Clone Sequence Records
BS11207.3prime Sequence
841 bp (802 high quality bases) assembled on 2006-04-18
> BS11207.3prime
ATGGTCTAGAAAGCTTTCACGAGATTGTGGAAAACGCTGGTTTCAGCTTA
CCCACCGTGCCCAATATCAGCCTGGTGGGTGTGGCCCGGCTGTCTGGGCC
CAGTTTGGCAGCTGCCACTTGGCTGTCATCGTGGCTGCCACCTCCACTAG
ACTGCCTTCCCCCGTGCCACATCAAACCCAAACTGTTGCCGTTGCCAATG
GTAGTGGCGGTGGCGGCGGCGGCGGTGGTGGTGCTGCTGCTATTGTTGTT
GCAATCCACGAGAAAATCCAAGGCTGTGGGCGTCGCATCCGTCAGATTCA
AATGCTCAAAGTTAAAGACAAGGCCCGATCCGCAGTTGTGGCTGCCAGCG
CTATCCAAGCCACTGTCGCTGGCTGCACCCGATCCAAATCCCGATCCCGA
TTCCGATTCCGCCTGATCTACTGCATTGCAGGTCTCGATCAGCTTGCGTG
ATATCTCATTGAGGCTCGCATCGAGCAGCGTCTCCGCCTGGGCGGAAATC
GAGGAGGAGGCGTTGCCCAGCTTCCCACCTCGCCAACAATTTCCAAACAG
ATCGTTGGCAATGTTGATTCCACTCAGGATATCCCCGTAGCCGGAATCAT
CGCTCAGGCATTGCGAAGGTGTGGCCACTGCGCTCGGATGACTCCGCTGG
GATCCGATTACTCCCACTTTTTCCGCCCGGCTGCTATCGCCGGTAATGGG
AGCGAATTCCTCGGTGGTCTCCTCCTGCAGGGCCAATGAGCTGGGCAGGC
TCTGGCTACAAATGGAGCTATCGCAGGAGCTGTCCGAGTGAGTGGATGAC
GTTGAGGAGGAGGACTCTCGGCTTCCGCCTCCTGGCTCGCT
BS11207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-PA | 1755 | CG17786-RA | 931..1755 | 841..17 | 4125 | 100 | Minus |
CG32159-PB | 2559 | CG32159-RB | 1009..1036 | 238..211 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-RA | 4088 | CG17786-RA | 1190..2014 | 841..17 | 4125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24216705..24217529 | 17..841 | 4125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:11:21 has no hits.
BS11207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:57 Download gff for
BS11207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-PA | 931..1755 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:12 Download gff for
BS11207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-PA | 931..1755 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:16:06 Download gff for
BS11207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1190..2014 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:40 Download gff for
BS11207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1190..2014 | 17..841 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:40 Download gff for
BS11207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24216705..24217529 | 17..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:16:06 Download gff for
BS11207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20042427..20043251 | 17..841 | 100 | | Plus |
BS11207.5prime Sequence
885 bp (868 high quality bases) assembled on 2006-04-18
> BS11207.5prime
GAAGTTATCAGTCGACATGAGATCGCATGTGGCCGTTTACAGGGCGCCAG
AATCAGCAGCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATAC
CACCAGCATCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGT
GTACAGGTTGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAG
CTCAGTCGGCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAAT
CAGCAGCGGATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTC
CAGTCACTTGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCC
TTAAAACATGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTG
GCTGTGCATGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCA
TCTCCAGCAACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATC
CTGTGACCAACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCT
TTCAAGTTGGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACC
ACCGGTGCTCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGG
ATCAGGCCACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCC
AGGAAGCGACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAA
AATTGAGGCGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACA
CCGCGAATGCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCAT
GATCATACGCACGGAGTCTGCTTCTGCCGAGAATG
BS11207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-PA | 1755 | CG17786-RA | 1..869 | 17..885 | 4320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-RA | 4088 | CG17786-RA | 260..1128 | 17..885 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24217591..24218459 | 885..17 | 4330 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-04 05:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2463 | 422..545 | 172 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6825 | 394..518 | 140 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2424 | 444..514 | 139 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6917 | 425..500 | 139 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6857 | 431..530 | 138 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6809 | 441..526 | 134 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6885 | 431..539 | 133 | 64 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1180 | 425..520 | 127 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2727 | 455..577 | 121 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2738..2832 | 411..500 | 120 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2392 | 444..518 | 116 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6528..6571 | 441..484 | 112 | 72.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1088..1154 | 413..479 | 110 | 62.7 | Plus |
BS11207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:01:58 Download gff for
BS11207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:13 Download gff for
BS11207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:15:16 Download gff for
BS11207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 256..1128 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:47:01 Download gff for
BS11207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 256..1128 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:47:01 Download gff for
BS11207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24217591..24218463 | 9..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:15:16 Download gff for
BS11207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20043313..20044185 | 9..885 | 99 | | Minus |
BS11207.complete Sequence
1787 bp assembled on 2007-10-31
GenBank Submission: FJ636785
> BS11207.complete
GAAGTTATCAGTCGACATGAGATCGCATGTGGCCGTTTACAGGGCGCCAG
AATCAGCAGCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATAC
CACCAGCATCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGT
GTACAGGTTGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAG
CTCAGTCGGCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAAT
CAGCAGCGGATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTC
CAGTCACTTGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCC
TTAAAACATGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTG
GCTGTGCATGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCA
TCTCCAGCAACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATC
CTGTGACCAACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCT
TTCAAGTTGGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACC
ACCGGTGCTCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGG
ATCAGGCCACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCC
AGGAAGCGACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAA
AATTGAGGCGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACA
CCGCGAATGCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCAT
GATCATACGCACGGAGTCTGCTTCTGCCGAGAATGTGACCCACTTCGTTC
GCTTTGGGATTACCCGCTCCGGCGATCGCTTTCCGATGCCTCTTCCAGCG
AGCCAGGAGGCGGAAGCCGAGAGTCCTCCTCCTCAACGTCATCCACTCAC
TCGGACAGCTCCTGCGATAGCTCCATTTGTAGCCAGAGCCTGCCCAGCTC
ATTGGCCCTGCAGGAGGAGACCACCGAGGAATTCGCTCCCATTACCGGCG
ATAGCAGCCGGGCGGAAAAAGTGGGAGTAATCGGATCCCAGCGGAGTCAT
CCGAGCGCAGTGGCCACACCTTCGCAATGCCTGAGCGATGATTCCGGCTA
CGGGGATATCCTGAGTGGAATCAACATTGCCAACGATCTGTTTGGAAATT
GTTGGCGAGGTGGGAAGCTGGGCAACGCCTCCTCCTCGATTTCCGCCCAG
GCGGAGACGCTGCTCGATGCGAGCCTCAATGAGATATCACGCAAGCTGAT
CGAGACCTGCAATGCAGTAGATCAGGCGGAATCGGAATCGGGATCGGGAT
TTGGATCGGGTGCAGCCAGCGACAGTGGCTTGGATAGCGCTGGCAGCCAC
AACTGCGGATCGGGCCTTGTCTTTAACTTTGAGCATTTGAATCTGACGGA
TGCGACGCCCACAGCCTTGGATTTTCTCGTGGATTGCAACAACAATAGCA
GCAGCACCACCACCGCCGCCGCCGCCACCGCCACTACCATTGGCAACGGC
AACAGTTTGGGTTTGATGTGGCACGGGGGAAGGCAGTCTAGTGGAGGTGG
CAGCCACGATGACAGCCAAGTGGCAGCTGCCAAACTGGGCCCAGACAGCC
GGGCCACACCCACCAGGCTGATATTGGGCACGGTGGGTAAGCTGAAACCA
GCGTTTTCCACAATCTCGTGAAAGCTTTCTAGACCAT
BS11207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-RA | 1755 | CG17786-PA | 1..1755 | 17..1771 | 8760 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-RA | 4088 | CG17786-RA | 260..2014 | 17..1771 | 8760 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24216705..24218459 | 1771..17 | 8760 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-27 16:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2463 | 422..545 | 172 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6825 | 394..518 | 140 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2424 | 444..514 | 139 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6857 | 431..530 | 138 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6809 | 441..526 | 134 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6885 | 431..539 | 133 | 64 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1180 | 425..520 | 127 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2727 | 455..577 | 121 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2738..2832 | 411..500 | 120 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2392 | 444..518 | 116 | 63.2 | Plus |
BS11207.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:45 Download gff for
BS11207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1..1755 | 17..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:30 Download gff for
BS11207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 254..2012 | 9..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:03 Download gff for
BS11207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 260..2013 | 17..1770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:11 Download gff for
BS11207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 258..2011 | 17..1770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:27 Download gff for
BS11207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 260..2013 | 17..1770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:27 Download gff for
BS11207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24216706..24218459 | 17..1770 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:03 Download gff for
BS11207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20042428..20044181 | 17..1770 | 99 | | Minus |
BS11207.pep Sequence
Translation from 16 to 1770
> BS11207.pep
MRSHVAVYRAPESAAPPPPPPNYASLRYHQHPLSHWPGSQHPAPVYRLHH
GPPSAPPPNWAAQSAGQPPQPVGYGVVNQQRINECAGIPLISNASSHLSP
AQRQRLLRKSALKTCPTWPPGGATMSQLAVHAQGMPLLQQNGKHHLQQQQ
MQHHQPLHHHHPVTNNWSGYQPMSSQPAFKLADKSRALRYQNSAPPVLSS
QEKTPNNAAGQDQATSPAETCLPRIIKPRKRRKKDRKPGNGVLLKIEADM
QPKMSNPLDGYTANAGASYHLPSGILQHDHTHGVCFCRECDPLRSLWDYP
LRRSLSDASSSEPGGGSRESSSSTSSTHSDSSCDSSICSQSLPSSLALQE
ETTEEFAPITGDSSRAEKVGVIGSQRSHPSAVATPSQCLSDDSGYGDILS
GINIANDLFGNCWRGGKLGNASSSISAQAETLLDASLNEISRKLIETCNA
VDQAESESGSGFGSGAASDSGLDSAGSHNCGSGLVFNFEHLNLTDATPTA
LDFLVDCNNNSSSTTTAAAATATTIGNGNSLGLMWHGGRQSSGGGSHDDS
QVAAAKLGPDSRATPTRLILGTVGKLKPAFSTIS*
BS11207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-PA | 584 | CG17786-PA | 1..584 | 1..584 | 3105 | 100 | Plus |