Clone BS11181 Report

Search the DGRC for BS11181

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:111
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptSmF-RA
Protein status:BS11181.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11181.3prime Sequence

297 bp (296 high quality bases) assembled on 2006-04-19

> BS11181.3prime
ATGGTCTAGAAAGCTTCTAGTCGCGCATTTCGCCCTCCTCGTCGTCGTCC
TCCATGCCCTTGATATACAGCACGTTGTTGCAGCGGATGAGCACCTCGCC
AAGATTACCAGTCACGGAGCCCTCGATCACTTCCTCCGTGTTCGCCAGCT
GCATGTTCATGTAGCCGTCGACGGAGACCAGGAAGCCCTTGTACTCCTGG
CCCCACTTCAGCTTCACCAGCACCGGTTTTCCCGTCAGGCCGTTCAGGAA
GGGCTTGGGGTTAATGGGCATACCAGCCGACATGTCGACTGATAACT

BS11181.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16792-PA 267 DebB-RA 1..267 283..17 1335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
SmF-RA 467 CG16792-RA 122..388 283..17 1335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12183923..12184189 17..283 1335 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:12:34 has no hits.

BS11181.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:13 Download gff for BS11181.3prime
Subject Subject Range Query Range Percent Splice Strand
DebB-PA 1..267 17..283 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:15 Download gff for BS11181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16792-PA 1..267 17..283 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:38:15 Download gff for BS11181.3prime
Subject Subject Range Query Range Percent Splice Strand
SmF-RA 118..388 17..291 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:28 Download gff for BS11181.3prime
Subject Subject Range Query Range Percent Splice Strand
SmF-RA 118..388 17..291 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:28 Download gff for BS11181.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12183923..12184192 17..287 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:38:15 Download gff for BS11181.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8071428..8071697 17..287 99 -> Plus

BS11181.5prime Sequence

297 bp (296 high quality bases) assembled on 2006-04-19

> BS11181.5prime
GAAGTTATCAGTCGACATGTCGGCTGGTATGCCCATTAACCCCAAGCCCT
TCCTGAACGGCCTGACGGGAAAACCGGTGCTGGTGAAGCTGAAGTGGGGC
CAGGAGTACAAGGGCTTCCTGGTCTCCGTCGACGGCTACATGAACATGCA
GCTGGCGAACACGGAGGAAGTGATCGAGGGCTCCGTGACTGGTAATCTTG
GCGAGGTGCTCATCCGCTGCAACAACGTGCTGTATATCAAGGGCATGGAG
GACGACGACGAGGAGGGCGAAATGCGCGACTAGAAGCTTTCTAGACC

BS11181.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16792-PA 267 DebB-RA 1..267 17..283 1335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
SmF-RA 467 CG16792-RA 122..388 17..283 1335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12183923..12184189 283..17 1335 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:16:57 has no hits.

BS11181.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:14 Download gff for BS11181.5prime
Subject Subject Range Query Range Percent Splice Strand
DebB-PA 1..267 17..283 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:16 Download gff for BS11181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16792-PA 1..267 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:04:11 Download gff for BS11181.5prime
Subject Subject Range Query Range Percent Splice Strand
SmF-RA 118..388 9..283 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:17 Download gff for BS11181.5prime
Subject Subject Range Query Range Percent Splice Strand
SmF-RA 118..388 9..283 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:17 Download gff for BS11181.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12183923..12184192 13..283 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:04:11 Download gff for BS11181.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8071428..8071697 13..283 99 -> Minus

BS11181.complete Sequence

299 bp assembled on 2006-11-01

GenBank Submission: FJ636779

> BS11181.complete
GAAGTTATCAGTCGACATGTCGGCTGGTATGCCCATTAACCCCAAGCCCT
TCCTGAACGGCCTGACGGGAAAACCGGTGCTGGTGAAGCTGAAGTGGGGC
CAGGAGTACAAGGGCTTCCTGGTCTCCGTCGACGGCTACATGAACATGCA
GCTGGCGAACACGGAGGAAGTGATCGAGGGCTCCGTGACTGGTAATCTTG
GCGAGGTGCTCATCCGCTGCAACAACGTGCTGTATATCAAGGGCATGGAG
GACGACGACGAGGAGGGCGAAATGCGCGACTAGAAGCTTTCTAGACCAT

BS11181.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
SmF-RA 267 CG16792-PA 1..267 17..283 1335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
SmF-RA 467 CG16792-RA 122..388 17..283 1335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12183923..12184189 283..17 1335 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:33:26 has no hits.

BS11181.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:02 Download gff for BS11181.complete
Subject Subject Range Query Range Percent Splice Strand
DebB-RA 1..267 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:29 Download gff for BS11181.complete
Subject Subject Range Query Range Percent Splice Strand
DebB-RA 81..351 9..283 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:21 Download gff for BS11181.complete
Subject Subject Range Query Range Percent Splice Strand
SmF-RA 122..388 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:03 Download gff for BS11181.complete
Subject Subject Range Query Range Percent Splice Strand
DebB-RA 81..351 9..283 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:13 Download gff for BS11181.complete
Subject Subject Range Query Range Percent Splice Strand
SmF-RA 122..388 17..283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:13 Download gff for BS11181.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12183923..12184189 17..283 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:21 Download gff for BS11181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8071428..8071694 17..283 100   Minus

BS11181.pep Sequence

Translation from 16 to 282

> BS11181.pep
MSAGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTE
EVIEGSVTGNLGEVLIRCNNVLYIKGMEDDDEEGEMRD*

BS11181.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
SmF-PA 88 CG16792-PA 1..88 1..88 463 100 Plus
CG9344-PA 79 CG9344-PA 10..72 12..74 161 49.2 Plus