Clone BS11210 Report

Search the DGRC for BS11210

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG15211-RA
Protein status:BS11210.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11210.3prime Sequence

564 bp (563 high quality bases) assembled on 2006-04-18

> BS11210.3prime
ATGGTCTAGAAAGCTTTTAGTGGGTAGCCCCGGACCTGTGGGCCAGGAAC
AGGAAGTACGTGCCCGCCGCGTATGCCAGGAAATTGAAGAGTCCAAAGAC
ACCGGCGGCGGTATTCGAACCGGAACCCTTGCCCGTGGCATCCGACCATC
TGGCCAGCTGGACGATGAATCCGATGAAGTACAGCAGCGTCAGCACAGCG
GTGGTGATCAGCTCCGAGAATATCCAGTTGACGGCCACGTTGAGGGCCTC
GCGAATGCCCAGGAAATAGGCGGCGATCAGCAGAATGTTGATGATGAACG
AGATGACGATGACGAACATGAAGAACGAGGTGGCCGAGGCCAGTGGAGGA
GCTGCCAGGGCCATGCAGATGATGCCCAGCACAAACTCCACAATTTTGAT
GATGCCCGGTATGGTGCGGAAATAGTCGATGTTGAGGCGAATGGCGCTCC
AGAAGCCGCCACCGCTGCCAACGGTCGGGTTCGCTCCACCTGGCGGTCCG
TTCGTCGTTGTTGTTGTTGTGCGCTCGATATTGACAACGGTCTCGACCAT
GTCGACTGATAACT

BS11210.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-PA 534 CG15211-RA 1..534 550..17 2645 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-RE 1135 CG15211-RE 232..765 550..17 2655 99.8 Minus
CG15211-RD 1136 CG15211-RD 233..766 550..17 2655 99.8 Minus
CG15211-RC 1197 CG15211-RC 294..827 550..17 2655 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10778210..10778408 215..17 980 99.5 Minus
X 23542271 X 10772999..10773169 550..380 855 100 Minus
X 23542271 X 10777961..10778129 382..214 845 100 Minus
Blast to na_te.dros performed 2015-02-12 12:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 1745..1803 519..461 107 69.4 Minus

BS11210.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:03 Download gff for BS11210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-PA 1..534 17..550 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:17 Download gff for BS11210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-PA 1..534 17..550 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:32:26 Download gff for BS11210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 287..831 13..558 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:19:24 Download gff for BS11210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 287..831 13..558 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:19:24 Download gff for BS11210.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10772992..10773166 383..558 97 -> Minus
X 10777961..10778128 215..382 100 -> Minus
X 10778211..10778412 13..214 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:32:26 Download gff for BS11210.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10667025..10667199 383..558 97 -> Minus
arm_X 10671994..10672161 215..382 100 -> Minus
arm_X 10672244..10672445 13..214 98   Minus

BS11210.5prime Sequence

564 bp (563 high quality bases) assembled on 2006-04-18

> BS11210.5prime
GAAGTTATCAGTCGACATGGTCGAGACCGTTGTCAATATCGAGCGCACAA
CAACAACAACGACGAACGGACCGCCAGGTGGAGCGAACCCGACCGTTGGC
AGCGGTGGCGGCTTCTGGAGCGCCATTCGCCTCAACATCGACTATTTCCG
CACCATACCGGGCATCATCAAAATTGTGGAGTTTGTGCTGGGCATCATCT
GCATGGCCCTGGCAGCTCCTCCACTGGCCTCGGCCACCTCGTTCTTCATG
TTCGTCATCGTCATCTCGTTCATCATCAACATTCTGCTGATCGCCGCCTA
TTTCCTGGGCATTCGCGAGGCCCTCAACGTGGCCGTCAACTGGATATTCT
CGGAGCTGATCACCACCGCTGTGCTGACGCTGCTGTACTTCATCGGATTC
ATCGTCCAGCTGGCCAGATGGTCGGATGCCACGGGCAAGGGTTCCGGTTC
GAATACCGCCGCCGGTGTCTTTGGACTCTTCAATTTCCTGGCATACGCGG
CGGGCACGTACTTCCTGTTCCTGGCCCACAGGTCCGGGGCTACCCACTAA
AAGCTTTCTAGACC

BS11210.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-PA 534 CG15211-RA 1..534 17..550 2645 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-RE 1135 CG15211-RE 232..765 17..550 2655 99.8 Plus
CG15211-RD 1136 CG15211-RD 233..766 17..550 2655 99.8 Plus
CG15211-RC 1197 CG15211-RC 294..827 17..550 2655 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10778210..10778408 352..550 980 99.5 Plus
X 23542271 X 10772999..10773169 17..187 855 100 Plus
X 23542271 X 10777961..10778129 185..353 845 100 Plus
Blast to na_te.dros performed 2015-02-12 17:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 1745..1803 48..106 107 69.4 Plus

BS11210.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:04 Download gff for BS11210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-PA 1..534 17..550 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:18 Download gff for BS11210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-PA 1..534 17..550 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:29:47 Download gff for BS11210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 287..831 9..554 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:28 Download gff for BS11210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 287..831 9..554 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:28 Download gff for BS11210.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10772992..10773166 9..184 97 -> Plus
X 10777961..10778128 185..352 100 -> Plus
X 10778211..10778412 353..554 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:29:47 Download gff for BS11210.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10671994..10672161 185..352 100 -> Plus
arm_X 10667025..10667199 9..184 97 -> Plus
arm_X 10672244..10672445 353..554 98   Plus

BS11210.complete Sequence

566 bp assembled on 2007-10-17

GenBank Submission: FJ636786

> BS11210.complete
GAAGTTATCAGTCGACATGGTCGAGACCGTTGTCAATATCGAGCGCACAA
CAACAACAACGACGAACGGACCGCCAGGTGGAGCGAACCCGACCGTTGGC
AGCGGTGGCGGCTTCTGGAGCGCCATTCGCCTCAACATCGACTATTTCCG
CACCATACCGGGCATCATCAAAATTGTGGAGTTTGTGCTGGGCATCATCT
GCATGGCCCTGGCAGCTCCTCCACTGGCCTCGGCCACCTCGTTCTTCATG
TTCGTCATCGTCATCTCGTTCATCATCAACATTCTGCTGATCGCCGCCTA
TTTCCTGGGCATTCGCGAGGCCCTCAACGTGGCCGTCAACTGGATATTCT
CGGAGCTGATCACCACCGCTGTGCTGACGCTGCTGTACTTCATCGGATTC
ATCGTCCAGCTGGCCAGATGGTCGGATGCCACGGGCAAGGGTTCCGGTTC
GAATACCGCCGCCGGTGTCTTTGGACTCTTCAATTTCCTGGCATACGCGG
CGGGCACGTACTTCCTGTTCCTGGCCCACAGGTCCGGGGCTACCCACTAA
AAGCTTTCTAGACCAT

BS11210.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-RE 534 CG15211-PE 1..534 17..550 2655 99.8 Plus
CG15211-RD 534 CG15211-PD 1..534 17..550 2655 99.8 Plus
CG15211-RC 534 CG15211-PC 1..534 17..550 2655 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-RE 1135 CG15211-RE 232..765 17..550 2655 99.8 Plus
CG15211-RD 1136 CG15211-RD 233..766 17..550 2655 99.8 Plus
CG15211-RC 1197 CG15211-RC 294..827 17..550 2655 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10778210..10778408 352..550 980 99.5 Plus
X 23542271 X 10772999..10773169 17..187 855 100 Plus
X 23542271 X 10777961..10778129 185..353 845 100 Plus
Blast to na_te.dros performed 2014-11-28 00:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 1745..1803 48..106 107 69.4 Plus

BS11210.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:48 Download gff for BS11210.complete
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 1..534 17..550 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:32 Download gff for BS11210.complete
Subject Subject Range Query Range Percent Splice Strand
CG15211-RA 278..822 9..554 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:40 Download gff for BS11210.complete
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 294..825 17..548 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:06 Download gff for BS11210.complete
Subject Subject Range Query Range Percent Splice Strand
CG15211-RA 285..816 17..548 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:06 Download gff for BS11210.complete
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 294..825 17..548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:06 Download gff for BS11210.complete
Subject Subject Range Query Range Percent Splice Strand
X 10772999..10773166 17..184 100 -> Plus
X 10777961..10778128 185..352 100 -> Plus
X 10778211..10778406 353..548 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:40 Download gff for BS11210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10667032..10667199 17..184 100 -> Plus
arm_X 10671994..10672161 185..352 100 -> Plus
arm_X 10672244..10672439 353..548 99   Plus

BS11210.pep Sequence

Translation from 16 to 549

> BS11210.pep
MVETVVNIERTTTTTTNGPPGGANPTVGSGGGFWSAIRLNIDYFRTIPGI
IKIVEFVLGIICMALAAPPLASATSFFMFVIVISFIINILLIAAYFLGIR
EALNVAVNWIFSELITTAVLTLLYFIGFIVQLARWSDATGKGSGSNTAAG
VFGLFNFLAYAAGTYFLFLAHRSGATH*

BS11210.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-PE 177 CG15211-PE 1..177 1..177 899 100 Plus
CG15211-PD 177 CG15211-PD 1..177 1..177 899 100 Plus
CG15211-PC 177 CG15211-PC 1..177 1..177 899 100 Plus
CG15211-PB 177 CG15211-PB 1..177 1..177 899 100 Plus
CG15211-PA 177 CG15211-PA 1..177 1..177 899 100 Plus