Clone BS11206 Report

Search the DGRC for BS11206

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ef-RA
Protein status:BS11206.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11206.5prime Sequence

693 bp (692 high quality bases) assembled on 2006-04-18

> BS11206.5prime
GAAGTTATCAGTCGACATGGCGTCCACGTCGAGTGTGAAGCTGATTGTTT
ACGCCCTGGACGTACTTTGCACACTGCTAGCCTTGGTGCTGATATCCTTC
GGCATCTATGTGGCGGTGTCCTACAACCTAAACGAGATCGGTCAGCTGAC
GGCCTACGGCTACGTGGGACTCGGGGCTGCTGCCCTGCTGGTTGTCCTTT
GGGGATACCTGTCCGCCTGGCGCGAGAACGTGTGCTGCACAGTGACGTTC
ATTATTTTCCTGTGCCTGGTCATCATTGCCCAGTTCGCCGTCGTCTACTT
GCTGATCACCCAGGAGAAGACGGTGGCCTCCAACCTGGCTAATGCCCTGG
AGGCCACCTGGGAGGAGGAACTGAACAGCCCTGGTGCCATGTCGCTGTAC
CAGAACTGGTTCCAGTGCTGCGGTCGTGGAAGTCCCCAGGATTACATCGT
CAACGAACGACTGCCGCCGGAGACATGTTTCCGAAACCACGACAAGAGCA
AGCCGGAGAACCTGATCCACACCGGCTGTCGGGTGGAGTTCGAGAACTAC
TGGCAACACTTGACCAAGATTTTTAACATCCTGGCCCTCGTACTCATTGG
CTTCGAGCTCCTGCTGAGTGTCATCTCTTGCCGCCTGTGCAACAGCATTC
GCAACGATGCTCGACGTTCTTACTTTTAGAAGCTTTCTAGACC

BS11206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12845-PA 663 Tsp42Ef-RA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ef-RA 1347 CG12845-RA 375..1039 16..680 3325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7027443..7027641 409..607 995 100 Plus
2R 25286936 2R 7026984..7027157 74..247 870 100 Plus
2R 25286936 2R 7027218..7027380 247..409 815 100 Plus
2R 25286936 2R 7027700..7027774 606..680 375 100 Plus
2R 25286936 2R 7025384..7025441 16..73 290 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:22:27 has no hits.

BS11206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:56 Download gff for BS11206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12845-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:10 Download gff for BS11206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12845-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:23:02 Download gff for BS11206.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 363..1039 3..680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:59 Download gff for BS11206.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 363..1039 3..680 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:59 Download gff for BS11206.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7025372..7025441 3..73 92 -> Plus
2R 7026984..7027157 74..247 100 -> Plus
2R 7027219..7027380 248..409 100 -> Plus
2R 7027444..7027641 410..607 100 -> Plus
2R 7027702..7027774 608..680 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:23:02 Download gff for BS11206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2914724..2914885 248..409 100 -> Plus
arm_2R 2912877..2912946 3..73 92 -> Plus
arm_2R 2914489..2914662 74..247 100 -> Plus
arm_2R 2914949..2915146 410..607 100 -> Plus
arm_2R 2915207..2915279 608..680 100   Plus

BS11206.3prime Sequence

693 bp (692 high quality bases) assembled on 2006-04-18

> BS11206.3prime
ATGGTCTAGAAAGCTTCTAAAAGTAAGAACGTCGAGCATCGTTGCGAATG
CTGTTGCACAGGCGGCAAGAGATGACACTCAGCAGGAGCTCGAAGCCAAT
GAGTACGAGGGCCAGGATGTTAAAAATCTTGGTCAAGTGTTGCCAGTAGT
TCTCGAACTCCACCCGACAGCCGGTGTGGATCAGGTTCTCCGGCTTGCTC
TTGTCGTGGTTTCGGAAACATGTCTCCGGCGGCAGTCGTTCGTTGACGAT
GTAATCCTGGGGACTTCCACGACCGCAGCACTGGAACCAGTTCTGGTACA
GCGACATGGCACCAGGGCTGTTCAGTTCCTCCTCCCAGGTGGCCTCCAGG
GCATTAGCCAGGTTGGAGGCCACCGTCTTCTCCTGGGTGATCAGCAAGTA
GACGACGGCGAACTGGGCAATGATGACCAGGCACAGGAAAATAATGAACG
TCACTGTGCAGCACACGTTCTCGCGCCAGGCGGACAGGTATCCCCAAAGG
ACAACCAGCAGGGCAGCAGCCCCGAGTCCCACGTAGCCGTAGGCCGTCAG
CTGACCGATCTCGTTTAGGTTGTAGGACACCGCCACATAGATGCCGAAGG
ATATCAGCACCAAGGCTAGCAGTGTGCAAAGTACGTCCAGGGCGTAAACA
ATCAGCTTCACACTCGACGTGGACGCCATGTCGACTGATAACT

BS11206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12845-PA 663 Tsp42Ef-RA 1..663 679..17 3315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ef-RA 1347 CG12845-RA 375..1039 680..16 3325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7027443..7027641 287..89 995 100 Minus
2R 25286936 2R 7026984..7027157 622..449 870 100 Minus
2R 25286936 2R 7027218..7027380 449..287 815 100 Minus
2R 25286936 2R 7027700..7027774 90..16 375 100 Minus
2R 25286936 2R 7025384..7025441 680..623 290 100 Minus
Blast to na_te.dros performed on 2015-02-03 17:57:13 has no hits.

BS11206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:55 Download gff for BS11206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12845-PA 1..663 17..679 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:08 Download gff for BS11206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12845-PA 1..663 17..679 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:39:05 Download gff for BS11206.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 363..1039 16..693 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:05:44 Download gff for BS11206.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 363..1039 16..693 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:05:44 Download gff for BS11206.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7025372..7025441 623..693 92 -> Minus
2R 7026984..7027157 449..622 100 -> Minus
2R 7027219..7027380 287..448 100 -> Minus
2R 7027444..7027641 89..286 100 -> Minus
2R 7027702..7027774 16..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:39:05 Download gff for BS11206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2914949..2915146 89..286 100 -> Minus
arm_2R 2915207..2915279 16..88 100   Minus
arm_2R 2912877..2912946 623..693 92 -> Minus
arm_2R 2914489..2914662 449..622 100 -> Minus
arm_2R 2914724..2914885 287..448 100 -> Minus

BS11206.complete Sequence

695 bp assembled on 2006-11-01

GenBank Submission: FJ636784

> BS11206.complete
GAAGTTATCAGTCGACATGGCGTCCACGTCGAGTGTGAAGCTGATTGTTT
ACGCCCTGGACGTACTTTGCACACTGCTAGCCTTGGTGCTGATATCCTTC
GGCATCTATGTGGCGGTGTCCTACAACCTAAACGAGATCGGTCAGCTGAC
GGCCTACGGCTACGTGGGACTCGGGGCTGCTGCCCTGCTGGTTGTCCTTT
GGGGATACCTGTCCGCCTGGCGCGAGAACGTGTGCTGCACAGTGACGTTC
ATTATTTTCCTGTGCCTGGTCATCATTGCCCAGTTCGCCGTCGTCTACTT
GCTGATCACCCAGGAGAAGACGGTGGCCTCCAACCTGGCTAATGCCCTGG
AGGCCACCTGGGAGGAGGAACTGAACAGCCCTGGTGCCATGTCGCTGTAC
CAGAACTGGTTCCAGTGCTGCGGTCGTGGAAGTCCCCAGGATTACATCGT
CAACGAACGACTGCCGCCGGAGACATGTTTCCGAAACCACGACAAGAGCA
AGCCGGAGAACCTGATCCACACCGGCTGTCGGGTGGAGTTCGAGAACTAC
TGGCAACACTTGACCAAGATTTTTAACATCCTGGCCCTCGTACTCATTGG
CTTCGAGCTCCTGCTGAGTGTCATCTCTTGCCGCCTGTGCAACAGCATTC
GCAACGATGCTCGACGTTCTTACTTTTAGAAGCTTTCTAGACCAT

BS11206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ef-RA 663 CG12845-PA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ef-RA 1347 CG12845-RA 375..1039 16..680 3325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7027443..7027641 409..607 995 100 Plus
2R 25286936 2R 7026984..7027157 74..247 870 100 Plus
2R 25286936 2R 7027218..7027380 247..409 815 100 Plus
2R 25286936 2R 7027700..7027774 606..680 375 100 Plus
2R 25286936 2R 7025384..7025441 16..73 290 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:55:10 has no hits.

BS11206.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:11 Download gff for BS11206.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:32 Download gff for BS11206.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 361..1037 3..680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:35 Download gff for BS11206.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 376..1038 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:11 Download gff for BS11206.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 361..1037 3..680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:03 Download gff for BS11206.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 376..1038 17..679 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:03 Download gff for BS11206.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7025385..7025441 17..73 100 -> Plus
2R 7026984..7027157 74..247 100 -> Plus
2R 7027219..7027380 248..409 100 -> Plus
2R 7027444..7027641 410..607 100 -> Plus
2R 7027702..7027773 608..679 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:35 Download gff for BS11206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2912890..2912946 17..73 100 -> Plus
arm_2R 2914489..2914662 74..247 100 -> Plus
arm_2R 2914724..2914885 248..409 100 -> Plus
arm_2R 2914949..2915146 410..607 100 -> Plus
arm_2R 2915207..2915278 608..679 100   Plus

BS11206.pep Sequence

Translation from 16 to 678

> BS11206.pep
MASTSSVKLIVYALDVLCTLLALVLISFGIYVAVSYNLNEIGQLTAYGYV
GLGAAALLVVLWGYLSAWRENVCCTVTFIIFLCLVIIAQFAVVYLLITQE
KTVASNLANALEATWEEELNSPGAMSLYQNWFQCCGRGSPQDYIVNERLP
PETCFRNHDKSKPENLIHTGCRVEFENYWQHLTKIFNILALVLIGFELLL
SVISCRLCNSIRNDARRSYF*

BS11206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ef-PA 220 CG12845-PA 1..220 1..220 1150 100 Plus
Tsp42Ei-PB 229 CG12843-PB 6..224 5..218 266 29 Plus
Tsp42Ei-PA 229 CG12843-PA 6..224 5..218 266 29 Plus
Tsp42Ea-PC 226 CG18817-PC 6..226 5..220 257 27.9 Plus
Tsp42Ea-PB 226 CG18817-PB 6..226 5..220 257 27.9 Plus