Clone Sequence Records
BS11173.complete Sequence
248 bp assembled on 2006-11-01
GenBank Submission: FJ636775
> BS11173.complete
GAAGTTATCAGTCGACATGGATTTAAACATGAAACCGTCTCTGGCTGCCG
ACGAAATGTTTTCCGAAGGCCCCGGCTACATGGAAATGGACGAGTCCGGC
GGAGCCACAGGAATGATGATGGACCACCTGCCCTCCAACGATAAGCACGT
CCACGCTGACTTCTACAATGATTTTGATGATCTGTTCGATGAAGACAACT
GGGCCAAGATGAAAACCGATGGGAAACAGTAGAAGCTTTCTAGACCAT
BS11173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17059-RA | 216 | CG17059-PA | 1..216 | 17..232 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17059-RA | 423 | CG17059-RA | 96..312 | 17..233 | 1085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13220764..13220904 | 93..233 | 705 | 100 | Plus |
2R | 25286936 | 2R | 13220378..13220455 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:59:27 has no hits.
BS11173.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:15 Download gff for
BS11173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-RA | 1..216 | 17..232 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:08 Download gff for
BS11173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-RA | 52..274 | 10..236 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:07 Download gff for
BS11173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-RA | 96..311 | 17..232 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:16 Download gff for
BS11173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-RA | 52..274 | 10..236 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:20 Download gff for
BS11173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-RA | 96..311 | 17..232 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:20 Download gff for
BS11173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13220378..13220455 | 17..94 | 100 | -> | Plus |
2R | 13220766..13220903 | 95..232 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:07 Download gff for
BS11173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9107883..9107960 | 17..94 | 100 | -> | Plus |
arm_2R | 9108271..9108408 | 95..232 | 100 | | Plus |
BS11173.5prime Sequence
246 bp (245 high quality bases) assembled on 2006-04-19
> BS11173.5prime
GAAGTTATCAGTCGACATGGATTTAAACATGAAACCGTCTCTGGCTGCCG
ACGAAATGTTTTCCGAAGGCCCCGGCTACATGGAAATGGACGAGTCCGGC
GGAGCCACAGGAATGATGATGGACCACCTGCCCTCCAACGATAAGCACGT
CCACGCTGACTTCTACAATGATTTTGATGATCTGTTCGATGAAGACAACT
GGGCCAAGATGAAAACCGATGGGAAACAGTAGAAGCTTTCTAGACC
BS11173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17059-PA | 216 | CG17059-RA | 1..216 | 17..232 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17059-RA | 423 | CG17059-RA | 96..312 | 17..233 | 1085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13220764..13220904 | 93..233 | 705 | 100 | Plus |
2R | 25286936 | 2R | 13220378..13220455 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:58:31 has no hits.
BS11173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:00:57 Download gff for
BS11173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-PA | 1..216 | 17..232 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:28:56 Download gff for
BS11173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-PA | 1..216 | 17..232 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:45 Download gff for
BS11173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-RA | 93..315 | 10..236 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:36:56 Download gff for
BS11173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-RA | 93..315 | 10..236 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:36:56 Download gff for
BS11173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13220375..13220455 | 10..94 | 95 | -> | Plus |
2R | 13220766..13220907 | 95..236 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:45 Download gff for
BS11173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9107880..9107960 | 10..94 | 95 | -> | Plus |
arm_2R | 9108271..9108412 | 95..236 | 99 | | Plus |
BS11173.3prime Sequence
246 bp (245 high quality bases) assembled on 2006-04-19
> BS11173.3prime
ATGGTCTAGAAAGCTTCTACTGTTTCCCATCGGTTTTCATCTTGGCCCAG
TTGTCTTCATCGAACAGATCATCAAAATCATTGTAGAAGTCAGCGTGGAC
GTGCTTATCGTTGGAGGGCAGGTGGTCCATCATCATTCCTGTGGCTCCGC
CGGACTCGTCCATTTCCATGTAGCCGGGGCCTTCGGAAAACATTTCGTCG
GCAGCCAGAGACGGTTTCATGTTTAAATCCATGTCGACTGATAACT
BS11173.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17059-PA | 216 | CG17059-RA | 1..216 | 232..17 | 1080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17059-RA | 423 | CG17059-RA | 96..312 | 232..16 | 1085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13220764..13220904 | 156..16 | 705 | 100 | Minus |
2R | 25286936 | 2R | 13220378..13220455 | 232..155 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:48:41 has no hits.
BS11173.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:00:56 Download gff for
BS11173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-PA | 1..216 | 17..232 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:28:54 Download gff for
BS11173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-PA | 1..216 | 17..232 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:36:27 Download gff for
BS11173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-RA | 93..315 | 13..239 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:29 Download gff for
BS11173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17059-RA | 93..315 | 13..239 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:29 Download gff for
BS11173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13220375..13220455 | 155..239 | 95 | -> | Minus |
2R | 13220766..13220907 | 13..154 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:36:27 Download gff for
BS11173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9107880..9107960 | 155..239 | 95 | -> | Minus |
arm_2R | 9108271..9108412 | 13..154 | 99 | | Minus |
BS11173.pep Sequence
Translation from 16 to 231
> BS11173.pep
MDLNMKPSLAADEMFSEGPGYMEMDESGGATGMMMDHLPSNDKHVHADFY
NDFDDLFDEDNWAKMKTDGKQ*
BS11173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17059-PA | 71 | CG17059-PA | 1..71 | 1..71 | 392 | 100 | Plus |