Clone Sequence Records
BS11206.5prime Sequence
693 bp (692 high quality bases) assembled on 2006-04-18
> BS11206.5prime
GAAGTTATCAGTCGACATGGCGTCCACGTCGAGTGTGAAGCTGATTGTTT
ACGCCCTGGACGTACTTTGCACACTGCTAGCCTTGGTGCTGATATCCTTC
GGCATCTATGTGGCGGTGTCCTACAACCTAAACGAGATCGGTCAGCTGAC
GGCCTACGGCTACGTGGGACTCGGGGCTGCTGCCCTGCTGGTTGTCCTTT
GGGGATACCTGTCCGCCTGGCGCGAGAACGTGTGCTGCACAGTGACGTTC
ATTATTTTCCTGTGCCTGGTCATCATTGCCCAGTTCGCCGTCGTCTACTT
GCTGATCACCCAGGAGAAGACGGTGGCCTCCAACCTGGCTAATGCCCTGG
AGGCCACCTGGGAGGAGGAACTGAACAGCCCTGGTGCCATGTCGCTGTAC
CAGAACTGGTTCCAGTGCTGCGGTCGTGGAAGTCCCCAGGATTACATCGT
CAACGAACGACTGCCGCCGGAGACATGTTTCCGAAACCACGACAAGAGCA
AGCCGGAGAACCTGATCCACACCGGCTGTCGGGTGGAGTTCGAGAACTAC
TGGCAACACTTGACCAAGATTTTTAACATCCTGGCCCTCGTACTCATTGG
CTTCGAGCTCCTGCTGAGTGTCATCTCTTGCCGCCTGTGCAACAGCATTC
GCAACGATGCTCGACGTTCTTACTTTTAGAAGCTTTCTAGACC
BS11206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12845-PA | 663 | Tsp42Ef-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ef-RA | 1347 | CG12845-RA | 375..1039 | 16..680 | 3325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7027443..7027641 | 409..607 | 995 | 100 | Plus |
2R | 25286936 | 2R | 7026984..7027157 | 74..247 | 870 | 100 | Plus |
2R | 25286936 | 2R | 7027218..7027380 | 247..409 | 815 | 100 | Plus |
2R | 25286936 | 2R | 7027700..7027774 | 606..680 | 375 | 100 | Plus |
2R | 25286936 | 2R | 7025384..7025441 | 16..73 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:22:27 has no hits.
BS11206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:56 Download gff for
BS11206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12845-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:10 Download gff for
BS11206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12845-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:23:02 Download gff for
BS11206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 363..1039 | 3..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:59 Download gff for
BS11206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 363..1039 | 3..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:59 Download gff for
BS11206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7025372..7025441 | 3..73 | 92 | -> | Plus |
2R | 7026984..7027157 | 74..247 | 100 | -> | Plus |
2R | 7027219..7027380 | 248..409 | 100 | -> | Plus |
2R | 7027444..7027641 | 410..607 | 100 | -> | Plus |
2R | 7027702..7027774 | 608..680 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:23:02 Download gff for
BS11206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2914724..2914885 | 248..409 | 100 | -> | Plus |
arm_2R | 2912877..2912946 | 3..73 | 92 | -> | Plus |
arm_2R | 2914489..2914662 | 74..247 | 100 | -> | Plus |
arm_2R | 2914949..2915146 | 410..607 | 100 | -> | Plus |
arm_2R | 2915207..2915279 | 608..680 | 100 | | Plus |
BS11206.3prime Sequence
693 bp (692 high quality bases) assembled on 2006-04-18
> BS11206.3prime
ATGGTCTAGAAAGCTTCTAAAAGTAAGAACGTCGAGCATCGTTGCGAATG
CTGTTGCACAGGCGGCAAGAGATGACACTCAGCAGGAGCTCGAAGCCAAT
GAGTACGAGGGCCAGGATGTTAAAAATCTTGGTCAAGTGTTGCCAGTAGT
TCTCGAACTCCACCCGACAGCCGGTGTGGATCAGGTTCTCCGGCTTGCTC
TTGTCGTGGTTTCGGAAACATGTCTCCGGCGGCAGTCGTTCGTTGACGAT
GTAATCCTGGGGACTTCCACGACCGCAGCACTGGAACCAGTTCTGGTACA
GCGACATGGCACCAGGGCTGTTCAGTTCCTCCTCCCAGGTGGCCTCCAGG
GCATTAGCCAGGTTGGAGGCCACCGTCTTCTCCTGGGTGATCAGCAAGTA
GACGACGGCGAACTGGGCAATGATGACCAGGCACAGGAAAATAATGAACG
TCACTGTGCAGCACACGTTCTCGCGCCAGGCGGACAGGTATCCCCAAAGG
ACAACCAGCAGGGCAGCAGCCCCGAGTCCCACGTAGCCGTAGGCCGTCAG
CTGACCGATCTCGTTTAGGTTGTAGGACACCGCCACATAGATGCCGAAGG
ATATCAGCACCAAGGCTAGCAGTGTGCAAAGTACGTCCAGGGCGTAAACA
ATCAGCTTCACACTCGACGTGGACGCCATGTCGACTGATAACT
BS11206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12845-PA | 663 | Tsp42Ef-RA | 1..663 | 679..17 | 3315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ef-RA | 1347 | CG12845-RA | 375..1039 | 680..16 | 3325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7027443..7027641 | 287..89 | 995 | 100 | Minus |
2R | 25286936 | 2R | 7026984..7027157 | 622..449 | 870 | 100 | Minus |
2R | 25286936 | 2R | 7027218..7027380 | 449..287 | 815 | 100 | Minus |
2R | 25286936 | 2R | 7027700..7027774 | 90..16 | 375 | 100 | Minus |
2R | 25286936 | 2R | 7025384..7025441 | 680..623 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 17:57:13 has no hits.
BS11206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:55 Download gff for
BS11206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12845-PA | 1..663 | 17..679 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:08 Download gff for
BS11206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12845-PA | 1..663 | 17..679 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:39:05 Download gff for
BS11206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 363..1039 | 16..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:05:44 Download gff for
BS11206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 363..1039 | 16..693 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:05:44 Download gff for
BS11206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7025372..7025441 | 623..693 | 92 | -> | Minus |
2R | 7026984..7027157 | 449..622 | 100 | -> | Minus |
2R | 7027219..7027380 | 287..448 | 100 | -> | Minus |
2R | 7027444..7027641 | 89..286 | 100 | -> | Minus |
2R | 7027702..7027774 | 16..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:39:05 Download gff for
BS11206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2914949..2915146 | 89..286 | 100 | -> | Minus |
arm_2R | 2915207..2915279 | 16..88 | 100 | | Minus |
arm_2R | 2912877..2912946 | 623..693 | 92 | -> | Minus |
arm_2R | 2914489..2914662 | 449..622 | 100 | -> | Minus |
arm_2R | 2914724..2914885 | 287..448 | 100 | -> | Minus |
BS11206.complete Sequence
695 bp assembled on 2006-11-01
GenBank Submission: FJ636784
> BS11206.complete
GAAGTTATCAGTCGACATGGCGTCCACGTCGAGTGTGAAGCTGATTGTTT
ACGCCCTGGACGTACTTTGCACACTGCTAGCCTTGGTGCTGATATCCTTC
GGCATCTATGTGGCGGTGTCCTACAACCTAAACGAGATCGGTCAGCTGAC
GGCCTACGGCTACGTGGGACTCGGGGCTGCTGCCCTGCTGGTTGTCCTTT
GGGGATACCTGTCCGCCTGGCGCGAGAACGTGTGCTGCACAGTGACGTTC
ATTATTTTCCTGTGCCTGGTCATCATTGCCCAGTTCGCCGTCGTCTACTT
GCTGATCACCCAGGAGAAGACGGTGGCCTCCAACCTGGCTAATGCCCTGG
AGGCCACCTGGGAGGAGGAACTGAACAGCCCTGGTGCCATGTCGCTGTAC
CAGAACTGGTTCCAGTGCTGCGGTCGTGGAAGTCCCCAGGATTACATCGT
CAACGAACGACTGCCGCCGGAGACATGTTTCCGAAACCACGACAAGAGCA
AGCCGGAGAACCTGATCCACACCGGCTGTCGGGTGGAGTTCGAGAACTAC
TGGCAACACTTGACCAAGATTTTTAACATCCTGGCCCTCGTACTCATTGG
CTTCGAGCTCCTGCTGAGTGTCATCTCTTGCCGCCTGTGCAACAGCATTC
GCAACGATGCTCGACGTTCTTACTTTTAGAAGCTTTCTAGACCAT
BS11206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ef-RA | 663 | CG12845-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ef-RA | 1347 | CG12845-RA | 375..1039 | 16..680 | 3325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7027443..7027641 | 409..607 | 995 | 100 | Plus |
2R | 25286936 | 2R | 7026984..7027157 | 74..247 | 870 | 100 | Plus |
2R | 25286936 | 2R | 7027218..7027380 | 247..409 | 815 | 100 | Plus |
2R | 25286936 | 2R | 7027700..7027774 | 606..680 | 375 | 100 | Plus |
2R | 25286936 | 2R | 7025384..7025441 | 16..73 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:55:10 has no hits.
BS11206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:11 Download gff for
BS11206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:32 Download gff for
BS11206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 361..1037 | 3..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:35 Download gff for
BS11206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 376..1038 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:11 Download gff for
BS11206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 361..1037 | 3..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:03 Download gff for
BS11206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 376..1038 | 17..679 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:03 Download gff for
BS11206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7025385..7025441 | 17..73 | 100 | -> | Plus |
2R | 7026984..7027157 | 74..247 | 100 | -> | Plus |
2R | 7027219..7027380 | 248..409 | 100 | -> | Plus |
2R | 7027444..7027641 | 410..607 | 100 | -> | Plus |
2R | 7027702..7027773 | 608..679 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:35 Download gff for
BS11206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2912890..2912946 | 17..73 | 100 | -> | Plus |
arm_2R | 2914489..2914662 | 74..247 | 100 | -> | Plus |
arm_2R | 2914724..2914885 | 248..409 | 100 | -> | Plus |
arm_2R | 2914949..2915146 | 410..607 | 100 | -> | Plus |
arm_2R | 2915207..2915278 | 608..679 | 100 | | Plus |
BS11206.pep Sequence
Translation from 16 to 678
> BS11206.pep
MASTSSVKLIVYALDVLCTLLALVLISFGIYVAVSYNLNEIGQLTAYGYV
GLGAAALLVVLWGYLSAWRENVCCTVTFIIFLCLVIIAQFAVVYLLITQE
KTVASNLANALEATWEEELNSPGAMSLYQNWFQCCGRGSPQDYIVNERLP
PETCFRNHDKSKPENLIHTGCRVEFENYWQHLTKIFNILALVLIGFELLL
SVISCRLCNSIRNDARRSYF*
BS11206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ef-PA | 220 | CG12845-PA | 1..220 | 1..220 | 1150 | 100 | Plus |
Tsp42Ei-PB | 229 | CG12843-PB | 6..224 | 5..218 | 266 | 29 | Plus |
Tsp42Ei-PA | 229 | CG12843-PA | 6..224 | 5..218 | 266 | 29 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 6..226 | 5..220 | 257 | 27.9 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 6..226 | 5..220 | 257 | 27.9 | Plus |