Clone BS11189 Report

Search the DGRC for BS11189

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:111
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG3321-RA
Protein status:BS11189.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11189.3prime Sequence

276 bp (275 high quality bases) assembled on 2006-04-19

> BS11189.3prime
ATGGTCTAGAAAGCTTCTAGTGCTTGGGAGTGGGCTTCGAAAGCTCAGCC
AAGGCACGGGCCTCAGCCTCTGCGCTGCGCTTCTTCTCCTCGGCGAGCTT
GGCATCACGGACGGCCTTCTGCTGTGCCTCGATCTCGCGCAACTTCTCCT
CCTTCTTGGACAGGCGGCTCTGGTGGGCGGCGCCGTAGGCAATGCCCACC
AGGAGCAGGGACCATCTGCCGAACTTGATCAGCGGGGAAACGCGAACGGG
AGCCTGCGACATGTCGACTGATAACT

BS11189.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3321-PA 246 CG3321-RA 1..246 262..17 1230 100 Minus
CG3321-PB 246 CG3321-RB 1..246 262..17 1230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3321-RC 664 CG3321-RC 219..465 263..17 1235 100 Minus
CG3321-RB 599 CG3321-RB 154..400 263..17 1235 100 Minus
CG3321-RA 543 CG3321-RA 98..344 263..17 1235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14327290..14327536 263..17 1235 100 Minus
Blast to na_te.dros performed on 2015-02-09 03:34:18 has no hits.

BS11189.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:29 Download gff for BS11189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3321-PA 1..246 17..262 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:33 Download gff for BS11189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3321-PB 1..246 17..262 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:56:27 Download gff for BS11189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3321-RA 98..354 6..263 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:27:46 Download gff for BS11189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3321-RA 98..354 6..263 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:27:46 Download gff for BS11189.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14327290..14327546 6..263 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:56:27 Download gff for BS11189.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10153012..10153268 6..263 98   Minus

BS11189.5prime Sequence

276 bp (275 high quality bases) assembled on 2006-04-19

> BS11189.5prime
GAAGTTATCAGTCGACATGTCGCAGGCTCCCGTTCGCGTTTCCCCGCTGA
TCAAGTTCGGCAGATGGTCCCTGCTCCTGGTGGGCATTGCCTACGGCGCC
GCCCACCAGAGCCGCCTGTCCAAGAAGGAGGAGAAGTTGCGCGAGATCGA
GGCACAGCAGAAGGCCGTCCGTGATGCCAAGCTCGCCGAGGAGAAGAAGC
GCAGCGCAGAGGCTGAGGCCCGTGCCTTGGCTGAGCTTTCGAAGCCCACT
CCCAAGCACTAGAAGCTTTCTAGACC

BS11189.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3321-PA 246 CG3321-RA 1..246 17..262 1230 100 Plus
CG3321-PB 246 CG3321-RB 1..246 17..262 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3321-RC 664 CG3321-RC 219..465 16..262 1235 100 Plus
CG3321-RB 599 CG3321-RB 154..400 16..262 1235 100 Plus
CG3321-RA 543 CG3321-RA 98..344 16..262 1235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14327290..14327536 16..262 1235 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:58:09 has no hits.

BS11189.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:30 Download gff for BS11189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3321-PA 1..246 17..262 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:34 Download gff for BS11189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3321-PB 1..246 17..262 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:43 Download gff for BS11189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3321-RA 98..354 16..273 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:34:10 Download gff for BS11189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3321-RA 98..354 16..273 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:34:10 Download gff for BS11189.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14327290..14327546 16..273 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:43 Download gff for BS11189.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10153012..10153268 16..273 98   Plus

BS11189.complete Sequence

278 bp assembled on 2006-11-01

GenBank Submission: FJ636781

> BS11189.complete
GAAGTTATCAGTCGACATGTCGCAGGCTCCCGTTCGCGTTTCCCCGCTGA
TCAAGTTCGGCAGATGGTCCCTGCTCCTGGTGGGCATTGCCTACGGCGCC
GCCCACCAGAGCCGCCTGTCCAAGAAGGAGGAGAAGTTGCGCGAGATCGA
GGCACAGCAGAAGGCCGTCCGTGATGCCAAGCTCGCCGAGGAGAAGAAGC
GCAGCGCAGAGGCTGAGGCCCGTGCCTTGGCTGAGCTTTCGAAGCCCACT
CCCAAGCACTAGAAGCTTTCTAGACCAT

BS11189.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3321-RC 246 CG3321-PC 1..246 17..262 1230 100 Plus
CG3321-RB 246 CG3321-PB 1..246 17..262 1230 100 Plus
CG3321-RA 246 CG3321-PA 1..246 17..262 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3321-RC 664 CG3321-RC 219..465 16..262 1235 100 Plus
CG3321-RB 599 CG3321-RB 154..400 16..262 1235 100 Plus
CG3321-RA 543 CG3321-RA 98..344 16..262 1235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14327290..14327536 16..262 1235 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:07:55 has no hits.

BS11189.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:00 Download gff for BS11189.complete
Subject Subject Range Query Range Percent Splice Strand
CG3321-RB 1..246 17..262 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:57 Download gff for BS11189.complete
Subject Subject Range Query Range Percent Splice Strand
CG3321-RB 198..454 16..273 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:05 Download gff for BS11189.complete
Subject Subject Range Query Range Percent Splice Strand
CG3321-RA 99..344 17..262 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:00 Download gff for BS11189.complete
Subject Subject Range Query Range Percent Splice Strand
CG3321-RB 198..454 16..273 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:57 Download gff for BS11189.complete
Subject Subject Range Query Range Percent Splice Strand
CG3321-RA 99..344 17..262 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:57 Download gff for BS11189.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14327291..14327536 17..262 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:05 Download gff for BS11189.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10153013..10153258 17..262 100   Plus

BS11189.pep Sequence

Translation from 16 to 261

> BS11189.pep
MSQAPVRVSPLIKFGRWSLLLVGIAYGAAHQSRLSKKEEKLREIEAQQKA
VRDAKLAEEKKRSAEAEARALAELSKPTPKH*

BS11189.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3321-PC 81 CG3321-PC 1..81 1..81 396 100 Plus
CG3321-PB 81 CG3321-PB 1..81 1..81 396 100 Plus
CG3321-PA 81 CG3321-PA 1..81 1..81 396 100 Plus