Clone Sequence Records
BS11179.3prime Sequence
315 bp (314 high quality bases) assembled on 2006-04-19
> BS11179.3prime
ATGGTCTAGAAAGCTTCTAGGACAGGCGAACGCTCACTCCACCGCCGCAC
TCGCCCTTGGACTTCTGCTCGAATGGATCGTCGGCATGCTGGCAGTTGTA
GTTGGCCATGACGCACGGGCTGCCAAAGGTGAGGAGGCGCTCCTTGCTGC
TGTTTTTGGCCTTGGCACAAACGGGCTCGTAGACTTCACCGCAGTTGTGC
TGGCAACTGTTGGTGGCCGGCTTCTTGGTGTCCTTGGCCGGAGGAGCCAG
GACGAATGCCAGCAAGCACAGTGCTAGAAAAGCAAACAGAGCGAAACGCA
TGTCGACTGATAACT
BS11179.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-PA | 285 | CG8369-RA | 1..285 | 301..17 | 1400 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-RA | 431 | CG8369-RA | 91..378 | 301..14 | 1425 | 99.7 | Minus |
CG8369-RC | 774 | CG8369-RC | 459..721 | 276..14 | 1300 | 99.6 | Minus |
CG8369-RB | 479 | CG8369-RB | 166..426 | 274..14 | 1290 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8822466..8822666 | 276..76 | 990 | 99.5 | Minus |
3R | 32079331 | 3R | 8822724..8822785 | 75..14 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:35:02 has no hits.
BS11179.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:08 Download gff for
BS11179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-PA | 1..285 | 17..301 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:09 Download gff for
BS11179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-PA | 1..285 | 17..301 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:56:34 Download gff for
BS11179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 78..378 | 14..315 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:27:50 Download gff for
BS11179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 78..378 | 14..315 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:27:50 Download gff for
BS11179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8822469..8822666 | 76..273 | 99 | -> | Minus |
3R | 8822724..8822785 | 14..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:56:34 Download gff for
BS11179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4648191..4648388 | 76..273 | 99 | -> | Minus |
arm_3R | 4648446..4648507 | 14..75 | 100 | | Minus |
BS11179.5prime Sequence
315 bp (314 high quality bases) assembled on 2006-04-19
> BS11179.5prime
GAAGTTATCAGTCGACATGCGTTTCGCTCTGTTTGCTTTTCTAGCACTGT
GCTTGCTGGCATTCGTCCTGGCTACTCCGGCCAAGGACACCAAGAAGCCG
GCCACCAACAGTTGCCAGCACAACTGCGGTGAAGTCTACGAGCCCGTTTG
TGCCAAGGCCAAAAACAGCAGCAAGGAGCGCCTCCTCACCTTTGGCAGCC
CGTGCGTCATGGCCAACTACAACTGCCAGCATGCCGACGATCCATTCGAG
CAGAAGTCCAAGGGCGAGTGCGGCGGTGGAGTGAGCGTTCGCCTGTCCTA
GAAGCTTTCTAGACC
BS11179.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-PA | 285 | CG8369-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-RA | 431 | CG8369-RA | 91..378 | 17..304 | 1440 | 100 | Plus |
CG8369-RC | 774 | CG8369-RC | 459..721 | 42..304 | 1315 | 100 | Plus |
CG8369-RB | 479 | CG8369-RB | 166..426 | 44..304 | 1305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8822466..8822666 | 42..242 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 8822724..8822785 | 243..304 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:05:31 has no hits.
BS11179.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:09 Download gff for
BS11179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-PA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:10 Download gff for
BS11179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-PA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:55:15 Download gff for
BS11179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 79..378 | 5..304 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:49 Download gff for
BS11179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 79..378 | 5..304 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:28:49 Download gff for
BS11179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8822469..8822666 | 45..242 | 100 | -> | Plus |
3R | 8822724..8822785 | 243..304 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:55:15 Download gff for
BS11179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4648191..4648388 | 45..242 | 100 | -> | Plus |
arm_3R | 4648446..4648507 | 243..304 | 100 | | Plus |
BS11179.complete Sequence
317 bp assembled on 2006-11-01
GenBank Submission: FJ636778
> BS11179.complete
GAAGTTATCAGTCGACATGCGTTTCGCTCTGTTTGCTTTTCTAGCACTGT
GCTTGCTGGCATTCGTCCTGGCTACTCCGGCCAAGGACACCAAGAAGCCG
GCCACCAACAGTTGCCAGCACAACTGCGGTGAAGTCTACGAGCCCGTTTG
TGCCAAGGCCAAAAACAGCAGCAAGGAGCGCCTCCTCACCTTTGGCAGCC
CGTGCGTCATGGCCAACTACAACTGCCAGCATGCCGACGATCCATTCGAG
CAGAAGTCCAAGGGCGAGTGCGGCGGTGGAGTGAGCGTTCGCCTGTCCTA
GAAGCTTTCTAGACCAT
BS11179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-RA | 285 | CG8369-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
CG8369-RC | 93 | CG8369-PC | 1..93 | 209..301 | 465 | 100 | Plus |
CG8369-RB | 93 | CG8369-PB | 1..93 | 209..301 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-RA | 431 | CG8369-RA | 91..378 | 17..304 | 1440 | 100 | Plus |
CG8369-RC | 774 | CG8369-RC | 459..721 | 42..304 | 1315 | 100 | Plus |
CG8369-RB | 479 | CG8369-RB | 166..426 | 44..304 | 1305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8822466..8822666 | 42..242 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 8822724..8822785 | 243..304 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:45:09 has no hits.
BS11179.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:46 Download gff for
BS11179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:59 Download gff for
BS11179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 68..367 | 5..304 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:54 Download gff for
BS11179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 91..375 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:46 Download gff for
BS11179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 68..367 | 5..304 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:18 Download gff for
BS11179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 91..375 | 17..301 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:18 Download gff for
BS11179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8822098..8822125 | 17..44 | 100 | -> | Plus |
3R | 8822469..8822666 | 45..242 | 100 | -> | Plus |
3R | 8822724..8822782 | 243..301 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:54 Download gff for
BS11179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4647820..4647847 | 17..44 | 100 | -> | Plus |
arm_3R | 4648191..4648388 | 45..242 | 100 | -> | Plus |
arm_3R | 4648446..4648504 | 243..301 | 100 | | Plus |
BS11179.pep Sequence
Translation from 16 to 300
> BS11179.pep
MRFALFAFLALCLLAFVLATPAKDTKKPATNSCQHNCGEVYEPVCAKAKN
SSKERLLTFGSPCVMANYNCQHADDPFEQKSKGECGGGVSVRLS*
BS11179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-PA | 94 | CG8369-PA | 1..94 | 1..94 | 505 | 100 | Plus |
CG8369-PC | 30 | CG8369-PC | 1..30 | 65..94 | 166 | 100 | Plus |
CG8369-PB | 30 | CG8369-PB | 1..30 | 65..94 | 166 | 100 | Plus |