Clone BS11207 Report

Search the DGRC for BS11207

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG17786-RA
Protein status:BS11207.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11207.3prime Sequence

841 bp (802 high quality bases) assembled on 2006-04-18

> BS11207.3prime
ATGGTCTAGAAAGCTTTCACGAGATTGTGGAAAACGCTGGTTTCAGCTTA
CCCACCGTGCCCAATATCAGCCTGGTGGGTGTGGCCCGGCTGTCTGGGCC
CAGTTTGGCAGCTGCCACTTGGCTGTCATCGTGGCTGCCACCTCCACTAG
ACTGCCTTCCCCCGTGCCACATCAAACCCAAACTGTTGCCGTTGCCAATG
GTAGTGGCGGTGGCGGCGGCGGCGGTGGTGGTGCTGCTGCTATTGTTGTT
GCAATCCACGAGAAAATCCAAGGCTGTGGGCGTCGCATCCGTCAGATTCA
AATGCTCAAAGTTAAAGACAAGGCCCGATCCGCAGTTGTGGCTGCCAGCG
CTATCCAAGCCACTGTCGCTGGCTGCACCCGATCCAAATCCCGATCCCGA
TTCCGATTCCGCCTGATCTACTGCATTGCAGGTCTCGATCAGCTTGCGTG
ATATCTCATTGAGGCTCGCATCGAGCAGCGTCTCCGCCTGGGCGGAAATC
GAGGAGGAGGCGTTGCCCAGCTTCCCACCTCGCCAACAATTTCCAAACAG
ATCGTTGGCAATGTTGATTCCACTCAGGATATCCCCGTAGCCGGAATCAT
CGCTCAGGCATTGCGAAGGTGTGGCCACTGCGCTCGGATGACTCCGCTGG
GATCCGATTACTCCCACTTTTTCCGCCCGGCTGCTATCGCCGGTAATGGG
AGCGAATTCCTCGGTGGTCTCCTCCTGCAGGGCCAATGAGCTGGGCAGGC
TCTGGCTACAAATGGAGCTATCGCAGGAGCTGTCCGAGTGAGTGGATGAC
GTTGAGGAGGAGGACTCTCGGCTTCCGCCTCCTGGCTCGCT

BS11207.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-PA 1755 CG17786-RA 931..1755 841..17 4125 100 Minus
CG32159-PB 2559 CG32159-RB 1009..1036 238..211 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-RA 4088 CG17786-RA 1190..2014 841..17 4125 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24216705..24217529 17..841 4125 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:11:21 has no hits.

BS11207.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:57 Download gff for BS11207.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-PA 931..1755 17..841 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:12 Download gff for BS11207.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-PA 931..1755 17..841 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:16:06 Download gff for BS11207.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1190..2014 17..841 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:40 Download gff for BS11207.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1190..2014 17..841 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:40 Download gff for BS11207.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24216705..24217529 17..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:16:06 Download gff for BS11207.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20042427..20043251 17..841 100   Plus

BS11207.5prime Sequence

885 bp (868 high quality bases) assembled on 2006-04-18

> BS11207.5prime
GAAGTTATCAGTCGACATGAGATCGCATGTGGCCGTTTACAGGGCGCCAG
AATCAGCAGCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATAC
CACCAGCATCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGT
GTACAGGTTGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAG
CTCAGTCGGCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAAT
CAGCAGCGGATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTC
CAGTCACTTGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCC
TTAAAACATGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTG
GCTGTGCATGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCA
TCTCCAGCAACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATC
CTGTGACCAACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCT
TTCAAGTTGGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACC
ACCGGTGCTCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGG
ATCAGGCCACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCC
AGGAAGCGACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAA
AATTGAGGCGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACA
CCGCGAATGCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCAT
GATCATACGCACGGAGTCTGCTTCTGCCGAGAATG

BS11207.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-PA 1755 CG17786-RA 1..869 17..885 4320 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-RA 4088 CG17786-RA 260..1128 17..885 4330 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24217591..24218459 885..17 4330 99.9 Minus
Blast to na_te.dros performed 2015-02-04 05:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2463 422..545 172 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6825 394..518 140 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2424 444..514 139 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..6917 425..500 139 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6857 431..530 138 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6809 441..526 134 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6885 431..539 133 64 Plus
roo 9092 roo DM_ROO 9092bp 1082..1180 425..520 127 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2727 455..577 121 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2738..2832 411..500 120 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2392 444..518 116 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6528..6571 441..484 112 72.7 Plus
roo 9092 roo DM_ROO 9092bp 1088..1154 413..479 110 62.7 Plus

BS11207.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:58 Download gff for BS11207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:13 Download gff for BS11207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:15:16 Download gff for BS11207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 256..1128 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:47:01 Download gff for BS11207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 256..1128 9..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:47:01 Download gff for BS11207.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24217591..24218463 9..885 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:15:16 Download gff for BS11207.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20043313..20044185 9..885 99   Minus

BS11207.complete Sequence

1787 bp assembled on 2007-10-31

GenBank Submission: FJ636785

> BS11207.complete
GAAGTTATCAGTCGACATGAGATCGCATGTGGCCGTTTACAGGGCGCCAG
AATCAGCAGCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATAC
CACCAGCATCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGT
GTACAGGTTGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAG
CTCAGTCGGCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAAT
CAGCAGCGGATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTC
CAGTCACTTGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCC
TTAAAACATGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTG
GCTGTGCATGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCA
TCTCCAGCAACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATC
CTGTGACCAACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCT
TTCAAGTTGGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACC
ACCGGTGCTCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGG
ATCAGGCCACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCC
AGGAAGCGACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAA
AATTGAGGCGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACA
CCGCGAATGCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCAT
GATCATACGCACGGAGTCTGCTTCTGCCGAGAATGTGACCCACTTCGTTC
GCTTTGGGATTACCCGCTCCGGCGATCGCTTTCCGATGCCTCTTCCAGCG
AGCCAGGAGGCGGAAGCCGAGAGTCCTCCTCCTCAACGTCATCCACTCAC
TCGGACAGCTCCTGCGATAGCTCCATTTGTAGCCAGAGCCTGCCCAGCTC
ATTGGCCCTGCAGGAGGAGACCACCGAGGAATTCGCTCCCATTACCGGCG
ATAGCAGCCGGGCGGAAAAAGTGGGAGTAATCGGATCCCAGCGGAGTCAT
CCGAGCGCAGTGGCCACACCTTCGCAATGCCTGAGCGATGATTCCGGCTA
CGGGGATATCCTGAGTGGAATCAACATTGCCAACGATCTGTTTGGAAATT
GTTGGCGAGGTGGGAAGCTGGGCAACGCCTCCTCCTCGATTTCCGCCCAG
GCGGAGACGCTGCTCGATGCGAGCCTCAATGAGATATCACGCAAGCTGAT
CGAGACCTGCAATGCAGTAGATCAGGCGGAATCGGAATCGGGATCGGGAT
TTGGATCGGGTGCAGCCAGCGACAGTGGCTTGGATAGCGCTGGCAGCCAC
AACTGCGGATCGGGCCTTGTCTTTAACTTTGAGCATTTGAATCTGACGGA
TGCGACGCCCACAGCCTTGGATTTTCTCGTGGATTGCAACAACAATAGCA
GCAGCACCACCACCGCCGCCGCCGCCACCGCCACTACCATTGGCAACGGC
AACAGTTTGGGTTTGATGTGGCACGGGGGAAGGCAGTCTAGTGGAGGTGG
CAGCCACGATGACAGCCAAGTGGCAGCTGCCAAACTGGGCCCAGACAGCC
GGGCCACACCCACCAGGCTGATATTGGGCACGGTGGGTAAGCTGAAACCA
GCGTTTTCCACAATCTCGTGAAAGCTTTCTAGACCAT

BS11207.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-RA 1755 CG17786-PA 1..1755 17..1771 8760 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-RA 4088 CG17786-RA 260..2014 17..1771 8760 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24216705..24218459 1771..17 8760 99.9 Minus
Blast to na_te.dros performed 2014-11-27 16:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2463 422..545 172 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6825 394..518 140 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2424 444..514 139 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6857 431..530 138 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6809 441..526 134 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6885 431..539 133 64 Plus
roo 9092 roo DM_ROO 9092bp 1082..1180 425..520 127 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2727 455..577 121 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2738..2832 411..500 120 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2392 444..518 116 63.2 Plus

BS11207.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:45 Download gff for BS11207.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1..1755 17..1771 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:30 Download gff for BS11207.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 254..2012 9..1771 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:03 Download gff for BS11207.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 260..2013 17..1770 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:11 Download gff for BS11207.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 258..2011 17..1770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:27 Download gff for BS11207.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 260..2013 17..1770 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:27 Download gff for BS11207.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24216706..24218459 17..1770 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:03 Download gff for BS11207.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20042428..20044181 17..1770 99   Minus

BS11207.pep Sequence

Translation from 16 to 1770

> BS11207.pep
MRSHVAVYRAPESAAPPPPPPNYASLRYHQHPLSHWPGSQHPAPVYRLHH
GPPSAPPPNWAAQSAGQPPQPVGYGVVNQQRINECAGIPLISNASSHLSP
AQRQRLLRKSALKTCPTWPPGGATMSQLAVHAQGMPLLQQNGKHHLQQQQ
MQHHQPLHHHHPVTNNWSGYQPMSSQPAFKLADKSRALRYQNSAPPVLSS
QEKTPNNAAGQDQATSPAETCLPRIIKPRKRRKKDRKPGNGVLLKIEADM
QPKMSNPLDGYTANAGASYHLPSGILQHDHTHGVCFCRECDPLRSLWDYP
LRRSLSDASSSEPGGGSRESSSSTSSTHSDSSCDSSICSQSLPSSLALQE
ETTEEFAPITGDSSRAEKVGVIGSQRSHPSAVATPSQCLSDDSGYGDILS
GINIANDLFGNCWRGGKLGNASSSISAQAETLLDASLNEISRKLIETCNA
VDQAESESGSGFGSGAASDSGLDSAGSHNCGSGLVFNFEHLNLTDATPTA
LDFLVDCNNNSSSTTTAAAATATTIGNGNSLGLMWHGGRQSSGGGSHDDS
QVAAAKLGPDSRATPTRLILGTVGKLKPAFSTIS*

BS11207.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-PA 584 CG17786-PA 1..584 1..584 3105 100 Plus