Clone Sequence Records
BS11209.3prime Sequence
477 bp (476 high quality bases) assembled on 2006-04-18
> BS11209.3prime
ATGGTCTAGAAAGCTTCTATATCGTTTGGGTGGCCACCTCCCGCTGGCGA
CTGCGCCGATAGTTTCCATAGGCCTCCAGTCCGTTGATGCAAAATGCTGT
CAGGCCAAAGAACGCCGCCGCCGTATAGGCTCCAATATCCAGGGAGAGTA
CGAGTCCGGAGGCCGTGAAGTAGGCCAGGGCCAATGAGGAGTGCACCGCC
AGGGACCAGAGCGTGGGATCGCATCGGCAGAACTGGCGCTGCCACAACCG
GAGATACCTGGCCAGGAGCAGGCAGCCGGTGGCCACGAATCCGATGGTGA
CTACGGCCAGGTAGAAACTGCCGCGGAAATTGCTCACGCGCACCGGTCCG
CAGATGATGCACAATATTCCAACAAAGCTGCACAGCAAACAGGCCAGCTT
GCACAGGCCCGGCATGCTGAGCAGGTATTTGCGATCGTAGTCCTGGGTTC
CCGTCAACGACATGTCGACTGATAACT
BS11209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-PA | 447 | CG12730-RA | 1..447 | 463..17 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-RB | 1892 | CG12730-RB | 814..1261 | 463..16 | 2240 | 100 | Minus |
CG12730-RA | 1241 | CG12730-RA | 163..610 | 463..16 | 2240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5517571..5517844 | 386..113 | 1370 | 100 | Minus |
X | 23542271 | X | 5518043..5518140 | 113..16 | 490 | 100 | Minus |
X | 23542271 | X | 5517421..5517498 | 463..386 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 20:23:45 has no hits.
BS11209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:01 Download gff for
BS11209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:14 Download gff for
BS11209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:39:44 Download gff for
BS11209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 159..613 | 11..467 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:52:35 Download gff for
BS11209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 159..613 | 11..467 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:52:35 Download gff for
BS11209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5517417..5517498 | 386..467 | 97 | -> | Minus |
X | 5517572..5517844 | 113..385 | 100 | -> | Minus |
X | 5518044..5518143 | 11..112 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:39:44 Download gff for
BS11209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5412077..5412176 | 11..112 | 98 | | Minus |
arm_X | 5411450..5411531 | 386..467 | 97 | -> | Minus |
arm_X | 5411605..5411877 | 113..385 | 100 | -> | Minus |
BS11209.5prime Sequence
477 bp (476 high quality bases) assembled on 2006-04-18
> BS11209.5prime
GAAGTTATCAGTCGACATGTCGTTGACGGGAACCCAGGACTACGATCGCA
AATACCTGCTCAGCATGCCGGGCCTGTGCAAGCTGGCCTGTTTGCTGTGC
AGCTTTGTTGGAATATTGTGCATCATCTGCGGACCGGTGCGCGTGAGCAA
TTTCCGCGGCAGTTTCTACCTGGCCGTAGTCACCATCGGATTCGTGGCCA
CCGGCTGCCTGCTCCTGGCCAGGTATCTCCGGTTGTGGCAGCGCCAGTTC
TGCCGATGCGATCCCACGCTCTGGTCCCTGGCGGTGCACTCCTCATTGGC
CCTGGCCTACTTCACGGCCTCCGGACTCGTACTCTCCCTGGATATTGGAG
CCTATACGGCGGCGGCGTTCTTTGGCCTGACAGCATTTTGCATCAACGGA
CTGGAGGCCTATGGAAACTATCGGCGCAGTCGCCAGCGGGAGGTGGCCAC
CCAAACGATATAGAAGCTTTCTAGACC
BS11209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-PA | 447 | CG12730-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-RB | 1892 | CG12730-RB | 814..1261 | 17..464 | 2240 | 100 | Plus |
CG12730-RA | 1241 | CG12730-RA | 163..610 | 17..464 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5517571..5517844 | 94..367 | 1370 | 100 | Plus |
X | 23542271 | X | 5518043..5518140 | 367..464 | 490 | 100 | Plus |
X | 23542271 | X | 5517421..5517498 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:29:00 has no hits.
BS11209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:02 Download gff for
BS11209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:16 Download gff for
BS11209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:46 Download gff for
BS11209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 159..613 | 13..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:17 Download gff for
BS11209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 159..613 | 13..469 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:17 Download gff for
BS11209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5517417..5517498 | 13..94 | 97 | -> | Plus |
X | 5517572..5517844 | 95..367 | 100 | -> | Plus |
X | 5518044..5518143 | 368..469 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:46 Download gff for
BS11209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5411450..5411531 | 13..94 | 97 | -> | Plus |
arm_X | 5411605..5411877 | 95..367 | 100 | -> | Plus |
arm_X | 5412077..5412176 | 368..469 | 98 | | Plus |
BS11209.complete Sequence
479 bp assembled on 2007-10-17
GenBank Submission: FJ638834
> BS11209.complete
GAAGTTATCAGTCGACATGTCGTTGACGGGAACCCAGGACTACGATCGCA
AATACCTGCTCAGCATGCCGGGCCTGTGCAAGCTGGCCTGTTTGCTGTGC
AGCTTTGTTGGAATATTGTGCATCATCTGCGGACCGGTGCGCGTGAGCAA
TTTCCGCGGCAGTTTCTACCTGGCCGTAGTCACCATCGGATTCGTGGCCA
CCGGCTGCCTGCTCCTGGCCAGGTATCTCCGGTTGTGGCAGCGCCAGTTC
TGCCGATGCGATCCCACGCTCTGGTCCCTGGCGGTGCACTCCTCATTGGC
CCTGGCCTACTTCACGGCCTCCGGACTCGTACTCTCCCTGGATATTGGAG
CCTATACGGCGGCGGCGTTCTTTGGCCTGACAGCATTTTGCATCAACGGA
CTGGAGGCCTATGGAAACTATCGGCGCAGTCGCCAGCGGGAGGTGGCCAC
CCAAACGATATAGAAGCTTTCTAGACCAT
BS11209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-RB | 447 | CG12730-PB | 1..447 | 17..463 | 2235 | 100 | Plus |
CG12730-RA | 447 | CG12730-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-RB | 1892 | CG12730-RB | 814..1261 | 17..464 | 2240 | 100 | Plus |
CG12730-RA | 1241 | CG12730-RA | 163..610 | 17..464 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5517571..5517844 | 94..367 | 1370 | 100 | Plus |
X | 23542271 | X | 5518043..5518140 | 367..464 | 490 | 100 | Plus |
X | 23542271 | X | 5517421..5517498 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:35:48 has no hits.
BS11209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:47 Download gff for
BS11209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:47 Download gff for
BS11209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 157..611 | 13..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:03:08 Download gff for
BS11209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 163..609 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:42 Download gff for
BS11209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 161..607 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:17 Download gff for
BS11209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 163..609 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:17 Download gff for
BS11209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5517421..5517498 | 17..94 | 100 | -> | Plus |
X | 5517572..5517844 | 95..367 | 100 | -> | Plus |
X | 5518044..5518139 | 368..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:03:08 Download gff for
BS11209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5411454..5411531 | 17..94 | 100 | -> | Plus |
arm_X | 5411605..5411877 | 95..367 | 100 | -> | Plus |
arm_X | 5412077..5412172 | 368..463 | 100 | | Plus |
BS11209.pep Sequence
Translation from 16 to 462
> BS11209.pep
MSLTGTQDYDRKYLLSMPGLCKLACLLCSFVGILCIICGPVRVSNFRGSF
YLAVVTIGFVATGCLLLARYLRLWQRQFCRCDPTLWSLAVHSSLALAYFT
ASGLVLSLDIGAYTAAAFFGLTAFCINGLEAYGNYRRSRQREVATQTI*
BS11209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-PB | 148 | CG12730-PB | 1..148 | 1..148 | 776 | 100 | Plus |
CG12730-PA | 148 | CG12730-PA | 1..148 | 1..148 | 776 | 100 | Plus |