Clone Sequence Records
BS11166.5prime Sequence
225 bp (224 high quality bases) assembled on 2006-04-19
> BS11166.5prime
GAAGTTATCAGTCGACATGCGTCTAACTAACGTTTTGTTCAAAAAGGTGA
AGAGCAAGCGCATCATGGTCGTACTGGAAAGTGTGGTCAGTGGACATCAG
TTTAATGCTTTTCGCGATCGCTTGGCCGACAAATTGGAGATAATACGCTT
CGATCCGTACATTCAACAGGAAAGCCTTTATCGTGAACGCAAGAAAATCC
GCAGCGCCTAAAAGCTTTCTAGACC
BS11166.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3712-PA | 195 | mRpL33-RA | 1..195 | 17..211 | 975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL33-RA | 349 | CG3712-RA | 101..295 | 17..211 | 975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4321931..4322034 | 161..58 | 520 | 100 | Minus |
X | 23542271 | X | 4321818..4321867 | 211..162 | 250 | 100 | Minus |
X | 23542271 | X | 4322090..4322131 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:39:49 has no hits.
BS11166.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:00:42 Download gff for
BS11166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3712-PA | 1..195 | 17..211 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:28:35 Download gff for
BS11166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3712-PA | 1..195 | 17..211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:12:12 Download gff for
BS11166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 88..295 | 5..211 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:10 Download gff for
BS11166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 88..295 | 5..211 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:10 Download gff for
BS11166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4321818..4321867 | 162..211 | 100 | <- | Minus |
X | 4321931..4322034 | 58..161 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:12:12 Download gff for
BS11166.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4215851..4215900 | 162..211 | 100 | <- | Minus |
arm_X | 4215964..4216067 | 58..161 | 100 | <- | Minus |
BS11166.3prime Sequence
225 bp (224 high quality bases) assembled on 2006-04-19
> BS11166.3prime
ATGGTCTAGAAAGCTTTTAGGCGCTGCGGATTTTCTTGCGTTCACGATAA
AGGCTTTCCTGTTGAATGTACGGATCGAAGCGTATTATCTCCAATTTGTC
GGCCAAGCGATCGCGAAAAGCATTAAACTGATGTCCACTGACCACACTTT
CCAGTACGACCATGATGCGCTTGCTCTTCACCTTTTTGAACAAAACGTTA
GTTAGACGCATGTCGACTGATAACT
BS11166.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3712-PA | 195 | mRpL33-RA | 1..195 | 211..17 | 975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL33-RA | 349 | CG3712-RA | 101..295 | 211..17 | 975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4321931..4322034 | 67..170 | 520 | 100 | Plus |
X | 23542271 | X | 4321818..4321867 | 17..66 | 250 | 100 | Plus |
X | 23542271 | X | 4322090..4322131 | 170..211 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:47:37 has no hits.
BS11166.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:00:41 Download gff for
BS11166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3712-PA | 1..195 | 17..211 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:28:34 Download gff for
BS11166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3712-PA | 1..195 | 17..211 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:22:30 Download gff for
BS11166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 88..295 | 17..223 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:16 Download gff for
BS11166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 88..295 | 17..223 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:16 Download gff for
BS11166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4321818..4321867 | 17..66 | 100 | <- | Plus |
X | 4321931..4322034 | 67..170 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:22:30 Download gff for
BS11166.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4215851..4215900 | 17..66 | 100 | <- | Plus |
arm_X | 4215964..4216067 | 67..170 | 100 | <- | Plus |
BS11166.complete Sequence
227 bp assembled on 2006-11-01
GenBank Submission: FJ636774
> BS11166.complete
GAAGTTATCAGTCGACATGCGTCTAACTAACGTTTTGTTCAAAAAGGTGA
AGAGCAAGCGCATCATGGTCGTACTGGAAAGTGTGGTCAGTGGACATCAG
TTTAATGCTTTTCGCGATCGCTTGGCCGACAAATTGGAGATAATACGCTT
CGATCCGTACATTCAACAGGAAAGCCTTTATCGTGAACGCAAGAAAATCC
GCAGCGCCTAAAAGCTTTCTAGACCAT
BS11166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL33-RA | 195 | CG3712-PA | 1..195 | 17..211 | 975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL33-RA | 349 | CG3712-RA | 101..295 | 17..211 | 975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4321931..4322034 | 161..58 | 520 | 100 | Minus |
X | 23542271 | X | 4321818..4321867 | 211..162 | 250 | 100 | Minus |
X | 23542271 | X | 4322090..4322131 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:27:49 has no hits.
BS11166.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:01 Download gff for
BS11166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 1..195 | 17..211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:27 Download gff for
BS11166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 58..265 | 5..211 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:46:27 Download gff for
BS11166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 101..293 | 17..209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:01 Download gff for
BS11166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 58..265 | 5..211 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:56 Download gff for
BS11166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 101..293 | 17..209 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:56 Download gff for
BS11166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4321820..4321867 | 162..209 | 100 | <- | Minus |
X | 4321931..4322034 | 58..161 | 100 | <- | Minus |
X | 4322091..4322131 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:46:27 Download gff for
BS11166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4215853..4215900 | 162..209 | 100 | <- | Minus |
arm_X | 4215964..4216067 | 58..161 | 100 | <- | Minus |
arm_X | 4216124..4216164 | 17..57 | 100 | | Minus |
BS11166.pep Sequence
Translation from 16 to 210
> BS11166.pep
MRLTNVLFKKVKSKRIMVVLESVVSGHQFNAFRDRLADKLEIIRFDPYIQ
QESLYRERKKIRSA*
BS11166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL33-PA | 64 | CG3712-PA | 1..64 | 1..64 | 314 | 100 | Plus |