plus |
| X | 23542271 | X | 5049130..5049542 | 33..445 | 2065 | 100 | Plus |
| X | 23542271 | X | 5068893..5069080 | 3902..4089 | 940 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2966 | 2868..3545 | 497 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2272..2989 | 2683..3404 | 445 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2270..2922 | 2846..3543 | 411 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6900 | 3369..3544 | 339 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2865 | 2712..3209 | 335 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7219 | 2647..3148 | 322 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..3012 | 2535..2940 | 316 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6867 | 3395..3544 | 304 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2511 | 3382..3563 | 266 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2512 | 3369..3544 | 256 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6923 | 3369..3522 | 255 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2461 | 3390..3535 | 247 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6921 | 3369..3512 | 231 | 63.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 628..737 | 3487..3377 | 211 | 70.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2535 | 3368..3522 | 207 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6977 | 3369..3530 | 199 | 60.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1165 | 3382..3486 | 176 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7003 | 3374..3529 | 145 | 56.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 948..1006 | 3368..3428 | 129 | 70.5 | Plus |
BS11135.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:44:02 Download gff for
BS11135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 825..4890 | 24..4089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:35 Download gff for
BS11135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 849..4914 | 24..4089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:14 Download gff for
BS11135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 849..4914 | 24..4089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:14 Download gff for
BS11135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5049121..5049542 | 24..445 | 99 | -> | Plus |
| X | 5064453..5067247 | 446..3240 | 100 | -> | Plus |
| X | 5068136..5068798 | 3241..3903 | 100 | -> | Plus |
| X | 5068895..5069080 | 3904..4089 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:35 Download gff for
BS11135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4943154..4943575 | 24..445 | 99 | -> | Plus |
| arm_X | 4958486..4961280 | 446..3240 | 100 | -> | Plus |
| arm_X | 4962169..4962831 | 3241..3903 | 100 | -> | Plus |
| arm_X | 4962928..4963113 | 3904..4089 | 100 | | Plus |
BS11135.pep Sequence
Translation from 33 to 4088
> BS11135.pep
MPKIFLIKNRLHQQQQRLLESQNLLQHKNQDDERLVPPLSPSGSGSGPSP
TPTSQPPPEPQGQGQQVLGQVPDSDQQPLSLTRKRFHHRRHYFGQSRHSL
DHLNQNQSPNPNANANPNQIQNPAELEVECATGQVQNENFAAELLQRLTP
NTATTAQNNIVNNLVNNSRAATSVLATKDCTIENSPISIPKNQRAEDEEE
QEDQEKEKPAEREREKSDERTEQVEKEERVEREEEEDDEVDVGVEAPRPR
FYNTGVVLTQAQRKEYPQEPKDLSLTIAKSSPASPHIHSDSESDSDSDGG
CKLIVDEKPPLPVIKPLSLRLRSTPPPADQRPSPPPPRDPAPAVRCSVIQ
RAPQSQLPTSRAGFLLPPLDQLGPEQQEPIDYHVPKRRSPSYDSDEELNA
RRLERARQVREARRRSTILAARVLLAQSQRLNPRLVRSLPGILAAAAGHG
RNSSSSSGAAGQGFQSSGFGSQNSGSGSSSGNQNAGSGAGSPGSGAGGGG
GMGGGRDGRGNYGPNSPPTGALPPFYESLKSGQQSTASNNTGQSPGANHS
HFNANPANFLQNAAAAAYIMSAGSGGGGCTGNGGGGASGPGGGPSANSGG
GGGGGGGNGYINCGGVGGPNNSLDGNNLLNFASVSNYNESNSKFHNHHHH
HQHNNNNNNNGGQTSMMGHPFYGGNPSAYGIILKDEPDIEYDEAKIDIGT
FAQNIIQATMGSSGQFNASAYEDAIMSDLASSGQCPNGAVDPLQFTATLM
LSSQTDHLLEQLSDAVDLSSFLQRSCVDDEESTSPRQDFELVSTPSLTPD
SVTPVEQHNTNTTQLDVLHENLLTQLTHNIVRGGSNQQQQHHQQHGVQQQ
QQQQHSVQQQQQHNVQQQHGVQQQHVQQQPPPSYQHATRGLMMQQQPQHG
GYQQQAAIMSQQQQQLLSQQQQQSHHQQQQQQQHAAAYQQHNIYAQQQQQ
QQQQHHQQQQQQQHHHFHHQQQQQPQPQSHHSHHHGHGHDNSNMSLPSPT
AAAAAAAAAAAAAAAAAAHLQRPMSSSSSSGGTNSSNSSGGSSNSPLLDA
NAAAAAAAALLDTKPLIQSLGLPPDLQLEFVNGGHGIKNPLAVENAHGGH
HRIRNIDCIDDLSKHGHHSQHQQQQGSPQQQNMQQSVQQQSVQQQQSLQQ
QQQQQHHQHHSNSSASSNASSHGSAEALCMGSSGGANEDSSSGNNKFVCR
VCMKTFSLQRLLNRHMKCHSDIKRYLCTFCGKGFNDTFDLKRHTRTHTGV
RPYKCNLCEKSFTQRCSLESHCQKVHSVQHQYAYKERRAKMYVCEECGHT
TCEPEVHYLHLKNNHPFSPALLKFYDKRHFKFTNSQFANNLLGQLPMPVH
N*
BS11135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-PE | 1351 | CG6824-PE | 1..1351 | 1..1351 | 7180 | 100 | Plus |
| ovo-PB | 1351 | CG6824-PB | 1..1351 | 1..1351 | 7180 | 100 | Plus |
| ovo-PC | 1222 | CG6824-PC | 9..1222 | 138..1351 | 6441 | 99.9 | Plus |
| ovo-PD | 1028 | CG6824-PD | 1..572 | 502..1073 | 3032 | 99.5 | Plus |
| ovo-PA | 975 | CG6824-PA | 1..519 | 502..1073 | 2635 | 89.9 | Plus |
| ovo-PD | 1028 | CG6824-PD | 440..1028 | 828..1351 | 1648 | 60.4 | Plus |
