Clone Sequence Records
BS11181.3prime Sequence
297 bp (296 high quality bases) assembled on 2006-04-19
> BS11181.3prime
ATGGTCTAGAAAGCTTCTAGTCGCGCATTTCGCCCTCCTCGTCGTCGTCC
TCCATGCCCTTGATATACAGCACGTTGTTGCAGCGGATGAGCACCTCGCC
AAGATTACCAGTCACGGAGCCCTCGATCACTTCCTCCGTGTTCGCCAGCT
GCATGTTCATGTAGCCGTCGACGGAGACCAGGAAGCCCTTGTACTCCTGG
CCCCACTTCAGCTTCACCAGCACCGGTTTTCCCGTCAGGCCGTTCAGGAA
GGGCTTGGGGTTAATGGGCATACCAGCCGACATGTCGACTGATAACT
BS11181.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16792-PA | 267 | DebB-RA | 1..267 | 283..17 | 1335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmF-RA | 467 | CG16792-RA | 122..388 | 283..17 | 1335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12183923..12184189 | 17..283 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:12:34 has no hits.
BS11181.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:13 Download gff for
BS11181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DebB-PA | 1..267 | 17..283 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:15 Download gff for
BS11181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16792-PA | 1..267 | 17..283 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:38:15 Download gff for
BS11181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmF-RA | 118..388 | 17..291 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:28 Download gff for
BS11181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmF-RA | 118..388 | 17..291 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:28 Download gff for
BS11181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12183923..12184192 | 17..287 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:38:15 Download gff for
BS11181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8071428..8071697 | 17..287 | 99 | -> | Plus |
BS11181.5prime Sequence
297 bp (296 high quality bases) assembled on 2006-04-19
> BS11181.5prime
GAAGTTATCAGTCGACATGTCGGCTGGTATGCCCATTAACCCCAAGCCCT
TCCTGAACGGCCTGACGGGAAAACCGGTGCTGGTGAAGCTGAAGTGGGGC
CAGGAGTACAAGGGCTTCCTGGTCTCCGTCGACGGCTACATGAACATGCA
GCTGGCGAACACGGAGGAAGTGATCGAGGGCTCCGTGACTGGTAATCTTG
GCGAGGTGCTCATCCGCTGCAACAACGTGCTGTATATCAAGGGCATGGAG
GACGACGACGAGGAGGGCGAAATGCGCGACTAGAAGCTTTCTAGACC
BS11181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16792-PA | 267 | DebB-RA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmF-RA | 467 | CG16792-RA | 122..388 | 17..283 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12183923..12184189 | 283..17 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:16:57 has no hits.
BS11181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:14 Download gff for
BS11181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DebB-PA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:16 Download gff for
BS11181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16792-PA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:04:11 Download gff for
BS11181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmF-RA | 118..388 | 9..283 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:17 Download gff for
BS11181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmF-RA | 118..388 | 9..283 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:17 Download gff for
BS11181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12183923..12184192 | 13..283 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:04:11 Download gff for
BS11181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8071428..8071697 | 13..283 | 99 | -> | Minus |
BS11181.complete Sequence
299 bp assembled on 2006-11-01
GenBank Submission: FJ636779
> BS11181.complete
GAAGTTATCAGTCGACATGTCGGCTGGTATGCCCATTAACCCCAAGCCCT
TCCTGAACGGCCTGACGGGAAAACCGGTGCTGGTGAAGCTGAAGTGGGGC
CAGGAGTACAAGGGCTTCCTGGTCTCCGTCGACGGCTACATGAACATGCA
GCTGGCGAACACGGAGGAAGTGATCGAGGGCTCCGTGACTGGTAATCTTG
GCGAGGTGCTCATCCGCTGCAACAACGTGCTGTATATCAAGGGCATGGAG
GACGACGACGAGGAGGGCGAAATGCGCGACTAGAAGCTTTCTAGACCAT
BS11181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmF-RA | 267 | CG16792-PA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmF-RA | 467 | CG16792-RA | 122..388 | 17..283 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12183923..12184189 | 283..17 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:33:26 has no hits.
BS11181.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:02 Download gff for
BS11181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DebB-RA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:29 Download gff for
BS11181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DebB-RA | 81..351 | 9..283 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:21 Download gff for
BS11181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmF-RA | 122..388 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:03 Download gff for
BS11181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DebB-RA | 81..351 | 9..283 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:13 Download gff for
BS11181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmF-RA | 122..388 | 17..283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:13 Download gff for
BS11181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12183923..12184189 | 17..283 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:21 Download gff for
BS11181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8071428..8071694 | 17..283 | 100 | | Minus |
BS11181.pep Sequence
Translation from 16 to 282
> BS11181.pep
MSAGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTE
EVIEGSVTGNLGEVLIRCNNVLYIKGMEDDDEEGEMRD*
BS11181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmF-PA | 88 | CG16792-PA | 1..88 | 1..88 | 463 | 100 | Plus |
CG9344-PA | 79 | CG9344-PA | 10..72 | 12..74 | 161 | 49.2 | Plus |