Clone BS11173 Report

Search the DGRC for BS11173

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:111
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG17059-RA
Protein status:BS11173.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11173.complete Sequence

248 bp assembled on 2006-11-01

GenBank Submission: FJ636775

> BS11173.complete
GAAGTTATCAGTCGACATGGATTTAAACATGAAACCGTCTCTGGCTGCCG
ACGAAATGTTTTCCGAAGGCCCCGGCTACATGGAAATGGACGAGTCCGGC
GGAGCCACAGGAATGATGATGGACCACCTGCCCTCCAACGATAAGCACGT
CCACGCTGACTTCTACAATGATTTTGATGATCTGTTCGATGAAGACAACT
GGGCCAAGATGAAAACCGATGGGAAACAGTAGAAGCTTTCTAGACCAT

BS11173.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17059-RA 216 CG17059-PA 1..216 17..232 1080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17059-RA 423 CG17059-RA 96..312 17..233 1085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13220764..13220904 93..233 705 100 Plus
2R 25286936 2R 13220378..13220455 17..94 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:59:27 has no hits.

BS11173.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:15 Download gff for BS11173.complete
Subject Subject Range Query Range Percent Splice Strand
CG17059-RA 1..216 17..232 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:08 Download gff for BS11173.complete
Subject Subject Range Query Range Percent Splice Strand
CG17059-RA 52..274 10..236 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:07 Download gff for BS11173.complete
Subject Subject Range Query Range Percent Splice Strand
CG17059-RA 96..311 17..232 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:16 Download gff for BS11173.complete
Subject Subject Range Query Range Percent Splice Strand
CG17059-RA 52..274 10..236 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:20 Download gff for BS11173.complete
Subject Subject Range Query Range Percent Splice Strand
CG17059-RA 96..311 17..232 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:20 Download gff for BS11173.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13220378..13220455 17..94 100 -> Plus
2R 13220766..13220903 95..232 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:07 Download gff for BS11173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9107883..9107960 17..94 100 -> Plus
arm_2R 9108271..9108408 95..232 100   Plus

BS11173.5prime Sequence

246 bp (245 high quality bases) assembled on 2006-04-19

> BS11173.5prime
GAAGTTATCAGTCGACATGGATTTAAACATGAAACCGTCTCTGGCTGCCG
ACGAAATGTTTTCCGAAGGCCCCGGCTACATGGAAATGGACGAGTCCGGC
GGAGCCACAGGAATGATGATGGACCACCTGCCCTCCAACGATAAGCACGT
CCACGCTGACTTCTACAATGATTTTGATGATCTGTTCGATGAAGACAACT
GGGCCAAGATGAAAACCGATGGGAAACAGTAGAAGCTTTCTAGACC

BS11173.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17059-PA 216 CG17059-RA 1..216 17..232 1080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17059-RA 423 CG17059-RA 96..312 17..233 1085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13220764..13220904 93..233 705 100 Plus
2R 25286936 2R 13220378..13220455 17..94 390 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:58:31 has no hits.

BS11173.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:00:57 Download gff for BS11173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17059-PA 1..216 17..232 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:28:56 Download gff for BS11173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17059-PA 1..216 17..232 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:45 Download gff for BS11173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17059-RA 93..315 10..236 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:36:56 Download gff for BS11173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17059-RA 93..315 10..236 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:36:56 Download gff for BS11173.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13220375..13220455 10..94 95 -> Plus
2R 13220766..13220907 95..236 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:45 Download gff for BS11173.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9107880..9107960 10..94 95 -> Plus
arm_2R 9108271..9108412 95..236 99   Plus

BS11173.3prime Sequence

246 bp (245 high quality bases) assembled on 2006-04-19

> BS11173.3prime
ATGGTCTAGAAAGCTTCTACTGTTTCCCATCGGTTTTCATCTTGGCCCAG
TTGTCTTCATCGAACAGATCATCAAAATCATTGTAGAAGTCAGCGTGGAC
GTGCTTATCGTTGGAGGGCAGGTGGTCCATCATCATTCCTGTGGCTCCGC
CGGACTCGTCCATTTCCATGTAGCCGGGGCCTTCGGAAAACATTTCGTCG
GCAGCCAGAGACGGTTTCATGTTTAAATCCATGTCGACTGATAACT

BS11173.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17059-PA 216 CG17059-RA 1..216 232..17 1080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17059-RA 423 CG17059-RA 96..312 232..16 1085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13220764..13220904 156..16 705 100 Minus
2R 25286936 2R 13220378..13220455 232..155 390 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:48:41 has no hits.

BS11173.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:00:56 Download gff for BS11173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17059-PA 1..216 17..232 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:28:54 Download gff for BS11173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17059-PA 1..216 17..232 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:36:27 Download gff for BS11173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17059-RA 93..315 13..239 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:29 Download gff for BS11173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17059-RA 93..315 13..239 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:29 Download gff for BS11173.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13220375..13220455 155..239 95 -> Minus
2R 13220766..13220907 13..154 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:36:27 Download gff for BS11173.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9107880..9107960 155..239 95 -> Minus
arm_2R 9108271..9108412 13..154 99   Minus

BS11173.pep Sequence

Translation from 16 to 231

> BS11173.pep
MDLNMKPSLAADEMFSEGPGYMEMDESGGATGMMMDHLPSNDKHVHADFY
NDFDDLFDEDNWAKMKTDGKQ*

BS11173.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17059-PA 71 CG17059-PA 1..71 1..71 392 100 Plus