Clone Sequence Records
BS11139.complete Sequence
4409 bp assembled on 2009-12-07
GenBank Submission: KX804405
> BS11139.complete
GAAGTTATCAGTCGACATGATTATGCGACGGGCCAGTGCCTGCACAATGC
CATCGAGTGGCGGAGGAGGAGGAGCAGGTGTTGGTAGTTCCCAGAGAGAG
GAGGCCACCACACCGGGTGAATCGCCCGGAGGACGCCTGTCCCGCTGGTT
TTCCATCAGGCGCGGCTCATCGCACCAGTATGACGTTGGAGGACGCGATG
GACGCCACTCGACCGCCTCCAGTTTCGATACGCCCGATTCGGGTTCGGGA
AATTCACCGAAAAACGGATCCAATGCGGTCGCTGGAACCGGGGGAGCAGG
ATCCCAAGGAGTAGCGCTGGACGCAGCTTCACCACAGAAATTGGCCAATT
TGGGAGCCAGCAAAATGATGCCCGGAGTGCCAGAGTCGGAGGATGACGAG
GCGACTGCCAATCGCTTCGATGTGGACCTTATGATGACGCCTGGCAGTCG
GGCCAATGGAACTGCTCGAACCGCCCACAACCGGCTGATTGTACCCATGT
TGCCGCCCGCCCCCGCAGGACTGTCCCAGCAACAGCTGAAGAGGCGCCAC
ATTGTGGCAGCCATTGTGCACAGTGAGAACTCGTATGTGGCCACCCTGCA
GCGACTAGTCAATGATTACAAGAAACCGCTGGAGGAGTGCAGCCCGCCAG
TCCTGAATCCGGTGAAGATAGCCACCCTGTTCCATTGCCTGCCGGACATC
TTGCACTCGCACAAGTTGTTCCGGATCTCGTTGGCGGAGTGCGTCCGGAA
CTGGGATCGCGATGAGAAGATCGGCGATTGCTTTGTGAGCGCGTTTGGAA
AGCCGCAGCTACTAGAGATTTACTCCGGTTTCATCAACAACTTCTCGGCG
GCCATGGAGCTGGCCAAGATGGAGGAAAAGCGCAAATCGGCACTGGCCGA
TTTCTTTAAGGTCAAGCAGATCAGTGCCCACGATCGGTTGTCGTTTTTCG
GACTGATGGTGAAGCCGGTGCAGCGTTTCCCCCAGTTCATCCTCTTCCTG
CAGGATCTGCTGAAATACACGCCACAGGGCCACCACGACAGGATGTCGCT
GCAGTTGGCCCTGTCGCAGCTGGAACTCCTGGCGGAGCTCCTCAACGAGA
GCAAACGGGAGGCGGAGCAGTACCAGGCCTTTAAGGAGATGCTTGGCCAC
ATCTCGGGCACCTTCAATGCCCGATCCCTGAGTTTGAGCAGCGTCAGTGT
CAGCGACTCTGCCGGCGGCCATCGGCCGAGGTACTTACTCCGCGAGGACA
ACGTCACCCACATGGAGTTCAACCAGGCCGGTTTCATTGTCAAGTGCAAG
CAGCGGCGGCTGCTCCTGCTCAACGATAAGGTCATTTGCGTGTCGGTGGC
GCCCAAGCAGTCGCACGATTTCGGGGCCACCGAGAAACTCACCTTCAAGT
GGATGTTTCCAGTCAACGATGTCGAGATTGTGGACAACAGCACGTCGGCC
ACGCTCTCGAGGATTCTTACGGCGGGTCTCAACCGCGGCGGCAGCTTGAA
GTCCAATGGCAGCAGTGGTGCCAACGGCAGCCCGTATGCGAATAGTACTC
TTCCTGGACATGGAGGTGGCGTGTCGGGCTTCTCCGGCTTTGGGGATCCG
CACAGCTCGCCAGCCGCACAGCTGACAAACGGGGCGGACAATCTGTGCAG
CGAGATGAGCACGCTGATGTATGACTACGAGGTGATTTCTCGCATTCAGG
ATCTAGTTTCCAGTTTGAAGGGCAGCTACAAGGAGCTAAACGCGAATACC
ACGCGCAACGTGCTCAATCTTATCCAAGGCTCCATCCAGCGCAAGGACGA
GGAGATGGCCTGGGTAGACTCTTGCTGCCTGCAGCTCATTGGACGACACA
AGTCCGGCAAGGAGGAAACCTTCACATTCCAGACGCAGACGCCTGCGGTG
AAGAAGGAGTGGATCACAGAGTTGCGTCTGGCTCAGCTGGCCCTCGATCC
GAACAATTCGCCAGCCTGGGAACGTGGTGGCTCCCATCCTCAGCCCGCCC
ATCATCACCCACATCATCATCCGCTGCAGCATCCGCATGCGGGAGCTGGC
GATCCCCGCCAGACGCAGGAGCAACTGCAGCTGCAGGAAGCCGTACAGCA
GAAGCAGTCGCGTAAAATGCCGCTCTTTGTCAAGGCGATGCCTGTCTACA
AATCACAGCATCAAACCGAGGTGCGCTGTGGATGTTACTACAGCATCGCC
AATGACACCAAACAGAGCGGAAACGCGCGACGCCGGCACAAGCAGCTCAA
TTACCTGTGGATGTGCAGCAGCGATGGCACCTCCTCGCACATCACCGTTT
TAGCCCAACACCCTCAGCAGGCGGGCAATCTTCGCGAGGCGGGTGCCTTT
GACCTTTTTGAGACCCAGGTCTCTGCGTTGGAGTTCGTCAAGGGACTGGA
TCAGCTGAAGTCGCGAGATGAGCCGGCCAGTCTGCTGGGCGATCTGGTTT
GGCTGGGCACGGATAGCCGCAAGATTCTGATCTACTCGGCACGGAATCCC
GAGCAGGAGGAGCAGCTGGGAAGCTATTCGGTACCGGGAGCAGTTCAGCG
AATCCTTTATCACTTCGATGCGGTTTATGTGGCTCTTTCGGGAGCCACGG
TGCTCATTTTCCGCAGAGGAAACGATGGCGTTTGGCAGTTGCGAGACCCG
CAGACCATCCGTCTCGGTGACACCGATCTGGTGGTGCCCAGCCTTTTGCC
GATCAACATGTGCATCTACGCTTCGTGCGGCAACCGAGTGTACGTTATGA
ACGCCCTGAACGGCGAGATCCAGCGCAGCTTTGAAGTGCAGCACGGGGCC
ACTCAGCAGGTGAATCTAATGGCCCACTCCGGCATCGGTTTGTGGATCTC
GCTGAAGAACTCGACAATGTTGTGCCTGTACCACACGGAGACGTTTAAGC
ATCTGCAGGACATCAACATAGCATCCAGTGTACTGCGACACGATGGCAAA
AAGGAGCAGCCGCTGAACAATAGCTCGGTGTATGTGACCGCCCTGATGGC
CTGCAAGGGTTTGCTGTGGGTGGGCACCAATGTGGGTATTGCGGTGACCA
TTCCACTGCCCCGTCTGGAGGGAGTGCCCATCATCAGCGGTGGAATCAAC
ATGTCCTGTCACGCGCACTTTGGACCCATCACCTTTTTGTTGCCACTGAT
TCCAAAGGTTTATCCCGCCTACAAGCCACCGACCGTGGGTGCAGCTCCAT
TGGTACCCAGCATGGGAGATGACCTCCAGCTGCCGGCCATTGATGCGGAT
CCAAAGATCCAGGAGTTGGACGACGGGGCCGTGGTGTTGCGTCGTGACCT
TGCTAAGGAAGAGATGTCGTCCAGTAATCCCGGAGCAGATTCAACTGCCT
CATCACCGCGCAGCTCCAAACTGGACAAGCAGAATTCGCTGGACCAGAGT
TTTACTGCAAAAATACGCGCTTCGCTGGCAAATTCGCCGGCTTTCCACCG
CAAGCGTTTCCGCGATGATCCGAATAGAATGTCCAAAACTTTACCCCGTG
GCCTGGGAGCCGCGGCAGCCGGCAGCGGAGCAGGAGGAGCAAGTGCAGCA
GGATCGGGAACAGCCAGTGGTAACACTTCGCAGCATGGCGAGCACGGTAT
CTGCGACGTTTACGGCCTGTATGGCAAGCTAATATTCGTGAAGGAGGACT
ACGATGCGGAGGAGGGCAATCAGGGCAACCTAATGGACATGATGTATGAG
GGTATGAGACGCTCTGATCCAGAATTGGCAGCTATACCCGGCAAGGTGTG
CACCCTGGATAGACGTTTGCGCATGAAGGCATCGCGACCAAGGTCGTTGG
ACCTCTCAAACTGGTCGGTGGACTCCAAGTCCTCCAGTCTGTATACATCG
TCGGGCAGCGAAGAGAGCATGGGCATCCGGCACTTTGGCGGACGTTCTGT
GTCCCGCAACAGCAGCAGTGCCAGCCACAAGACATCCGGCACAGGCAGTG
ATCTGGGCAACATATCAGAGAACGGCCTCATGACCACGGCGGACATCCAT
CACCATCAGCAGCAGCAACAGCAGCTGAATAGCTCCGCCAAGCCAGATGA
GATGAGCCGACTCGGCGCAGGGAACTCGGGACTGGACAAGCCAGCCGCCG
CGGTGGCCACTTTAAAGCGAAAACAGAAGCAGAACTCCAAGCAGCAGCAG
CAACAGAACGCCGACGGACCAAGGACAGTGATCACCCTGATGGGCGGACG
CGGCTACTGGCGCCAGATGTGGTACAACGGGGCGGGTGGTTCGCCCAGCC
ATAAGAACAGCAGCTCCGGCGGCGGCGGAGGCAGTGGCTCCGGATTCAGT
GGCCAAACAATGCAGTCGGGTAATCCCAGCTGCTCACCGCTGACGGCCAA
CTCCAATGACGCCCACATCGTTGTCTGGGAGAAGAAGTTATAAAAGCTTT
CTAGACCAT
BS11139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43658-RD | 5211 | CG43658-PD | 833..5211 | 15..4393 | 21745 | 99.8 | Plus |
| CG43658-RC | 6792 | CG43658-PC | 2414..6792 | 15..4393 | 21745 | 99.8 | Plus |
| CG43658-RF | 4692 | CG43658-PF | 1..4377 | 17..4393 | 21735 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43658-RF | 7067 | CG43658-RF | 1025..5403 | 15..4393 | 21745 | 99.8 | Plus |
| CG43658-RH | 7346 | CG43658-RH | 1304..5682 | 15..4393 | 21745 | 99.8 | Plus |
| CG43658-RG | 7249 | CG43658-RG | 1207..5585 | 15..4393 | 21745 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17458221..17460445 | 4393..2169 | 11095 | 99.9 | Minus |
| X | 23542271 | X | 17461260..17462123 | 1477..614 | 4260 | 99.5 | Minus |
| X | 23542271 | X | 17460502..17461199 | 2172..1475 | 3430 | 99.4 | Minus |
| X | 23542271 | X | 17463876..17464246 | 385..15 | 1855 | 100 | Minus |
| X | 23542271 | X | 17463592..17463822 | 614..384 | 1155 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6861 | 4005..4155 | 129 | 59.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 831..1012 | 3845..4026 | 126 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6824 | 3998..4033 | 119 | 83.8 | Plus |
BS11139.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:21 Download gff for
BS11139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8557-RC | 784..5158 | 17..4391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:45 Download gff for
BS11139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43658-RG | 1209..5583 | 17..4391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:55 Download gff for
BS11139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8557-RB | 917..5291 | 17..4391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:11 Download gff for
BS11139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43658-RG | 1209..5583 | 17..4391 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:11 Download gff for
BS11139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17463593..17463820 | 386..613 | 100 | <- | Minus |
| X | 17458223..17460443 | 2171..4391 | 99 | <- | Minus |
| X | 17460504..17461198 | 1476..2170 | 99 | <- | Minus |
| X | 17461262..17462123 | 614..1475 | 99 | <- | Minus |
| X | 17463876..17464244 | 17..385 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:45 Download gff for
BS11139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17357626..17357853 | 386..613 | 100 | <- | Minus |
| arm_X | 17352256..17354476 | 2171..4391 | 99 | <- | Minus |
| arm_X | 17354537..17355231 | 1476..2170 | 99 | <- | Minus |
| arm_X | 17355295..17356156 | 614..1475 | 99 | <- | Minus |
| arm_X | 17357909..17358277 | 17..385 | 100 | | Minus |
BS11139.3prime Sequence
781 bp (755 high quality bases) assembled on 2006-04-19
> BS11139.3prime
ATGGTCTAGAAAGCTTTTATAACTTCTTCTCCCAGACAACGATGTGGGCG
TCATTGGAGTTGGCCGTCAGCGGTGAGCAGCTGGGATTACCCGACTGCAT
TGTTTGGCCACTGAATCCGGAGCCACTGCCTCCGCCGCCGCCGGAGCTGC
TGTTCTTATGGCTGGGCGAACCACCCGCCCCGTTGTACCACATCTGGCGC
CAGTAGCCGCGTCCGCCCATCAGGGTGATCACTGTCCTTGGTCCGTCGGC
GTTCTGTTGCTGCTGCTGCTTGGAGTTCTGCTTCTGTTTTCGCTTTAAAG
TGGCCACCGCGGCGGCTGGCTTGTCCAGTCCCGAGTTCCCTGCGCCGAGT
CGGCTCATCTCATCTGGCTTGGCGGAGCTATTCAGCTGCTGTTGCTGCTG
CTGATGGTGATGGATGTCCGCCGTGGTCATGAGGCCGTTCTCTGATATGT
TGCCCAGATCACTGCCTGTGCCGGATGTCTTGTGGCTGGCACTGCTGCTG
TTGCGGGACACAGAACGTCCGCCAAAGTGCCGGATGCCCATGCTCTCTTC
GCTGCCCGACGATGTATACAGACTGGAGGACTTGGAGTCCACCGACCAGT
TTGAGAGGTCCAACGACCTTGGTCGCGATGCCTTCATGCGCAAACGTCTA
TCCAGGGTGCACACCTTGCCGGGTATAGCTGCCAATTCTGGATCAGAGCG
TCTCATACCCTCATACATCATGTCCATTAGGTTGCCCTGATTGCCCTCCT
CCGCATCGTAGTCCTCCTTCACGAATATTAG
BS11139.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8557-PA | 4377 | CG8557-RA | 3616..4377 | 778..17 | 3810 | 100 | Minus |
| CG8557-PB | 5223 | CG8557-RB | 4462..5223 | 778..17 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43658-RF | 7067 | CG43658-RF | 4642..5403 | 778..17 | 3810 | 100 | Minus |
| CG43658-RH | 7346 | CG43658-RH | 4921..5682 | 778..17 | 3810 | 100 | Minus |
| CG43658-RG | 7249 | CG43658-RG | 4824..5585 | 778..17 | 3810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17458221..17458982 | 17..778 | 3810 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 13:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..7127 | 506..188 | 178 | 55.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2502 | 412..224 | 151 | 60.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..7002 | 503..252 | 147 | 57.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2526 | 412..245 | 137 | 56.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6861 | 405..255 | 129 | 59.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6932 | 412..241 | 127 | 55.6 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 831..1012 | 565..384 | 126 | 58.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6824 | 412..377 | 119 | 83.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6841 | 488..369 | 115 | 57.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2373 | 412..385 | 113 | 89.3 | Minus |
| TART-A | 13424 | TART-A 13424bp | 11032..11073 | 294..253 | 111 | 73.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1548..1590 | 412..369 | 109 | 77.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1158 | 412..370 | 109 | 75 | Minus |
BS11139.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:59:52 Download gff for
BS11139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8557-PA | 3613..4377 | 17..781 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:27:32 Download gff for
BS11139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8557-PB | 4459..5223 | 17..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:58 Download gff for
BS11139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43658-RG | 4821..5589 | 13..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:03:43 Download gff for
BS11139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43658-RG | 4821..5589 | 13..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:03:43 Download gff for
BS11139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17458217..17458985 | 13..781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:58 Download gff for
BS11139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17352250..17353018 | 13..781 | 99 | | Plus |
BS11139.5prime Sequence
891 bp (751 high quality bases) assembled on 2006-04-19
> BS11139.5prime
GAAGTTATCAGTCGACATGATTATGCGACGGGCCAGTGCCTGCACAATGC
CATCGAGTGGCGGAGGAGGAGGAGCAGGTGTTGGTAGTTCCCAGAGAGAG
GAGGCCACCACACCGGGTGAATCGCCCGGAGGACGCCTGTCCCGCTGGTT
TTCCATCAGGCGCGGCTCATCGCACCAGTATGACGTTGGAGGACGCGATG
GACGCCACTCGACCGCCTCCAGTTTCGATACGCCCGATTCGGGTTCGGGA
AATTCACCGAAAAACGGATCCAATGCGGTCGCTGGAACCGGGGGAGCAGG
ATCCCAAGGAGTAGCGCTGGACGCAGCTTCACCACAGAAATTGGCCAATT
TGGGAGCCAGCAAAATGATGCCCGGAGTGCCAGAGTCGGAGGATGACGAG
GCGACTGCCAATCGCTTCGATGTGGACCTTATGATGACGCCTGGCAGTCG
GGCCAATGGAACTGCTCGAACCGCCCACAACCGGCTGATTGTACCCATGT
TGCCGCCCGCCCCCGCAGGACTGTCCCAGCAACAGCTGAAGAGGCGCCAC
ATTGTGGCAGCCATTGTGCACAGTGAGAACTCGTATGTGGCCACCCTGCA
GCGACTAGTCAATGATTACAAGAAACCGCTGGAGGAGTGCAGCCCGCCAG
TCCTGAATCCGGTGAAGATAGCCACCCTGTTCCATTGCCTGCCGGACATC
TTGCACTCGCACAAGTTGTTCCGGATCTCGTTGGCGGAGTGCGTCCGGAA
CTGGGATCGCGATGAGAAGATCGGCGATTGCTTTGTGAGCGCGTTTGGAA
AGCCGCAGCTACTAGAGATTTACTCCGGTTTCATCAACAACTTCTCGGCG
GCCATGGAGCTGGCCAAGATGGAGGAAAAGCGCAAATCGGC
BS11139.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8557-PB | 5223 | CG8557-RB | 845..1721 | 15..891 | 4335 | 99.7 | Plus |
| CG8557-PA | 4377 | CG8557-RA | 1..875 | 17..891 | 4325 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43658-RF | 7067 | CG43658-RF | 1025..1901 | 15..891 | 4355 | 99.8 | Plus |
| CG43658-RH | 7346 | CG43658-RH | 1304..2180 | 15..891 | 4355 | 99.8 | Plus |
| CG43658-RG | 7249 | CG43658-RG | 1207..2083 | 15..891 | 4355 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17463876..17464246 | 385..15 | 1855 | 100 | Minus |
| X | 23542271 | X | 17461846..17462123 | 891..614 | 1360 | 99.3 | Minus |
| X | 23542271 | X | 17463592..17463822 | 614..384 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:32:54 has no hits.
BS11139.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:59:53 Download gff for
BS11139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8557-PB | 841..1721 | 10..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:27:34 Download gff for
BS11139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8557-PB | 841..1721 | 10..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:10:46 Download gff for
BS11139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43658-RG | 1203..2083 | 10..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:03 Download gff for
BS11139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43658-RG | 1203..2083 | 10..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:03 Download gff for
BS11139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17461846..17462123 | 614..891 | 99 | <- | Minus |
| X | 17463593..17463820 | 386..613 | 100 | <- | Minus |
| X | 17463876..17464250 | 10..385 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:10:46 Download gff for
BS11139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17355879..17356156 | 614..891 | 99 | <- | Minus |
| arm_X | 17357626..17357853 | 386..613 | 100 | <- | Minus |
| arm_X | 17357909..17358283 | 10..385 | 99 | | Minus |
BS11139.pep Sequence
Translation from 16 to 4392
> BS11139.pep
MIMRRASACTMPSSGGGGGAGVGSSQREEATTPGESPGGRLSRWFSIRRG
SSHQYDVGGRDGRHSTASSFDTPDSGSGNSPKNGSNAVAGTGGAGSQGVA
LDAASPQKLANLGASKMMPGVPESEDDEATANRFDVDLMMTPGSRANGTA
RTAHNRLIVPMLPPAPAGLSQQQLKRRHIVAAIVHSENSYVATLQRLVND
YKKPLEECSPPVLNPVKIATLFHCLPDILHSHKLFRISLAECVRNWDRDE
KIGDCFVSAFGKPQLLEIYSGFINNFSAAMELAKMEEKRKSALADFFKVK
QISAHDRLSFFGLMVKPVQRFPQFILFLQDLLKYTPQGHHDRMSLQLALS
QLELLAELLNESKREAEQYQAFKEMLGHISGTFNARSLSLSSVSVSDSAG
GHRPRYLLREDNVTHMEFNQAGFIVKCKQRRLLLLNDKVICVSVAPKQSH
DFGATEKLTFKWMFPVNDVEIVDNSTSATLSRILTAGLNRGGSLKSNGSS
GANGSPYANSTLPGHGGGVSGFSGFGDPHSSPAAQLTNGADNLCSEMSTL
MYDYEVISRIQDLVSSLKGSYKELNANTTRNVLNLIQGSIQRKDEEMAWV
DSCCLQLIGRHKSGKEETFTFQTQTPAVKKEWITELRLAQLALDPNNSPA
WERGGSHPQPAHHHPHHHPLQHPHAGAGDPRQTQEQLQLQEAVQQKQSRK
MPLFVKAMPVYKSQHQTEVRCGCYYSIANDTKQSGNARRRHKQLNYLWMC
SSDGTSSHITVLAQHPQQAGNLREAGAFDLFETQVSALEFVKGLDQLKSR
DEPASLLGDLVWLGTDSRKILIYSARNPEQEEQLGSYSVPGAVQRILYHF
DAVYVALSGATVLIFRRGNDGVWQLRDPQTIRLGDTDLVVPSLLPINMCI
YASCGNRVYVMNALNGEIQRSFEVQHGATQQVNLMAHSGIGLWISLKNST
MLCLYHTETFKHLQDINIASSVLRHDGKKEQPLNNSSVYVTALMACKGLL
WVGTNVGIAVTIPLPRLEGVPIISGGINMSCHAHFGPITFLLPLIPKVYP
AYKPPTVGAAPLVPSMGDDLQLPAIDADPKIQELDDGAVVLRRDLAKEEM
SSSNPGADSTASSPRSSKLDKQNSLDQSFTAKIRASLANSPAFHRKRFRD
DPNRMSKTLPRGLGAAAAGSGAGGASAAGSGTASGNTSQHGEHGICDVYG
LYGKLIFVKEDYDAEEGNQGNLMDMMYEGMRRSDPELAAIPGKVCTLDRR
LRMKASRPRSLDLSNWSVDSKSSSLYTSSGSEESMGIRHFGGRSVSRNSS
SASHKTSGTGSDLGNISENGLMTTADIHHHQQQQQQLNSSAKPDEMSRLG
AGNSGLDKPAAAVATLKRKQKQNSKQQQQQNADGPRTVITLMGGRGYWRQ
MWYNGAGGSPSHKNSSSGGGGGSGSGFSGQTMQSGNPSCSPLTANSNDAH
IVVWEKKL*
BS11139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43658-PF | 1563 | CG43658-PF | 1..1458 | 1..1458 | 7600 | 100 | Plus |
| CG43658-PH | 1458 | CG43658-PH | 1..1458 | 1..1458 | 7600 | 100 | Plus |
| CG43658-PG | 1563 | CG43658-PG | 1..1458 | 1..1458 | 7600 | 100 | Plus |
| CG43658-PE | 1458 | CG43658-PE | 1..1458 | 1..1458 | 7600 | 100 | Plus |
| CG43658-PD | 1736 | CG43658-PD | 279..1736 | 1..1458 | 7600 | 100 | Plus |
