Clone Sequence Records
BS11208.5prime Sequence
645 bp (644 high quality bases) assembled on 2006-04-18
> BS11208.5prime
GAAGTTATCAGTCGACATGGGGGCTTATCGGTACATGCAGGAACTTTATA
GGAAGAAGCAGAGCGATGTGATGCGCTACTTGCTACGTATTCGCGTTTGG
CAATACCGCCAACTAACGAAATTGCATCGTTCGCCAAGACCTACTCGCCC
GGATAAAGCAAGACGTTTAGGATACAGAGCCAAACAGGGGTTCGTGATTT
ATAGAATCCGTGTTCGCCGCGGAGGTCGCAAGCGTCCAGTTCCCAAAGGA
TGCACTTATGGCAAGCCGAAGAGTCATGGTGTAAACCAGTTAAAACCATA
TCGTGGTTTGCAATCCATTGCTGAGGAACGTGTTGGTCGTAGACTTGGCG
GCTTGCGAGTTTTGAACTCGTATTGGATTGCGCAAGATGCTTCTTATAAA
TATTTTGAAGTAATCTTAATTGATACTCATCACAGTGCTATTCGTCGTGA
TCCAAAAATTAACTGGATCTGCAAGCATGTCCACAAGCATCGTGAATTGC
GTGGCCTTACATCAGCTGGAAAAAGTTCGCGTGGCATTGGCAAGGGATAT
AGATACTCCCAGACAATTGGTGGATCTAGGCGTGCTGCTTGGAAGCGCAA
GAACCGTGAGCACATGCACAGAAAACGATAAAAGCTTTCTAGACC
BS11208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:04:20 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL15-RI | 950 | CG17420-RI | 288..903 | 17..632 | 3080 | 100 | Plus |
RpL15-RH | 882 | CG17420-RH | 220..835 | 17..632 | 3080 | 100 | Plus |
RpL15-RG | 694 | CG17420-RG | 32..647 | 17..632 | 3080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27267610..27267919 | 17..326 | 1550 | 100 | Plus |
3L | 28110227 | 3L | 27268090..27268398 | 324..632 | 1545 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3070..3129 | 420..359 | 115 | 69.4 | Minus |
BS11208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:47:52 Download gff for
BS11208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 22..649 | 8..637 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:50 Download gff for
BS11208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 22..649 | 8..637 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:50 Download gff for
BS11208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27268092..27268400 | 326..637 | 99 | | Plus |
3L | 27267607..27267918 | 14..325 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:47:52 Download gff for
BS11208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2398143..2398454 | 14..325 | 99 | -> | Plus |
3LHet | 2398628..2398936 | 326..637 | 99 | | Plus |
BS11208.3prime Sequence
645 bp (644 high quality bases) assembled on 2006-04-18
> BS11208.3prime
ATGGTCTAGAAAGCTTTTATCGTTTTCTGTGCATGTGCTCACGGTTCTTG
CGCTTCCAAGCAGCACGCCTAGATCCACCAATTGTCTGGGAGTATCTATA
TCCCTTGCCAATGCCACGCGAACTTTTTCCAGCTGATGTAAGGCCACGCA
ATTCACGATGCTTGTGGACATGCTTGCAGATCCAGTTAATTTTTGGATCA
CGACGAATAGCACTGTGATGAGTATCAATTAAGATTACTTCAAAATATTT
ATAAGAAGCATCTTGCGCAATCCAATACGAGTTCAAAACTCGCAAGCCGC
CAAGTCTACGACCAACACGTTCCTCAGCAATGGATTGCAAACCACGATAT
GGTTTTAACTGGTTTACACCATGACTCTTCGGCTTGCCATAAGTGCATCC
TTTGGGAACTGGACGCTTGCGACCTCCGCGGCGAACACGGATTCTATAAA
TCACGAACCCCTGTTTGGCTCTGTATCCTAAACGTCTTGCTTTATCCGGG
CGAGTAGGTCTTGGCGAACGATGCAATTTCGTTAGTTGGCGGTATTGCCA
AACGCGAATACGTAGCAAGTAGCGCATCACATCGCTCTGCTTCTTCCTAT
AAAGTTCCTGCATGTACCGATAAGCCCCCATGTCGACTGATAACT
BS11208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:04:19 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL15-RI | 950 | CG17420-RI | 288..903 | 631..16 | 3080 | 100 | Minus |
RpL15-RH | 882 | CG17420-RH | 220..835 | 631..16 | 3080 | 100 | Minus |
RpL15-RG | 694 | CG17420-RG | 32..647 | 631..16 | 3080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27267610..27267919 | 631..322 | 1550 | 100 | Minus |
3L | 28110227 | 3L | 27268090..27268398 | 324..16 | 1545 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3070..3129 | 228..289 | 115 | 69.4 | Plus |
BS11208.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:16:04 Download gff for
BS11208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 22..649 | 11..640 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:33 Download gff for
BS11208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 22..649 | 11..640 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:33 Download gff for
BS11208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27267607..27267918 | 323..634 | 99 | -> | Minus |
3L | 27268092..27268400 | 11..322 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:16:04 Download gff for
BS11208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2398143..2398454 | 323..634 | 99 | -> | Minus |
3LHet | 2398628..2398936 | 11..322 | 99 | | Minus |
BS11208.complete Sequence
647 bp assembled on 2006-11-01
> BS11208.complete
GAAGTTATCAGTCGACATGGGGGCTTATCGGTACATGCAGGAACTTTATA
GGAAGAAGCAGAGCGATGTGATGCGCTACTTGCTACGTATTCGCGTTTGG
CAATACCGCCAACTAACGAAATTGCATCGTTCGCCAAGACCTACTCGCCC
GGATAAAGCAAGACGTTTAGGATACAGAGCCAAACAGGGGTTCGTGATTT
ATAGAATCCGTGTTCGCCGCGGAGGTCGCAAGCGTCCAGTTCCCAAAGGA
TGCACTTATGGCAAGCCGAAGAGTCATGGTGTAAACCAGTTAAAACCATA
TCGTGGTTTGCAATCCATTGCTGAGGAACGTGTTGGTCGTAGACTTGGCG
GCTTGCGAGTTTTGAACTCGTATTGGATTGCGCAAGATGCTTCTTATAAA
TATTTTGAAGTAATCTTAATTGATACTCATCACAGTGCTATTCGTCGTGA
TCCAAAAATTAACTGGATCTGCAAGCATGTCCACAAGCATCGTGAATTGC
GTGGCCTTACATCAGCTGGAAAAAGTTCGCGTGGCATTGGCAAGGGATAT
AGATACTCCCAGACAATTGGTGGATCTAGGCGTGCTGCTTGGAAGCGCAA
GAACCGTGAGCACATGCACAGAAAACGATAAAAGCTTTCTAGACCAT
BS11208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL15-RI | 615 | CG17420-PI | 1..615 | 17..631 | 3075 | 100 | Plus |
RpL15-RH | 615 | CG17420-PH | 1..615 | 17..631 | 3075 | 100 | Plus |
RpL15-RG | 615 | CG17420-PG | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL15-RI | 950 | CG17420-RI | 288..903 | 17..632 | 3080 | 100 | Plus |
RpL15-RH | 882 | CG17420-RH | 220..835 | 17..632 | 3080 | 100 | Plus |
RpL15-RG | 694 | CG17420-RG | 32..647 | 17..632 | 3080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27267610..27267919 | 17..326 | 1550 | 100 | Plus |
3L | 28110227 | 3L | 27268090..27268398 | 324..632 | 1545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3070..3129 | 420..359 | 115 | 69.4 | Minus |
BS11208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:12 Download gff for
BS11208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RB | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:33 Download gff for
BS11208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RB | 347..967 | 14..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:57 Download gff for
BS11208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 32..644 | 17..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:12 Download gff for
BS11208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RB | 347..967 | 14..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:28 Download gff for
BS11208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 32..644 | 17..629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:28 Download gff for
BS11208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27267610..27267918 | 17..325 | 100 | -> | Plus |
3L | 27268092..27268395 | 326..629 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:57 Download gff for
BS11208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2398146..2398454 | 17..325 | 100 | -> | Plus |
3LHet | 2398628..2398931 | 326..629 | 100 | | Plus |
BS11208.pep Sequence
Translation from 16 to 630
> BS11208.pep
MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARR
LGYRAKQGFVIYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQS
IAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHHSAIRRDPKINW
ICKHVHKHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHM
HRKR*
BS11208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL15-PI | 204 | CG17420-PI | 1..204 | 1..204 | 1095 | 100 | Plus |
RpL15-PH | 204 | CG17420-PH | 1..204 | 1..204 | 1095 | 100 | Plus |
RpL15-PG | 204 | CG17420-PG | 1..204 | 1..204 | 1095 | 100 | Plus |
RpL15-PF | 204 | CG17420-PF | 1..204 | 1..204 | 1095 | 100 | Plus |
RpL15-PE | 204 | CG17420-PE | 1..204 | 1..204 | 1095 | 100 | Plus |