Clone Sequence Records
BS11210.3prime Sequence
564 bp (563 high quality bases) assembled on 2006-04-18
> BS11210.3prime
ATGGTCTAGAAAGCTTTTAGTGGGTAGCCCCGGACCTGTGGGCCAGGAAC
AGGAAGTACGTGCCCGCCGCGTATGCCAGGAAATTGAAGAGTCCAAAGAC
ACCGGCGGCGGTATTCGAACCGGAACCCTTGCCCGTGGCATCCGACCATC
TGGCCAGCTGGACGATGAATCCGATGAAGTACAGCAGCGTCAGCACAGCG
GTGGTGATCAGCTCCGAGAATATCCAGTTGACGGCCACGTTGAGGGCCTC
GCGAATGCCCAGGAAATAGGCGGCGATCAGCAGAATGTTGATGATGAACG
AGATGACGATGACGAACATGAAGAACGAGGTGGCCGAGGCCAGTGGAGGA
GCTGCCAGGGCCATGCAGATGATGCCCAGCACAAACTCCACAATTTTGAT
GATGCCCGGTATGGTGCGGAAATAGTCGATGTTGAGGCGAATGGCGCTCC
AGAAGCCGCCACCGCTGCCAACGGTCGGGTTCGCTCCACCTGGCGGTCCG
TTCGTCGTTGTTGTTGTTGTGCGCTCGATATTGACAACGGTCTCGACCAT
GTCGACTGATAACT
BS11210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-PA | 534 | CG15211-RA | 1..534 | 550..17 | 2645 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-RE | 1135 | CG15211-RE | 232..765 | 550..17 | 2655 | 99.8 | Minus |
CG15211-RD | 1136 | CG15211-RD | 233..766 | 550..17 | 2655 | 99.8 | Minus |
CG15211-RC | 1197 | CG15211-RC | 294..827 | 550..17 | 2655 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10778210..10778408 | 215..17 | 980 | 99.5 | Minus |
X | 23542271 | X | 10772999..10773169 | 550..380 | 855 | 100 | Minus |
X | 23542271 | X | 10777961..10778129 | 382..214 | 845 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 12:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 1745..1803 | 519..461 | 107 | 69.4 | Minus |
BS11210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:03 Download gff for
BS11210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-PA | 1..534 | 17..550 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:17 Download gff for
BS11210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-PA | 1..534 | 17..550 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:32:26 Download gff for
BS11210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 287..831 | 13..558 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:19:24 Download gff for
BS11210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 287..831 | 13..558 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:19:24 Download gff for
BS11210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10772992..10773166 | 383..558 | 97 | -> | Minus |
X | 10777961..10778128 | 215..382 | 100 | -> | Minus |
X | 10778211..10778412 | 13..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:32:26 Download gff for
BS11210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10667025..10667199 | 383..558 | 97 | -> | Minus |
arm_X | 10671994..10672161 | 215..382 | 100 | -> | Minus |
arm_X | 10672244..10672445 | 13..214 | 98 | | Minus |
BS11210.5prime Sequence
564 bp (563 high quality bases) assembled on 2006-04-18
> BS11210.5prime
GAAGTTATCAGTCGACATGGTCGAGACCGTTGTCAATATCGAGCGCACAA
CAACAACAACGACGAACGGACCGCCAGGTGGAGCGAACCCGACCGTTGGC
AGCGGTGGCGGCTTCTGGAGCGCCATTCGCCTCAACATCGACTATTTCCG
CACCATACCGGGCATCATCAAAATTGTGGAGTTTGTGCTGGGCATCATCT
GCATGGCCCTGGCAGCTCCTCCACTGGCCTCGGCCACCTCGTTCTTCATG
TTCGTCATCGTCATCTCGTTCATCATCAACATTCTGCTGATCGCCGCCTA
TTTCCTGGGCATTCGCGAGGCCCTCAACGTGGCCGTCAACTGGATATTCT
CGGAGCTGATCACCACCGCTGTGCTGACGCTGCTGTACTTCATCGGATTC
ATCGTCCAGCTGGCCAGATGGTCGGATGCCACGGGCAAGGGTTCCGGTTC
GAATACCGCCGCCGGTGTCTTTGGACTCTTCAATTTCCTGGCATACGCGG
CGGGCACGTACTTCCTGTTCCTGGCCCACAGGTCCGGGGCTACCCACTAA
AAGCTTTCTAGACC
BS11210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-PA | 534 | CG15211-RA | 1..534 | 17..550 | 2645 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-RE | 1135 | CG15211-RE | 232..765 | 17..550 | 2655 | 99.8 | Plus |
CG15211-RD | 1136 | CG15211-RD | 233..766 | 17..550 | 2655 | 99.8 | Plus |
CG15211-RC | 1197 | CG15211-RC | 294..827 | 17..550 | 2655 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10778210..10778408 | 352..550 | 980 | 99.5 | Plus |
X | 23542271 | X | 10772999..10773169 | 17..187 | 855 | 100 | Plus |
X | 23542271 | X | 10777961..10778129 | 185..353 | 845 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 17:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 1745..1803 | 48..106 | 107 | 69.4 | Plus |
BS11210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:04 Download gff for
BS11210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-PA | 1..534 | 17..550 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:18 Download gff for
BS11210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-PA | 1..534 | 17..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:29:47 Download gff for
BS11210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 287..831 | 9..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:28 Download gff for
BS11210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 287..831 | 9..554 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:28 Download gff for
BS11210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10772992..10773166 | 9..184 | 97 | -> | Plus |
X | 10777961..10778128 | 185..352 | 100 | -> | Plus |
X | 10778211..10778412 | 353..554 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:29:47 Download gff for
BS11210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10671994..10672161 | 185..352 | 100 | -> | Plus |
arm_X | 10667025..10667199 | 9..184 | 97 | -> | Plus |
arm_X | 10672244..10672445 | 353..554 | 98 | | Plus |
BS11210.complete Sequence
566 bp assembled on 2007-10-17
GenBank Submission: FJ636786
> BS11210.complete
GAAGTTATCAGTCGACATGGTCGAGACCGTTGTCAATATCGAGCGCACAA
CAACAACAACGACGAACGGACCGCCAGGTGGAGCGAACCCGACCGTTGGC
AGCGGTGGCGGCTTCTGGAGCGCCATTCGCCTCAACATCGACTATTTCCG
CACCATACCGGGCATCATCAAAATTGTGGAGTTTGTGCTGGGCATCATCT
GCATGGCCCTGGCAGCTCCTCCACTGGCCTCGGCCACCTCGTTCTTCATG
TTCGTCATCGTCATCTCGTTCATCATCAACATTCTGCTGATCGCCGCCTA
TTTCCTGGGCATTCGCGAGGCCCTCAACGTGGCCGTCAACTGGATATTCT
CGGAGCTGATCACCACCGCTGTGCTGACGCTGCTGTACTTCATCGGATTC
ATCGTCCAGCTGGCCAGATGGTCGGATGCCACGGGCAAGGGTTCCGGTTC
GAATACCGCCGCCGGTGTCTTTGGACTCTTCAATTTCCTGGCATACGCGG
CGGGCACGTACTTCCTGTTCCTGGCCCACAGGTCCGGGGCTACCCACTAA
AAGCTTTCTAGACCAT
BS11210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-RE | 534 | CG15211-PE | 1..534 | 17..550 | 2655 | 99.8 | Plus |
CG15211-RD | 534 | CG15211-PD | 1..534 | 17..550 | 2655 | 99.8 | Plus |
CG15211-RC | 534 | CG15211-PC | 1..534 | 17..550 | 2655 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-RE | 1135 | CG15211-RE | 232..765 | 17..550 | 2655 | 99.8 | Plus |
CG15211-RD | 1136 | CG15211-RD | 233..766 | 17..550 | 2655 | 99.8 | Plus |
CG15211-RC | 1197 | CG15211-RC | 294..827 | 17..550 | 2655 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10778210..10778408 | 352..550 | 980 | 99.5 | Plus |
X | 23542271 | X | 10772999..10773169 | 17..187 | 855 | 100 | Plus |
X | 23542271 | X | 10777961..10778129 | 185..353 | 845 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 1745..1803 | 48..106 | 107 | 69.4 | Plus |
BS11210.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:48 Download gff for
BS11210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 1..534 | 17..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:32 Download gff for
BS11210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RA | 278..822 | 9..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:40 Download gff for
BS11210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 294..825 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:06 Download gff for
BS11210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RA | 285..816 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:06 Download gff for
BS11210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 294..825 | 17..548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:06 Download gff for
BS11210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10772999..10773166 | 17..184 | 100 | -> | Plus |
X | 10777961..10778128 | 185..352 | 100 | -> | Plus |
X | 10778211..10778406 | 353..548 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:40 Download gff for
BS11210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10667032..10667199 | 17..184 | 100 | -> | Plus |
arm_X | 10671994..10672161 | 185..352 | 100 | -> | Plus |
arm_X | 10672244..10672439 | 353..548 | 99 | | Plus |
BS11210.pep Sequence
Translation from 16 to 549
> BS11210.pep
MVETVVNIERTTTTTTNGPPGGANPTVGSGGGFWSAIRLNIDYFRTIPGI
IKIVEFVLGIICMALAAPPLASATSFFMFVIVISFIINILLIAAYFLGIR
EALNVAVNWIFSELITTAVLTLLYFIGFIVQLARWSDATGKGSGSNTAAG
VFGLFNFLAYAAGTYFLFLAHRSGATH*
BS11210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-PE | 177 | CG15211-PE | 1..177 | 1..177 | 899 | 100 | Plus |
CG15211-PD | 177 | CG15211-PD | 1..177 | 1..177 | 899 | 100 | Plus |
CG15211-PC | 177 | CG15211-PC | 1..177 | 1..177 | 899 | 100 | Plus |
CG15211-PB | 177 | CG15211-PB | 1..177 | 1..177 | 899 | 100 | Plus |
CG15211-PA | 177 | CG15211-PA | 1..177 | 1..177 | 899 | 100 | Plus |