Clone BS11208 Report

Search the DGRC for BS11208

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptRpL15-RE
Protein status:BS11208.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11208.5prime Sequence

645 bp (644 high quality bases) assembled on 2006-04-18

> BS11208.5prime
GAAGTTATCAGTCGACATGGGGGCTTATCGGTACATGCAGGAACTTTATA
GGAAGAAGCAGAGCGATGTGATGCGCTACTTGCTACGTATTCGCGTTTGG
CAATACCGCCAACTAACGAAATTGCATCGTTCGCCAAGACCTACTCGCCC
GGATAAAGCAAGACGTTTAGGATACAGAGCCAAACAGGGGTTCGTGATTT
ATAGAATCCGTGTTCGCCGCGGAGGTCGCAAGCGTCCAGTTCCCAAAGGA
TGCACTTATGGCAAGCCGAAGAGTCATGGTGTAAACCAGTTAAAACCATA
TCGTGGTTTGCAATCCATTGCTGAGGAACGTGTTGGTCGTAGACTTGGCG
GCTTGCGAGTTTTGAACTCGTATTGGATTGCGCAAGATGCTTCTTATAAA
TATTTTGAAGTAATCTTAATTGATACTCATCACAGTGCTATTCGTCGTGA
TCCAAAAATTAACTGGATCTGCAAGCATGTCCACAAGCATCGTGAATTGC
GTGGCCTTACATCAGCTGGAAAAAGTTCGCGTGGCATTGGCAAGGGATAT
AGATACTCCCAGACAATTGGTGGATCTAGGCGTGCTGCTTGGAAGCGCAA
GAACCGTGAGCACATGCACAGAAAACGATAAAAGCTTTCTAGACC

BS11208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:04:20 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpL15-RI 950 CG17420-RI 288..903 17..632 3080 100 Plus
RpL15-RH 882 CG17420-RH 220..835 17..632 3080 100 Plus
RpL15-RG 694 CG17420-RG 32..647 17..632 3080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27267610..27267919 17..326 1550 100 Plus
3L 28110227 3L 27268090..27268398 324..632 1545 100 Plus
Blast to na_te.dros performed 2015-02-11 16:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3070..3129 420..359 115 69.4 Minus

BS11208.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:47:52 Download gff for BS11208.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 22..649 8..637 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:50 Download gff for BS11208.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 22..649 8..637 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:50 Download gff for BS11208.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 27268092..27268400 326..637 99   Plus
3L 27267607..27267918 14..325 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:47:52 Download gff for BS11208.5prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 2398143..2398454 14..325 99 -> Plus
3LHet 2398628..2398936 326..637 99   Plus

BS11208.3prime Sequence

645 bp (644 high quality bases) assembled on 2006-04-18

> BS11208.3prime
ATGGTCTAGAAAGCTTTTATCGTTTTCTGTGCATGTGCTCACGGTTCTTG
CGCTTCCAAGCAGCACGCCTAGATCCACCAATTGTCTGGGAGTATCTATA
TCCCTTGCCAATGCCACGCGAACTTTTTCCAGCTGATGTAAGGCCACGCA
ATTCACGATGCTTGTGGACATGCTTGCAGATCCAGTTAATTTTTGGATCA
CGACGAATAGCACTGTGATGAGTATCAATTAAGATTACTTCAAAATATTT
ATAAGAAGCATCTTGCGCAATCCAATACGAGTTCAAAACTCGCAAGCCGC
CAAGTCTACGACCAACACGTTCCTCAGCAATGGATTGCAAACCACGATAT
GGTTTTAACTGGTTTACACCATGACTCTTCGGCTTGCCATAAGTGCATCC
TTTGGGAACTGGACGCTTGCGACCTCCGCGGCGAACACGGATTCTATAAA
TCACGAACCCCTGTTTGGCTCTGTATCCTAAACGTCTTGCTTTATCCGGG
CGAGTAGGTCTTGGCGAACGATGCAATTTCGTTAGTTGGCGGTATTGCCA
AACGCGAATACGTAGCAAGTAGCGCATCACATCGCTCTGCTTCTTCCTAT
AAAGTTCCTGCATGTACCGATAAGCCCCCATGTCGACTGATAACT

BS11208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:04:19 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
RpL15-RI 950 CG17420-RI 288..903 631..16 3080 100 Minus
RpL15-RH 882 CG17420-RH 220..835 631..16 3080 100 Minus
RpL15-RG 694 CG17420-RG 32..647 631..16 3080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27267610..27267919 631..322 1550 100 Minus
3L 28110227 3L 27268090..27268398 324..16 1545 100 Minus
Blast to na_te.dros performed 2015-02-12 11:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3070..3129 228..289 115 69.4 Plus

BS11208.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:16:04 Download gff for BS11208.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 22..649 11..640 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:33 Download gff for BS11208.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 22..649 11..640 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:33 Download gff for BS11208.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 27267607..27267918 323..634 99 -> Minus
3L 27268092..27268400 11..322 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:16:04 Download gff for BS11208.3prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 2398143..2398454 323..634 99 -> Minus
3LHet 2398628..2398936 11..322 99   Minus

BS11208.complete Sequence

647 bp assembled on 2006-11-01

> BS11208.complete
GAAGTTATCAGTCGACATGGGGGCTTATCGGTACATGCAGGAACTTTATA
GGAAGAAGCAGAGCGATGTGATGCGCTACTTGCTACGTATTCGCGTTTGG
CAATACCGCCAACTAACGAAATTGCATCGTTCGCCAAGACCTACTCGCCC
GGATAAAGCAAGACGTTTAGGATACAGAGCCAAACAGGGGTTCGTGATTT
ATAGAATCCGTGTTCGCCGCGGAGGTCGCAAGCGTCCAGTTCCCAAAGGA
TGCACTTATGGCAAGCCGAAGAGTCATGGTGTAAACCAGTTAAAACCATA
TCGTGGTTTGCAATCCATTGCTGAGGAACGTGTTGGTCGTAGACTTGGCG
GCTTGCGAGTTTTGAACTCGTATTGGATTGCGCAAGATGCTTCTTATAAA
TATTTTGAAGTAATCTTAATTGATACTCATCACAGTGCTATTCGTCGTGA
TCCAAAAATTAACTGGATCTGCAAGCATGTCCACAAGCATCGTGAATTGC
GTGGCCTTACATCAGCTGGAAAAAGTTCGCGTGGCATTGGCAAGGGATAT
AGATACTCCCAGACAATTGGTGGATCTAGGCGTGCTGCTTGGAAGCGCAA
GAACCGTGAGCACATGCACAGAAAACGATAAAAGCTTTCTAGACCAT

BS11208.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
RpL15-RI 615 CG17420-PI 1..615 17..631 3075 100 Plus
RpL15-RH 615 CG17420-PH 1..615 17..631 3075 100 Plus
RpL15-RG 615 CG17420-PG 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpL15-RI 950 CG17420-RI 288..903 17..632 3080 100 Plus
RpL15-RH 882 CG17420-RH 220..835 17..632 3080 100 Plus
RpL15-RG 694 CG17420-RG 32..647 17..632 3080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27267610..27267919 17..326 1550 100 Plus
3L 28110227 3L 27268090..27268398 324..632 1545 100 Plus
Blast to na_te.dros performed 2014-11-28 00:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3070..3129 420..359 115 69.4 Minus

BS11208.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:12 Download gff for BS11208.complete
Subject Subject Range Query Range Percent Splice Strand
RpL15-RB 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:33 Download gff for BS11208.complete
Subject Subject Range Query Range Percent Splice Strand
RpL15-RB 347..967 14..637 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:57 Download gff for BS11208.complete
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 32..644 17..629 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:12 Download gff for BS11208.complete
Subject Subject Range Query Range Percent Splice Strand
RpL15-RB 347..967 14..637 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:28 Download gff for BS11208.complete
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 32..644 17..629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:28 Download gff for BS11208.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27267610..27267918 17..325 100 -> Plus
3L 27268092..27268395 326..629 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:57 Download gff for BS11208.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 2398146..2398454 17..325 100 -> Plus
3LHet 2398628..2398931 326..629 100   Plus

BS11208.pep Sequence

Translation from 16 to 630

> BS11208.pep
MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARR
LGYRAKQGFVIYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQS
IAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHHSAIRRDPKINW
ICKHVHKHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHM
HRKR*

BS11208.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
RpL15-PI 204 CG17420-PI 1..204 1..204 1095 100 Plus
RpL15-PH 204 CG17420-PH 1..204 1..204 1095 100 Plus
RpL15-PG 204 CG17420-PG 1..204 1..204 1095 100 Plus
RpL15-PF 204 CG17420-PF 1..204 1..204 1095 100 Plus
RpL15-PE 204 CG17420-PE 1..204 1..204 1095 100 Plus