Clone Sequence Records
BS11190.3prime Sequence
384 bp (383 high quality bases) assembled on 2006-04-19
> BS11190.3prime
ATGGTCTAGAAAGCTTCTAGGCGGCCTTGTTGAGGCGCTTCTGGCGCTCC
AGCAGCCGGCGCTCCCGCTCGAACTCCTTCATGCGGAGCACGTAGTCCTC
GTACTCGCAGGTGAGGTACTCGTGCTTCTGGTGGGCGCACTTGTACACAA
ACGGGAAGGTGTCGCTGCGGCAGGCCTGGTAGGCGATAGCCAGGTGGGCG
CAGTAGTCGCGGAATTCCAGCGGCAGCTTGGCGGACTCCATCTCCTCCTG
GGTGGCGATCATCACACGCTCCTTGCGCGACTTGAAGCCCAGCAGTGGGT
CAAAGGTGGGCACCACGTCCGGGCCGGGCATCACGTCCGGTTTCATGTAG
TGCGTCAGCGCGTTGCCCATGTCGACTGATAACT
BS11190.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-PA | 354 | CG5548-RA | 1..354 | 370..17 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-RC | 751 | CG5548-RC | 253..607 | 370..16 | 1775 | 100 | Minus |
| CG5548-RB | 943 | CG5548-RB | 67..421 | 370..16 | 1775 | 100 | Minus |
| CG5548-RA | 565 | CG5548-RA | 67..421 | 370..16 | 1775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15064050..15064404 | 370..16 | 1775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 17:24:24 has no hits.
BS11190.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:31 Download gff for
BS11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:36 Download gff for
BS11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:34:40 Download gff for
BS11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 58..424 | 11..378 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:01:34 Download gff for
BS11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 58..424 | 11..378 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:01:34 Download gff for
BS11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15064046..15064407 | 11..378 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:34:40 Download gff for
BS11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14958079..14958440 | 11..378 | 98 | | Minus |
BS11190.5prime Sequence
384 bp (383 high quality bases) assembled on 2006-04-19
> BS11190.5prime
GAAGTTATCAGTCGACATGGGCAACGCGCTGACGCACTACATGAAACCGG
ACGTGATGCCCGGCCCGGACGTGGTGCCCACCTTTGACCCACTGCTGGGC
TTCAAGTCGCGCAAGGAGCGTGTGATGATCGCCACCCAGGAGGAGATGGA
GTCCGCCAAGCTGCCGCTGGAATTCCGCGACTACTGCGCCCACCTGGCTA
TCGCCTACCAGGCCTGCCGCAGCGACACCTTCCCGTTTGTGTACAAGTGC
GCCCACCAGAAGCACGAGTACCTCACCTGCGAGTACGAGGACTACGTGCT
CCGCATGAAGGAGTTCGAGCGGGAGCGCCGGCTGCTGGAGCGCCAGAAGC
GCCTCAACAAGGCCGCCTAGAAGCTTTCTAGACC
BS11190.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-PA | 354 | CG5548-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-RC | 751 | CG5548-RC | 253..607 | 17..371 | 1775 | 100 | Plus |
| CG5548-RB | 943 | CG5548-RB | 67..421 | 17..371 | 1775 | 100 | Plus |
| CG5548-RA | 565 | CG5548-RA | 67..421 | 17..371 | 1775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15064050..15064404 | 17..371 | 1775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:06:04 has no hits.
BS11190.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:32 Download gff for
BS11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:37 Download gff for
BS11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:26:19 Download gff for
BS11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 58..424 | 9..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:26 Download gff for
BS11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 58..424 | 9..376 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:26 Download gff for
BS11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15064046..15064407 | 9..376 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:26:19 Download gff for
BS11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14958079..14958440 | 9..376 | 98 | | Plus |
BS11190.complete Sequence
386 bp assembled on 2006-11-01
GenBank Submission: FJ636782
> BS11190.complete
GAAGTTATCAGTCGACATGGGCAACGCGCTGACGCACTACATGAAACCGG
ACGTGATGCCCGGCCCGGACGTGGTGCCCACCTTTGACCCACTGCTGGGC
TTCAAGTCGCGCAAGGAGCGTGTGATGATCGCCACCCAGGAGGAGATGGA
GTCCGCCAAGCTGCCGCTGGAATTCCGCGACTACTGCGCCCACCTGGCTA
TCGCCTACCAGGCCTGCCGCAGCGACACCTTCCCGTTTGTGTACAAGTGC
GCCCACCAGAAGCACGAGTACCTCACCTGCGAGTACGAGGACTACGTGCT
CCGCATGAAGGAGTTCGAGCGGGAGCGCCGGCTGCTGGAGCGCCAGAAGC
GCCTCAACAAGGCCGCCTAGAAGCTTTCTAGACCAT
BS11190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-RC | 354 | CG5548-PC | 1..354 | 17..370 | 1770 | 100 | Plus |
| CG5548-RB | 354 | CG5548-PB | 1..354 | 17..370 | 1770 | 100 | Plus |
| CG5548-RA | 354 | CG5548-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-RC | 751 | CG5548-RC | 253..607 | 17..371 | 1775 | 100 | Plus |
| CG5548-RB | 943 | CG5548-RB | 67..421 | 17..371 | 1775 | 100 | Plus |
| CG5548-RA | 565 | CG5548-RA | 67..421 | 17..371 | 1775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15064050..15064404 | 17..371 | 1775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:59:23 has no hits.
BS11190.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:09:31 Download gff for
BS11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:25:13 Download gff for
BS11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 65..431 | 9..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:48 Download gff for
BS11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 67..420 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:09:31 Download gff for
BS11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 65..431 | 9..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:12 Download gff for
BS11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 67..420 | 17..370 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:12 Download gff for
BS11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15064050..15064403 | 17..370 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:48 Download gff for
BS11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14958083..14958436 | 17..370 | 100 | | Plus |
BS11190.pep Sequence
Translation from 16 to 369
> BS11190.pep
MGNALTHYMKPDVMPGPDVVPTFDPLLGFKSRKERVMIATQEEMESAKLP
LEFRDYCAHLAIAYQACRSDTFPFVYKCAHQKHEYLTCEYEDYVLRMKEF
ERERRLLERQKRLNKAA*
BS11190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-PC | 117 | CG5548-PC | 1..117 | 1..117 | 626 | 100 | Plus |
| CG5548-PB | 117 | CG5548-PB | 1..117 | 1..117 | 626 | 100 | Plus |
| CG5548-PA | 117 | CG5548-PA | 1..117 | 1..117 | 626 | 100 | Plus |
