Clone Sequence Records
BS11161.complete Sequence
5783 bp assembled on 2009-12-07
GenBank Submission: KX801042
> BS11161.complete
GAAGTTATCAGTCGACATGGCGAAGATGGCATCTGGAGATCTATCGCTGA
CTAGTACGAGTAGCCAGGAAGAAGAGAGCTCGGAGTATGTGGGCTATGAT
AATACCCTACGACCGCCGTCCAATTCCAGCGGCAGCACCACAGCTGCCAA
CATGTCCAACAACAACGGGCCCTCGAAGGGCGTCAGTAGCGGTGTGGGCG
TGTCGGGCATTTCTGGTGGAAACGGCGCAAATTACGATATACTGCAGGCG
CAGTACAAGTCCGCACTTTTGGAGCTAAATACCCTACGCCACCAGCATGC
GAACACCAAGAGGCGATGCGATGAGTTAGCCACCGAGTTAACTCTGTACC
AGGAGCATTACGTGGCCGATCGTAACAAGTTCACCGATATGGTGGAGGAG
AGCGCCCGTTTCAAGCGTCTGCTATTGGAGACCCAAAACCAACAGAGCCA
GCAGGCCCAGAATGGAAATAGCCAAGTGCCGCCAGTCGGCAGTGGGAATC
CTTATTATTTTGGCAAGACGCAGGGATGCGATGGAAGCTGCAGTGAGAAG
CTGGCCGAACTGAAGAAAGAGCGAAATATGGTCGCCGTGGAGAGGGAGAA
GTACAAGAAGTCCTACATCGAGCTTGAAAAGGATCGCAACTACTACCGGG
AGCGAGGCGATGAAAATCAGAAACTGAAGGTTCTTCTCTCCCAGGAGAGT
AAGAATGTGCTTTCCCTTACCGAGGAGCTTAATCAACTGCTCTCAGAGAA
GGACAACGTGCTGCAGGAGCACCAGAAGATGTCCGACGATCTGGTTCTGG
CCAACAAAGAAATTGAGAGGCTCAAAAAGGACGAACAGCTTGCCAGGGCT
GAAATCAAGGTTCTACAGCTGGCCAATGCGGACCTTAAAAAGCGCGATCT
TCTAAAGTCTCGCGATAGCTCGTGGTCCAAAGAATTTCCGAGTGGAAAGG
AGCTGGAGAACAGCAAGGAACTGGAAAAGCTGCGCAAGAGCTTAGAAAAG
GCCCTCTCGGAGGTGGAGCGTTCAAGCCAGGATGCCGAAGAAGCGAAGCG
CGTAAGGGATTGGGCCATATCGCAACGTGAGAAGATCGTGCAGGAGCGGG
ATTCGGTGAAGACGCTCTGTGATAAAATGCGCCACGAGAGAGATAAAGCC
ATCTCCGACTCGCTGATGGCCATCCGGGATAGCGAAAAGATTAAAAAGCA
GAAGGACGAAGCGCAGAAAAAGATCGACTTGTTGAAAGAACAAATGGAGC
AGCAAGAGCGCCAAAATCTTGACAGTAACGCCTCCGGATCCCGACGCAGT
TTCCGCCCAAGCAGTTACGAAGGTGAGGATCTCCTGGAAGTAGAGCTGTC
CGGCTACGAGCACACGTCCGACCTGGGCATCATCCTGGATGACAGCAACA
AGCGAAAATTAGTGTGTGGCGTTACCAGCAGTTCCCCCGCCTGCGGGAAG
CTCAAGATTAACGATGTGATCTGCAAGGTGAACAACTTGGACTGCCAGTC
TTTGTCGAAACGGATGGTTCTTGATGAGATCCGCGCCTGTGCTCCTCGTT
CCCTCCTGCTCGTTTCCCGAACTCGTCACAGCAAACGGCACGCCTATTCT
GTTCAGCTAAAGACTAGGGATAGGGATTGCCCGCATGGCCTGCAACTGGA
CATGGGAGTGTTCATTGCAAAGATCGAGCAAAATTCGCTAGCCTTCTACG
AACCAGAGCTGGACGTTGGCGACCGAGTGTTAAGCATTAACAACAAGTCT
ATGGACTCAGTGCAGTCAATCGAGGAAGTGATGCAGTTGATGAATGATCC
CCGAAGCGATGGGCTCAATCTGTTTGCCCTTAAATACGTACAGGATCAGT
TACCCCCGGGAATGACCACCTCGTCGGCGCAGACAGATTCCATTGACTCC
ATGCAGCATGTCTCAAGTGCCGGGGGAGGTGGAGGAAGTGGGCCCAGTAG
CGCCACCAAACATCCGTCCAGGTTCGCGGAATTTTTCTTCCGAAAGCTTA
AGTTCAGCAAACCAGGCACACCAGAGGATAACTTTGAGCAGGAGCACGAC
GACGCCATCGCTGCTTTGGATTCTGTGCTCAGTGAAAACAGCTCTGAGAA
GAGCAAGGAGAATCTGTTCAACCGCAAGAAGCGGACCAAGAAGGAGAAAG
AGGCCTCCAAGAGCATGGGTACCTGGCCGCGGACCAACATCTCGCATGAA
AACCCAACGGGCACCATGCGCGGCAATGAGAAGAAGCGTGCTCTGATGTC
GCTTTTTACAGCCGGTCCCATAAATGTGGACAAGGATGACGAGCTGATGG
GCGAGGTTGGAGTGCCAGAAAAGCAGCCAGCAGCGTTGATCCAGGATCAG
TTGCCTCCACCGCTGCCCCCGCAAATGTCCAAGCCACTGGCCCACATTCG
GGGATCGAACGGAGGAGCTATAAAGACGCATCCAAACCGCAATTCTAATC
CGGTGAGCTCGGGAGTCTCGGCACTGTTTCCCCCCGGACCACCCAATGGA
ATGCCCAACACTAGTTATCCCACACATCCGAGGCATTCGCTATACGGTGT
GACTGCCGAGGAGATTAACCAAAAGCCGATCCAGCGAGCCCCTCTGATGG
GCGCCAATGCCAGGGTTAAAATGCCTTCACAGGAGCGCTACGGAACCAGG
CCGCATAGTAACCATCGCCTGTCGTTAAATATCACGCCCAGCGGAGATTT
TTATCAGCCCAAGACCAGTGGTCAGCAGGCCCAGCAGCAAGTAATGAACG
CCTCATCGACATCGGCGGGCTTTGGAGTAGGATCGGGATCAATGGTCGGT
GGTACGGGTCCGGCGGCCGGAGAGTTTCCAGTGCGCAAACAGCAGGTCTA
TGACGTCTTCCATCCGCCTCCACTGCCCAAAAACAGCTCCGGATCCAATA
TGTTCATGCCGCTTCATCCGACCAGGGGCAGTCACCCGCCGCCCGTTGGA
CAACCGCCGGACGTTGTGTCCCTGAAATCGCAGAATTCTATAGAGTCAAT
ACTGTCTGCTAAGAGTCCCGCTATCAGCGAATACGGGATGTACGCCAAGC
GCCATGTGCCACAGGCGGTAAGGCATGTGCCGAAGTACCCGAGTGATAGC
GAGAGCATTGGTTCCGGTGTTCACGGAGGATATGGTGGATTTCTTCAGTC
CAACCATATGCCGGGAAATAGACACACGCAGCTCTTCCCCACTTTTGGAC
CCGGTGGTCGGGGTAACCGGAGATCCAGTCCATTAACCCTACCTTCACCA
CCGCCTCAGCAGCAGTTGCAACAGCTACCTGCGGCGACGGCACCGCACGA
CAGCGTTGGAATACCCACTGATCTGGACTACCATCCGCACCATCACACGC
AGACCAACGCAATGCCACATCCACATCCCCATCCCCATGCTCCTTACTTG
GATTACGGGCACGGTCTAGGGATAGGTCCCTATATGGGGGTGGGCGGTGG
AGTCTCGGGAGTTGGCGGAGCTATCTATGAAGGCGGAACATTCCCGCGCA
AGAAAGACAATCAGCGATTAAGGATTCCATCTAATCCCAGTGTGGCTAGC
AAAAGCAGCAGTATGGTGAAGAATAGCTCTGGCAGCATCGACCATCATTA
TGTGACGAGCACGGGGCCAGTCTCTGGTGGATCCATGTCAGCCTCGTCTT
CAGATCGTGCACCTATGTCACTGATGAGCTCTAGTATTCACAACAGTTAC
GGTGCAAATATTGCAGGAGGAAATGGAACTGGATCGAGCATAGGAGTTGG
AGGAGGCGGTGGAGGAGGAAGTGGCCGCGGTTCGCCCATGCCGCAGGTCC
ATGTGGAAGTCCTTAGCCATGGAGGCGGCGGAAGTGGCAAGCGCAACTCC
AATGTGCCTGCGGATTTTCTCTGCCCCGGAGACCTTAGAAGAGTCACCAT
CGACAAGCGCGACAAGTCGCTAGGTATCACCATTCAGTGCAACAACAACG
GCGGCGGAATATTTGTGTCAACCGTCGCTGACAAAAGCACGGCGATGCGT
GCCGGTCTCCAGGTGGGCGATCAACTCTTGGAAGTATGTGGCATTAACAT
GCGGGCGGCCACGCAGGAGATTGCTGCCAATGTGCTGCGGCAGTGCGGCG
ACTCCTTTACAATGCTCGTTCAGTACAATCCGGAGAAGTTCCCTTCAATT
GAGTACGAGGGAGCGCACAATTTGGAACCAGAATCTCCCATCAATCATTC
GGGCTCCCCGACTCCGCGCAACTCTCCCCGTCCTCCTGCCCGCAACTCGC
TTTTCCCGTTGCCGATGCAGCCGCAGGCTCCTTCAACGAGACCCGGCTCA
AGGGCTCCGCTGTCGCATCAGTCGATTAAGGACCAGAGCTTCACCGATAG
CCTTGAGAACCAGTCGGATATCAGCAGCAGCCAGGACATGCCTTCATCGG
CGGCCACCACCACCACAACGACTGCCTCAGCCACGTCAACGGTGTATGAT
GAGGAACCTAAGCCATCCTTGCCGCCGCCACCTGCATCCGTTCCAGCAGA
GACTCTAAGGTATGTGACTCTGCACATGGACAAGTCAAAGAACCTGGGCA
TCAAGCTATTTGGGGGCAATAAAGTTGGCATATATGTGCATGACGTCGCG
GTGGGATCGCCTTCTGATCATGCTGGAATTCGCAAAGGCGATCAAATACT
GGAATACAATGGTGTAGATTTGAGCGGAGTCACCGCTGAGCAGGCGGCCA
ATGAGATTTCAAAGCTTACGGATACGGTCACCATGTTGGTACAGAATAAG
TTACACACCCTAAAGCAAATTAAAGACGAGCCTGGCGACTCCTTTTATAT
TCGCGTGGGGTTTGACCGGACTGGTGAGTTGAACGAGGACGATTTGCGCT
TTGTTAAGGACGAGGTGCTCTACGTGGACAATACGGTTTTTAATGGCACC
TTTGGCTTGTGGCGAGCCTGGAAGCTGGATGCCATGGGCCATCGGAAGGA
GTGCGGCATAATACCCAGTCAAATGAAGGTGGAGGAGGAACTGCGTTCGG
GTGAGGTGGTCGACTGTGATACGGGAACGGCCAGACGCGGCAGCACTTCG
GCCAGAAGATCATTTTTTCGTCGCAAGAAAAACCAGCGCAGCTCGTCCCG
CGACTCCACGGAGATTGCCAGTTTCAGCAACACACAGCTTAGCTTCTTTC
CAGACTTAGGTCTGCTCAACGATGATGGTGGAGCCCTTAGCTACCAGCGT
GTAGAGCTTTTAGATTCACCCATTCGCCGGCCCGTGCTGATTATCGGACC
GTTGTCCGAGTGTCTGATGGTTCGCCTTACAATTGACTTCTCCAACCTCT
TCAAACTGTGCGAGGTGACGGCCATGGACTGTTCGCAGGAGGCCATGGAG
GAGGGTCTAAAAGAAAACATCTTTGTGGATTATCGGCGGAGGGGCAACAA
GTTTGAATGCACCACCGTTGAGGCGATTAGCAATGCCTGCAAAAATGATC
GACGCCACTGCATCCTTGACGTTTCCATTTCCGCCGTGGAGCGTCTGCAG
CGCCTACAAATCTATCCAATTGTCCTCCTGCTGCGCTTTAAGTCTGCCAA
ACAAATCCGAGATATTCGCGACTTTGGCACCGACAAAATCTCAGCCAAGG
CGGCCAAGGAGATGTACGAGCGGGCCATGAAGCTCGAGACCGACTATAAG
CAATACATATCAGCCGTAATCCCCGGCGTCAGTATCAAGCACATGTGCAC
CCAAATTAAGGATGCCGTCGACAAGGAGCAGGACAAGCTACTTTGGGTGC
CCGTATCGAGTGGCTGAAAGCTTTCTAGACCAT
BS11161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6509-RA | 5751 | CG6509-PA | 1..5751 | 17..5767 | 28755 | 100 | Plus |
| CG6509-RB | 5751 | CG6509-PB | 1..5751 | 17..5767 | 28755 | 100 | Plus |
| CG6509-RD | 5748 | CG6509-PD | 1..5748 | 17..5767 | 28675 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6509-RA | 7133 | CG6509-RA | 482..6232 | 17..5767 | 28755 | 100 | Plus |
| CG6509-RB | 6887 | CG6509-RB | 611..6361 | 17..5767 | 28755 | 100 | Plus |
| CG6509-RD | 7259 | CG6509-RD | 611..6358 | 17..5767 | 28675 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11511609..11515675 | 4136..70 | 20335 | 100 | Minus |
| 2L | 23513712 | 2L | 11511179..11511544 | 4502..4137 | 1830 | 100 | Minus |
| 2L | 23513712 | 2L | 11510596..11510850 | 4757..4503 | 1275 | 100 | Minus |
| 2L | 23513712 | 2L | 11510024..11510262 | 5216..4978 | 1195 | 100 | Minus |
| 2L | 23513712 | 2L | 11509734..11509964 | 5447..5217 | 1155 | 100 | Minus |
| 2L | 23513712 | 2L | 11510320..11510540 | 4978..4758 | 1105 | 100 | Minus |
| 2L | 23513712 | 2L | 11509467..11509683 | 5663..5447 | 1085 | 100 | Minus |
| 2L | 23513712 | 2L | 11509300..11509406 | 5767..5661 | 535 | 100 | Minus |
| 2L | 23513712 | 2L | 11515726..11515780 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:29:00 has no hits.
BS11161.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:33 Download gff for
BS11161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-RA | 436..6185 | 17..5766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:18 Download gff for
BS11161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-RB | 611..6360 | 17..5766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:25 Download gff for
BS11161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-RA | 436..6185 | 17..5766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:28 Download gff for
BS11161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-RB | 611..6360 | 17..5766 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:28 Download gff for
BS11161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11509735..11509964 | 5217..5446 | 100 | <- | Minus |
| 2L | 11510024..11510262 | 4978..5216 | 100 | <- | Minus |
| 2L | 11510321..11510540 | 4758..4977 | 100 | <- | Minus |
| 2L | 11510596..11510850 | 4503..4757 | 100 | <- | Minus |
| 2L | 11509467..11509683 | 5447..5663 | 100 | <- | Minus |
| 2L | 11509301..11509403 | 5664..5766 | 100 | <- | Minus |
| 2L | 11511179..11511544 | 4137..4502 | 100 | <- | Minus |
| 2L | 11511609..11515673 | 72..4136 | 100 | <- | Minus |
| 2L | 11515726..11515780 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:18 Download gff for
BS11161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11509301..11509403 | 5664..5766 | 100 | <- | Minus |
| arm_2L | 11509467..11509683 | 5447..5663 | 100 | <- | Minus |
| arm_2L | 11509735..11509964 | 5217..5446 | 100 | <- | Minus |
| arm_2L | 11510024..11510262 | 4978..5216 | 100 | <- | Minus |
| arm_2L | 11510321..11510540 | 4758..4977 | 100 | <- | Minus |
| arm_2L | 11510596..11510850 | 4503..4757 | 100 | <- | Minus |
| arm_2L | 11511179..11511544 | 4137..4502 | 100 | <- | Minus |
| arm_2L | 11511609..11515673 | 72..4136 | 100 | <- | Minus |
| arm_2L | 11515726..11515780 | 17..71 | 100 | | Minus |
BS11161.3prime Sequence
881 bp (840 high quality bases) assembled on 2006-04-19
> BS11161.3prime
ATGGTCTAGAAAGCTTTCAGCCACTCGATACGGGCACCCAAAGTAGCTTG
TCCTGCTCCTTGTCGACGGCATCCTTAATTTGGGTGCACATGTGCTTGAT
ACTGACGCCGGGGATTACGGCTGATATGTATTGCTTATAGTCGGTCTCGA
GCTTCATGGCCCGCTCGTACATCTCCTTGGCCGCCTTGGCTGAGATTTTG
TCGGTGCCAAAGTCGCGAATATCTCGGATTTGTTTGGCAGACTTAAAGCG
CAGCAGGAGGACAATTGGATAGATTTGTAGGCGCTGCAGACGCTCCACGG
CGGAAATGGAAACGTCAAGGATGCAGTGGCGTCGATCATTTTTGCAGGCA
TTGCTAATCGCCTCAACGGTGGTGCATTCAAACTTGTTGCCCCTCCGCCG
ATAATCCACAAAGATGTTTTCTTTTAGACCCTCCTCCATGGCCTCCTGCG
AACAGTCCATGGCCGTCACCTCGCACAGTTTGAAGAGGTTGGAGAAGTCA
ATTGTAAGGCGAACCATCAGACACTCGGACAACGGTCCGATAATCAGCAC
GGGCCGGCGAATGGGTGAATCTAAAAGCTCTACACGCTGGTAGCTAAGGG
CTCCACCATCATCGTTGAGCAGACCTAAGTCTGGAAAGAAGCTAAGCTGT
GTGTTGCTGAAACTGGCAATCTCCGTGGAGTCGCGGGACGAGCTGCGCTG
GTTTTTCTTGCGACGAANAAATGATCTTCTGGCCGAAGTGCTGCCGCGTC
TGGCCGTTCCCGTATCACAGTCGACCACCTCACCCGAACGCAGTTCCTCC
TCCACCTTCATTTGACTGGGTATTATGCCGCACTCCTTCCGATGGCCCAT
GGCATCCAGCTTCCAGGCTCGCCACAAGCCA
BS11161.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6509-PB | 5751 | CG6509-RB | 4887..5751 | 881..17 | 4306 | 99.8 | Minus |
| CG6509-PA | 5751 | CG6509-RA | 4887..5751 | 881..17 | 4306 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6509-RD | 7259 | CG6509-RD | 5494..6358 | 881..17 | 4314 | 99.9 | Minus |
| CG6509-RC | 7320 | CG6509-RC | 5555..6419 | 881..17 | 4314 | 99.9 | Minus |
| CG6509-RA | 7133 | CG6509-RA | 5368..6232 | 881..17 | 4314 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11510024..11510262 | 568..806 | 1184 | 99.6 | Plus |
| 2L | 23513712 | 2L | 11509734..11509964 | 337..567 | 1155 | 100 | Plus |
| 2L | 23513712 | 2L | 11509467..11509683 | 121..337 | 1085 | 100 | Plus |
| 2L | 23513712 | 2L | 11509300..11509406 | 17..123 | 535 | 100 | Plus |
| 2L | 23513712 | 2L | 11510320..11510395 | 806..881 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 18:28:44 has no hits.
BS11161.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:00:33 Download gff for
BS11161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-PA | 4888..5751 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:28:23 Download gff for
BS11161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-PA | 4888..5751 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:39:57 Download gff for
BS11161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-RA | 5369..6232 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:44:20 Download gff for
BS11161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-RA | 5369..6232 | 17..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:44:20 Download gff for
BS11161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11509300..11509403 | 17..120 | 100 | <- | Plus |
| 2L | 11509467..11509683 | 121..337 | 100 | <- | Plus |
| 2L | 11509735..11509964 | 338..567 | 100 | <- | Plus |
| 2L | 11510024..11510262 | 568..806 | 99 | <- | Plus |
| 2L | 11510321..11510394 | 807..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:39:57 Download gff for
BS11161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11510321..11510394 | 807..880 | 100 | | Plus |
| arm_2L | 11509300..11509403 | 17..120 | 100 | <- | Plus |
| arm_2L | 11509467..11509683 | 121..337 | 100 | <- | Plus |
| arm_2L | 11509735..11509964 | 338..567 | 100 | <- | Plus |
| arm_2L | 11510024..11510262 | 568..806 | 99 | <- | Plus |
BS11161.5prime Sequence
823 bp (821 high quality bases) assembled on 2006-04-19
> BS11161.5prime
GAAGTTATCAGTCGACATGGCGAAGATGGCATCTGGAGATCTATCGCTGA
CTAGTACGAGTAGCCAGGAAGAAGAGAGCTCGGAGTATGTGGGCTATGAT
AATACCCTACGACCGCCGTCCAATTCCAGCGGCAGCACCACAGCTGCCAA
CATGTCCAACAACAACGGGCCCTCGAAGGGCGTCAGTAGCGGTGTGGGCG
TGTCGGGCATTTCTGGTGGAAACGGCGCAAATTACGATATACTGCAGGCG
CAGTACAAGTCCGCACTTTTGGAGCTAAATACCCTACGCCACCAGCATGC
GAACACCAAGAGGCGATGCGATGAGTTAGCCACCGAGTTAACTCTGTACC
AGGAGCATTACGTGGCCGATCGTAACAAGTTCACCGATATGGTGGAGGAG
AGCGCCCGTTTCAAGCGTCTGCTATTGGAGACCCAAAACCAACAGAGCCA
GCAGGCCCAGAATGGAAATAGCCAAGTGCCGCCAGTCGGCAGTGGGAATC
CTTATTATTTTGGCAAGACGCAGGGATGCGATGGAAGCTGCAGTGAGAAG
CTGGCCGAACTGAAGAAAGAGCGAAATATGGTCGCCGTGGAGAGGGAGAA
GTACAAGAAGTCCTACATCGAGCTTGAAAAGGATCGCAACTACTACCGGG
AGCGAGGCGATGAAAATCAGAAACTGAAGGTTCTTCTCTCCCAGGAGAGT
AAGAATGTGCTTTCCCTTACCGAGGAGCTTAATCAACTGCTCTCAGAGAA
GGACAACGTGCTGCAGGAGCACCAGAAGATGTCCGACGATCTGGTTCTGG
CCAACAAAGAAATTGAGAGGCTC
BS11161.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6509-PB | 5751 | CG6509-RB | 1..807 | 17..823 | 4035 | 100 | Plus |
| CG6509-PA | 5751 | CG6509-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6509-RC | 7320 | CG6509-RC | 546..1352 | 17..823 | 4035 | 100 | Plus |
| CG6509-RA | 7133 | CG6509-RA | 482..1288 | 17..823 | 4035 | 100 | Plus |
| CG6509-RB | 6887 | CG6509-RB | 611..1417 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11514922..11515675 | 823..70 | 3770 | 100 | Minus |
| 2L | 23513712 | 2L | 11515726..11515780 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:20:36 has no hits.
BS11161.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:00:34 Download gff for
BS11161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:28:24 Download gff for
BS11161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:43:07 Download gff for
BS11161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-RB | 608..1417 | 11..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:14 Download gff for
BS11161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6509-RB | 608..1417 | 11..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:14 Download gff for
BS11161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11514922..11515673 | 72..823 | 100 | <- | Minus |
| 2L | 11515726..11515783 | 11..71 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:43:07 Download gff for
BS11161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11514922..11515673 | 72..823 | 100 | <- | Minus |
| arm_2L | 11515726..11515783 | 11..71 | 95 | | Minus |
BS11161.pep Sequence
Translation from 16 to 5766
> BS11161.pep
MAKMASGDLSLTSTSSQEEESSEYVGYDNTLRPPSNSSGSTTAANMSNNN
GPSKGVSSGVGVSGISGGNGANYDILQAQYKSALLELNTLRHQHANTKRR
CDELATELTLYQEHYVADRNKFTDMVEESARFKRLLLETQNQQSQQAQNG
NSQVPPVGSGNPYYFGKTQGCDGSCSEKLAELKKERNMVAVEREKYKKSY
IELEKDRNYYRERGDENQKLKVLLSQESKNVLSLTEELNQLLSEKDNVLQ
EHQKMSDDLVLANKEIERLKKDEQLARAEIKVLQLANADLKKRDLLKSRD
SSWSKEFPSGKELENSKELEKLRKSLEKALSEVERSSQDAEEAKRVRDWA
ISQREKIVQERDSVKTLCDKMRHERDKAISDSLMAIRDSEKIKKQKDEAQ
KKIDLLKEQMEQQERQNLDSNASGSRRSFRPSSYEGEDLLEVELSGYEHT
SDLGIILDDSNKRKLVCGVTSSSPACGKLKINDVICKVNNLDCQSLSKRM
VLDEIRACAPRSLLLVSRTRHSKRHAYSVQLKTRDRDCPHGLQLDMGVFI
AKIEQNSLAFYEPELDVGDRVLSINNKSMDSVQSIEEVMQLMNDPRSDGL
NLFALKYVQDQLPPGMTTSSAQTDSIDSMQHVSSAGGGGGSGPSSATKHP
SRFAEFFFRKLKFSKPGTPEDNFEQEHDDAIAALDSVLSENSSEKSKENL
FNRKKRTKKEKEASKSMGTWPRTNISHENPTGTMRGNEKKRALMSLFTAG
PINVDKDDELMGEVGVPEKQPAALIQDQLPPPLPPQMSKPLAHIRGSNGG
AIKTHPNRNSNPVSSGVSALFPPGPPNGMPNTSYPTHPRHSLYGVTAEEI
NQKPIQRAPLMGANARVKMPSQERYGTRPHSNHRLSLNITPSGDFYQPKT
SGQQAQQQVMNASSTSAGFGVGSGSMVGGTGPAAGEFPVRKQQVYDVFHP
PPLPKNSSGSNMFMPLHPTRGSHPPPVGQPPDVVSLKSQNSIESILSAKS
PAISEYGMYAKRHVPQAVRHVPKYPSDSESIGSGVHGGYGGFLQSNHMPG
NRHTQLFPTFGPGGRGNRRSSPLTLPSPPPQQQLQQLPAATAPHDSVGIP
TDLDYHPHHHTQTNAMPHPHPHPHAPYLDYGHGLGIGPYMGVGGGVSGVG
GAIYEGGTFPRKKDNQRLRIPSNPSVASKSSSMVKNSSGSIDHHYVTSTG
PVSGGSMSASSSDRAPMSLMSSSIHNSYGANIAGGNGTGSSIGVGGGGGG
GSGRGSPMPQVHVEVLSHGGGGSGKRNSNVPADFLCPGDLRRVTIDKRDK
SLGITIQCNNNGGGIFVSTVADKSTAMRAGLQVGDQLLEVCGINMRAATQ
EIAANVLRQCGDSFTMLVQYNPEKFPSIEYEGAHNLEPESPINHSGSPTP
RNSPRPPARNSLFPLPMQPQAPSTRPGSRAPLSHQSIKDQSFTDSLENQS
DISSSQDMPSSAATTTTTTASATSTVYDEEPKPSLPPPPASVPAETLRYV
TLHMDKSKNLGIKLFGGNKVGIYVHDVAVGSPSDHAGIRKGDQILEYNGV
DLSGVTAEQAANEISKLTDTVTMLVQNKLHTLKQIKDEPGDSFYIRVGFD
RTGELNEDDLRFVKDEVLYVDNTVFNGTFGLWRAWKLDAMGHRKECGIIP
SQMKVEEELRSGEVVDCDTGTARRGSTSARRSFFRRKKNQRSSSRDSTEI
ASFSNTQLSFFPDLGLLNDDGGALSYQRVELLDSPIRRPVLIIGPLSECL
MVRLTIDFSNLFKLCEVTAMDCSQEAMEEGLKENIFVDYRRRGNKFECTT
VEAISNACKNDRRHCILDVSISAVERLQRLQIYPIVLLLRFKSAKQIRDI
RDFGTDKISAKAAKEMYERAMKLETDYKQYISAVIPGVSIKHMCTQIKDA
VDKEQDKLLWVPVSSG*
BS11161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6509-PA | 1916 | CG6509-PA | 1..1916 | 1..1916 | 9941 | 100 | Plus |
| CG6509-PB | 1916 | CG6509-PB | 1..1916 | 1..1916 | 9941 | 100 | Plus |
| CG6509-PD | 1915 | CG6509-PD | 1..1915 | 1..1916 | 9924 | 99.9 | Plus |
| CG6509-PC | 1497 | CG6509-PC | 1..1496 | 1..1496 | 7778 | 99.9 | Plus |
| pyd-PL | 1285 | CG43140-PL | 5..911 | 974..1914 | 411 | 22.2 | Plus |
