Clone Sequence Records
BS11196.5prime Sequence
300 bp (299 high quality bases) assembled on 2006-04-19
> BS11196.5prime
GAAGTTATCAGTCGACATGTCGGATCGCAAGGCGGTGATCAAGAACGCTG
ACATGAGCGAGGAGATGCAGCAGGACGCTGTTGACTGCGCCACCCAGGCC
CTGGAGAAGTACAACATCGAGAAGGACATCGCCGCCTTCATCAAGAAGGA
GTTCGACAAGAAGTACAACCCCACCTGGCACTGCATCGTGGGCCGCAACT
TCGGATCCTATGTGACCCACGAGACGCGCCACTTCATCTATTTCTACCTG
GGCCAGGTGGCCATTCTGCTCTTCAAGAGCGGTTAAAAGCTTTCTAGACC
BS11196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5450-PA | 270 | Cdlc2-RA | 1..270 | 17..286 | 1350 | 100 | Plus |
CG5450-PB | 270 | Cdlc2-RB | 1..270 | 17..286 | 1350 | 100 | Plus |
CG6998-PB | 270 | ctp-RB | 79..218 | 95..234 | 250 | 87.1 | Plus |
CG6998-PD | 270 | ctp-RD | 79..218 | 95..234 | 250 | 87.1 | Plus |
CG6998-PA | 270 | ctp-RA | 79..218 | 95..234 | 250 | 87.1 | Plus |
CG6998-PC | 270 | ctp-RC | 79..218 | 95..234 | 250 | 87.1 | Plus |
CG6998-PB | 270 | ctp-RB | 1..59 | 17..75 | 145 | 89.8 | Plus |
CG6998-PD | 270 | ctp-RD | 1..59 | 17..75 | 145 | 89.8 | Plus |
CG6998-PA | 270 | ctp-RA | 1..59 | 17..75 | 145 | 89.8 | Plus |
CG6998-PC | 270 | ctp-RC | 1..59 | 17..75 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-RC | 671 | CG5450-RC | 152..422 | 17..287 | 1355 | 100 | Plus |
Cdlc2-RB | 621 | CG5450-RB | 102..372 | 17..287 | 1355 | 100 | Plus |
Cdlc2-RA | 675 | CG5450-RA | 156..426 | 17..287 | 1355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1344616..1344886 | 17..287 | 1355 | 100 | Plus |
X | 23542271 | X | 4698295..4698459 | 123..287 | 450 | 84.8 | Plus |
X | 23542271 | X | 4691737..4691845 | 17..125 | 305 | 85.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:45:51 has no hits.
BS11196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:44 Download gff for
BS11196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-PA | 1..270 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:54 Download gff for
BS11196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5450-PA | 1..270 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:37:31 Download gff for
BS11196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 145..437 | 7..300 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:02 Download gff for
BS11196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 145..437 | 7..300 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:02 Download gff for
BS11196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1344605..1344897 | 7..300 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:37:31 Download gff for
BS11196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1344605..1344897 | 7..300 | 96 | | Plus |
BS11196.3prime Sequence
300 bp (299 high quality bases) assembled on 2006-04-19
> BS11196.3prime
ATGGTCTAGAAAGCTTTTAACCGCTCTTGAAGAGCAGAATGGCCACCTGG
CCCAGGTAGAAATAGATGAAGTGGCGCGTCTCGTGGGTCACATAGGATCC
GAAGTTGCGGCCCACGATGCAGTGCCAGGTGGGGTTGTACTTCTTGTCGA
ACTCCTTCTTGATGAAGGCGGCGATGTCCTTCTCGATGTTGTACTTCTCC
AGGGCCTGGGTGGCGCAGTCAACAGCGTCCTGCTGCATCTCCTCGCTCAT
GTCAGCGTTCTTGATCACCGCCTTGCGATCCGACATGTCGACTGATAACT
BS11196.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5450-PA | 270 | Cdlc2-RA | 1..270 | 286..17 | 1350 | 100 | Minus |
CG5450-PB | 270 | Cdlc2-RB | 1..270 | 286..17 | 1350 | 100 | Minus |
CG6998-PB | 270 | ctp-RB | 79..218 | 208..69 | 250 | 87.1 | Minus |
CG6998-PD | 270 | ctp-RD | 79..218 | 208..69 | 250 | 87.1 | Minus |
CG6998-PA | 270 | ctp-RA | 79..218 | 208..69 | 250 | 87.1 | Minus |
CG6998-PC | 270 | ctp-RC | 79..218 | 208..69 | 250 | 87.1 | Minus |
CG6998-PB | 270 | ctp-RB | 1..59 | 286..228 | 145 | 89.8 | Minus |
CG6998-PD | 270 | ctp-RD | 1..59 | 286..228 | 145 | 89.8 | Minus |
CG6998-PA | 270 | ctp-RA | 1..59 | 286..228 | 145 | 89.8 | Minus |
CG6998-PC | 270 | ctp-RC | 1..59 | 286..228 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-RC | 671 | CG5450-RC | 152..422 | 286..16 | 1355 | 100 | Minus |
Cdlc2-RB | 621 | CG5450-RB | 102..372 | 286..16 | 1355 | 100 | Minus |
Cdlc2-RA | 675 | CG5450-RA | 156..426 | 286..16 | 1355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1344616..1344886 | 286..16 | 1355 | 100 | Minus |
X | 23542271 | X | 4698295..4698459 | 180..16 | 450 | 84.8 | Minus |
X | 23542271 | X | 4691737..4691845 | 286..178 | 305 | 85.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:12:37 has no hits.
BS11196.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:43 Download gff for
BS11196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-PA | 1..270 | 17..286 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:29:52 Download gff for
BS11196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5450-PA | 1..270 | 17..286 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:55:19 Download gff for
BS11196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 145..437 | 4..296 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:51 Download gff for
BS11196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 145..437 | 4..296 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:51 Download gff for
BS11196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1344605..1344897 | 4..296 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:55:19 Download gff for
BS11196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1344605..1344897 | 4..296 | 97 | | Minus |
BS11196.complete Sequence
302 bp assembled on 2006-11-01
GenBank Submission: FJ636783
> BS11196.complete
GAAGTTATCAGTCGACATGTCGGATCGCAAGGCGGTGATCAAGAACGCTG
ACATGAGCGAGGAGATGCAGCAGGACGCTGTTGACTGCGCCACCCAGGCC
CTGGAGAAGTACAACATCGAGAAGGACATCGCCGCCTTCATCAAGAAGGA
GTTCGACAAGAAGTACAACCCCACCTGGCACTGCATCGTGGGCCGCAACT
TCGGATCCTATGTGACCCACGAGACGCGCCACTTCATCTATTTCTACCTG
GGCCAGGTGGCCATTCTGCTCTTCAAGAGCGGTTAAAAGCTTTCTAGACC
AT
BS11196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-RC | 270 | CG5450-PC | 1..270 | 17..286 | 1350 | 100 | Plus |
Cdlc2-RB | 270 | CG5450-PB | 1..270 | 17..286 | 1350 | 100 | Plus |
Cdlc2-RA | 270 | CG5450-PA | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-RC | 671 | CG5450-RC | 152..422 | 17..287 | 1355 | 100 | Plus |
Cdlc2-RB | 621 | CG5450-RB | 102..372 | 17..287 | 1355 | 100 | Plus |
Cdlc2-RA | 675 | CG5450-RA | 156..426 | 17..287 | 1355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1344616..1344886 | 17..287 | 1355 | 100 | Plus |
X | 23542271 | X | 4698295..4698459 | 123..287 | 450 | 84.8 | Plus |
X | 23542271 | X | 4691737..4691845 | 17..125 | 305 | 85.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:02:46 has no hits.
BS11196.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:01 Download gff for
BS11196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RB | 1..270 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:01 Download gff for
BS11196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 126..418 | 7..299 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:06 Download gff for
BS11196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 156..423 | 17..284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:01 Download gff for
BS11196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 126..418 | 7..299 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:26 Download gff for
BS11196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 156..423 | 17..284 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:26 Download gff for
BS11196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1344616..1344883 | 17..284 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:06 Download gff for
BS11196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1344616..1344883 | 17..284 | 100 | | Plus |
BS11196.pep Sequence
Translation from 16 to 285
> BS11196.pep
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKY
NPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG*
BS11196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-PC | 89 | CG5450-PC | 1..89 | 1..89 | 472 | 100 | Plus |
Cdlc2-PB | 89 | CG5450-PB | 1..89 | 1..89 | 472 | 100 | Plus |
Cdlc2-PA | 89 | CG5450-PA | 1..89 | 1..89 | 472 | 100 | Plus |
ctp-PE | 89 | CG6998-PE | 1..89 | 1..89 | 469 | 98.9 | Plus |
ctp-PC | 89 | CG6998-PC | 1..89 | 1..89 | 469 | 98.9 | Plus |