Clone Sequence Records
BS11178.complete Sequence
239 bp assembled on 2006-11-01
GenBank Submission: FJ636777
> BS11178.complete
GAAGTTATCAGTCGACATGTTCCAAAACAGCGCTGCCCGCCTCCTGGTCC
CCGCTATGCGTAGCGCCATGCAGAGCCGTTGCCAGTCGGTCGTCTCTGGA
CCTCCGACCCAGCGCATCTCCACCGCCGAGAAGGTGATCCTCGGCGGCGG
CATGTGCGCTGCATCCTTGTTCATTCCCGCCTGGGTGCTCTACCACATCC
GGGACTACAAGGGCGACAAGTAAAAGCTTTCTAGACCAT
BS11178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVIII-RA | 207 | CG7181-PA | 1..207 | 17..223 | 1035 | 100 | Plus |
| CoVIII-RB | 207 | CG7181-PB | 1..207 | 17..223 | 1035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVIII-RA | 406 | CG7181-RA | 94..300 | 17..223 | 1035 | 100 | Plus |
| CoVIII-RB | 513 | CG7181-RB | 94..300 | 17..223 | 1035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21539243..21539354 | 128..17 | 560 | 100 | Minus |
| 3L | 28110227 | 3L | 21539072..21539167 | 223..128 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:38:24 has no hits.
BS11178.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:17 Download gff for
BS11178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7181-RA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:10 Download gff for
BS11178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7181-RA | 88..303 | 11..228 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:37 Download gff for
BS11178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIII-RB | 99..298 | 22..221 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:17 Download gff for
BS11178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7181-RA | 88..303 | 11..228 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:23 Download gff for
BS11178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIII-RB | 99..298 | 22..221 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:23 Download gff for
BS11178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21539074..21539167 | 128..221 | 100 | <- | Minus |
| 3L | 21539244..21539349 | 22..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:37 Download gff for
BS11178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21532174..21532267 | 128..221 | 100 | <- | Minus |
| arm_3L | 21532344..21532449 | 22..127 | 100 | | Minus |
BS11178.5prime Sequence
237 bp (236 high quality bases) assembled on 2006-04-19
> BS11178.5prime
GAAGTTATCAGTCGACATGTTCCAAAACAGCGCTGCCCGCCTCCTGGTCC
CCGCTATGCGTAGCGCCATGCAGAGCCGTTGCCAGTCGGTCGTCTCTGGA
CCTCCGACCCAGCGCATCTCCACCGCCGAGAAGGTGATCCTCGGCGGCGG
CATGTGCGCTGCATCCTTGTTCATTCCCGCCTGGGTGCTCTACCACATCC
GGGACTACAAGGGCGACAAGTAAAAGCTTTCTAGACC
BS11178.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7181-PA | 207 | CG7181-RA | 1..207 | 17..223 | 1035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVIII-RA | 406 | CG7181-RA | 94..300 | 17..223 | 1035 | 100 | Plus |
| CoVIII-RB | 513 | CG7181-RB | 94..300 | 17..223 | 1035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21539243..21539354 | 128..17 | 560 | 100 | Minus |
| 3L | 28110227 | 3L | 21539072..21539167 | 223..128 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:28:58 has no hits.
BS11178.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:07 Download gff for
BS11178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7181-PA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:07 Download gff for
BS11178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7181-PA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:44:18 Download gff for
BS11178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIII-RB | 88..303 | 11..228 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:28 Download gff for
BS11178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIII-RB | 88..303 | 11..228 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:28 Download gff for
BS11178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21539069..21539167 | 128..228 | 97 | <- | Minus |
| 3L | 21539244..21539360 | 11..127 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:44:18 Download gff for
BS11178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21532169..21532267 | 128..228 | 97 | <- | Minus |
| arm_3L | 21532344..21532460 | 11..127 | 97 | | Minus |
BS11178.3prime Sequence
237 bp (236 high quality bases) assembled on 2006-04-19
> BS11178.3prime
ATGGTCTAGAAAGCTTTTACTTGTCGCCCTTGTAGTCCCGGATGTGGTAG
AGCACCCAGGCGGGAATGAACAAGGATGCAGCGCACATGCCGCCGCCGAG
GATCACCTTCTCGGCGGTGGAGATGCGCTGGGTCGGAGGTCCAGAGACGA
CCGACTGGCAACGGCTCTGCATGGCGCTACGCATAGCGGGGACCAGGAGG
CGGGCAGCGCTGTTTTGGAACATGTCGACTGATAACT
BS11178.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7181-PA | 207 | CG7181-RA | 1..207 | 223..17 | 1035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVIII-RA | 406 | CG7181-RA | 94..300 | 223..17 | 1035 | 100 | Minus |
| CoVIII-RB | 513 | CG7181-RB | 94..300 | 223..17 | 1035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21539243..21539354 | 112..223 | 560 | 100 | Plus |
| 3L | 28110227 | 3L | 21539072..21539167 | 17..112 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:44:34 has no hits.
BS11178.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:06 Download gff for
BS11178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7181-PA | 1..207 | 17..223 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:06 Download gff for
BS11178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7181-PA | 1..207 | 17..223 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:52 Download gff for
BS11178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIII-RB | 88..303 | 12..229 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:58:54 Download gff for
BS11178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIII-RB | 88..303 | 12..229 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:58:54 Download gff for
BS11178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21539069..21539167 | 12..112 | 97 | <- | Plus |
| 3L | 21539244..21539360 | 113..229 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:52 Download gff for
BS11178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21532169..21532267 | 12..112 | 97 | <- | Plus |
| arm_3L | 21532344..21532460 | 113..229 | 97 | | Plus |
BS11178.pep Sequence
Translation from 16 to 222
> BS11178.pep
MFQNSAARLLVPAMRSAMQSRCQSVVSGPPTQRISTAEKVILGGGMCAAS
LFIPAWVLYHIRDYKGDK*
BS11178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVIII-PA | 68 | CG7181-PA | 1..68 | 1..68 | 350 | 100 | Plus |
| CoVIII-PB | 68 | CG7181-PB | 1..68 | 1..68 | 350 | 100 | Plus |
