Clone BS11209 Report

Search the DGRC for BS11209

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG12730-RA
Protein status:BS11209.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11209.3prime Sequence

477 bp (476 high quality bases) assembled on 2006-04-18

> BS11209.3prime
ATGGTCTAGAAAGCTTCTATATCGTTTGGGTGGCCACCTCCCGCTGGCGA
CTGCGCCGATAGTTTCCATAGGCCTCCAGTCCGTTGATGCAAAATGCTGT
CAGGCCAAAGAACGCCGCCGCCGTATAGGCTCCAATATCCAGGGAGAGTA
CGAGTCCGGAGGCCGTGAAGTAGGCCAGGGCCAATGAGGAGTGCACCGCC
AGGGACCAGAGCGTGGGATCGCATCGGCAGAACTGGCGCTGCCACAACCG
GAGATACCTGGCCAGGAGCAGGCAGCCGGTGGCCACGAATCCGATGGTGA
CTACGGCCAGGTAGAAACTGCCGCGGAAATTGCTCACGCGCACCGGTCCG
CAGATGATGCACAATATTCCAACAAAGCTGCACAGCAAACAGGCCAGCTT
GCACAGGCCCGGCATGCTGAGCAGGTATTTGCGATCGTAGTCCTGGGTTC
CCGTCAACGACATGTCGACTGATAACT

BS11209.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-PA 447 CG12730-RA 1..447 463..17 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-RB 1892 CG12730-RB 814..1261 463..16 2240 100 Minus
CG12730-RA 1241 CG12730-RA 163..610 463..16 2240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5517571..5517844 386..113 1370 100 Minus
X 23542271 X 5518043..5518140 113..16 490 100 Minus
X 23542271 X 5517421..5517498 463..386 390 100 Minus
Blast to na_te.dros performed on 2015-01-31 20:23:45 has no hits.

BS11209.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:01 Download gff for BS11209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:14 Download gff for BS11209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:39:44 Download gff for BS11209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 159..613 11..467 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:52:35 Download gff for BS11209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 159..613 11..467 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:52:35 Download gff for BS11209.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5517417..5517498 386..467 97 -> Minus
X 5517572..5517844 113..385 100 -> Minus
X 5518044..5518143 11..112 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:39:44 Download gff for BS11209.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5412077..5412176 11..112 98   Minus
arm_X 5411450..5411531 386..467 97 -> Minus
arm_X 5411605..5411877 113..385 100 -> Minus

BS11209.5prime Sequence

477 bp (476 high quality bases) assembled on 2006-04-18

> BS11209.5prime
GAAGTTATCAGTCGACATGTCGTTGACGGGAACCCAGGACTACGATCGCA
AATACCTGCTCAGCATGCCGGGCCTGTGCAAGCTGGCCTGTTTGCTGTGC
AGCTTTGTTGGAATATTGTGCATCATCTGCGGACCGGTGCGCGTGAGCAA
TTTCCGCGGCAGTTTCTACCTGGCCGTAGTCACCATCGGATTCGTGGCCA
CCGGCTGCCTGCTCCTGGCCAGGTATCTCCGGTTGTGGCAGCGCCAGTTC
TGCCGATGCGATCCCACGCTCTGGTCCCTGGCGGTGCACTCCTCATTGGC
CCTGGCCTACTTCACGGCCTCCGGACTCGTACTCTCCCTGGATATTGGAG
CCTATACGGCGGCGGCGTTCTTTGGCCTGACAGCATTTTGCATCAACGGA
CTGGAGGCCTATGGAAACTATCGGCGCAGTCGCCAGCGGGAGGTGGCCAC
CCAAACGATATAGAAGCTTTCTAGACC

BS11209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-PA 447 CG12730-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-RB 1892 CG12730-RB 814..1261 17..464 2240 100 Plus
CG12730-RA 1241 CG12730-RA 163..610 17..464 2240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5517571..5517844 94..367 1370 100 Plus
X 23542271 X 5518043..5518140 367..464 490 100 Plus
X 23542271 X 5517421..5517498 17..94 390 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:29:00 has no hits.

BS11209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:02 Download gff for BS11209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:16 Download gff for BS11209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:46 Download gff for BS11209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 159..613 13..469 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:17 Download gff for BS11209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 159..613 13..469 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:17 Download gff for BS11209.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5517417..5517498 13..94 97 -> Plus
X 5517572..5517844 95..367 100 -> Plus
X 5518044..5518143 368..469 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:46 Download gff for BS11209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5411450..5411531 13..94 97 -> Plus
arm_X 5411605..5411877 95..367 100 -> Plus
arm_X 5412077..5412176 368..469 98   Plus

BS11209.complete Sequence

479 bp assembled on 2007-10-17

GenBank Submission: FJ638834

> BS11209.complete
GAAGTTATCAGTCGACATGTCGTTGACGGGAACCCAGGACTACGATCGCA
AATACCTGCTCAGCATGCCGGGCCTGTGCAAGCTGGCCTGTTTGCTGTGC
AGCTTTGTTGGAATATTGTGCATCATCTGCGGACCGGTGCGCGTGAGCAA
TTTCCGCGGCAGTTTCTACCTGGCCGTAGTCACCATCGGATTCGTGGCCA
CCGGCTGCCTGCTCCTGGCCAGGTATCTCCGGTTGTGGCAGCGCCAGTTC
TGCCGATGCGATCCCACGCTCTGGTCCCTGGCGGTGCACTCCTCATTGGC
CCTGGCCTACTTCACGGCCTCCGGACTCGTACTCTCCCTGGATATTGGAG
CCTATACGGCGGCGGCGTTCTTTGGCCTGACAGCATTTTGCATCAACGGA
CTGGAGGCCTATGGAAACTATCGGCGCAGTCGCCAGCGGGAGGTGGCCAC
CCAAACGATATAGAAGCTTTCTAGACCAT

BS11209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-RB 447 CG12730-PB 1..447 17..463 2235 100 Plus
CG12730-RA 447 CG12730-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-RB 1892 CG12730-RB 814..1261 17..464 2240 100 Plus
CG12730-RA 1241 CG12730-RA 163..610 17..464 2240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5517571..5517844 94..367 1370 100 Plus
X 23542271 X 5518043..5518140 367..464 490 100 Plus
X 23542271 X 5517421..5517498 17..94 390 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:35:48 has no hits.

BS11209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:47 Download gff for BS11209.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:47 Download gff for BS11209.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 157..611 13..469 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:03:08 Download gff for BS11209.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 163..609 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:42 Download gff for BS11209.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 161..607 17..463 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:17 Download gff for BS11209.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 163..609 17..463 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:17 Download gff for BS11209.complete
Subject Subject Range Query Range Percent Splice Strand
X 5517421..5517498 17..94 100 -> Plus
X 5517572..5517844 95..367 100 -> Plus
X 5518044..5518139 368..463 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:03:08 Download gff for BS11209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5411454..5411531 17..94 100 -> Plus
arm_X 5411605..5411877 95..367 100 -> Plus
arm_X 5412077..5412172 368..463 100   Plus

BS11209.pep Sequence

Translation from 16 to 462

> BS11209.pep
MSLTGTQDYDRKYLLSMPGLCKLACLLCSFVGILCIICGPVRVSNFRGSF
YLAVVTIGFVATGCLLLARYLRLWQRQFCRCDPTLWSLAVHSSLALAYFT
ASGLVLSLDIGAYTAAAFFGLTAFCINGLEAYGNYRRSRQREVATQTI*

BS11209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-PB 148 CG12730-PB 1..148 1..148 776 100 Plus
CG12730-PA 148 CG12730-PA 1..148 1..148 776 100 Plus