Clone Sequence Records
BS11211.5prime Sequence
961 bp (776 high quality bases) assembled on 2006-04-18
> BS11211.5prime
GAAGTTATCAGTCGACATGGAATTAGGCAAGAAACTACGAGAAGTCGGGT
GGTACCTGACAGAGGAGGGCCTTAAAATCGTGACAACAGCCGTCGGCAGC
GAGGATGTCCGGAAAATAGTCAATGATGCACTGAATCGAGATCTGCGCGA
TATTGGCGGTGGCGCACTGCCCGCGAAACGCGAAGATGCCACTTTGCCCG
GTAAAATTGTGCTGCAGGTTCAGCGTGTGCGAAATATTGCCGCTCCCAAG
GCGAATGAGGAATCGAAGGCGGCGCCACGCCTCCTTCAGTTGGATCTGAG
TGATGGGCAGAATTCCATAAAGGCCTTGGAGCTGGAGCCAGTTCCCCAAC
TGAATCTCAATGTGGCTCCCGGAAGCAAGATCTATTTCAAGGCCGAGAAA
CTGCAGCTTATGCAGGGATTCCTGCTGCTAAAGTCCAGTGAAATTCAGCT
GCTCGGCGGCCGTGTGGATGCACTCTACGAGAAATGGGATCTGGCCAGGA
CCATGATGAGATATGCGCGCAGTGGGCGCCCCTTGAATGGGACATCAGCG
CCACCCCCGTGGGTGGCATTTGGCCGAAAAATCGATAGCAACGCCGAAAG
CGAAATGAACTTTAAGAGCCTGGGCGAGGGCGACAAGGACAAGCCGGCAA
AGGAGAACGAAGAGTTCAATGCCATGCGCACAGAGGCCATTGCCGTGGCC
ACCAAGGCCGGCGGCAAGAAGATCTTTGGCGGCGGTGGCCAGAACATTAT
CGATCACAATGTTAAGAAGATCCTAGACAAGGGCTTCAGCGAGGAGGAGG
CCCGCAGTGCCTTATCTGCTACCCGAAACAACTTGGAGCGCGCCCTATAC
AATCTAAAAAGACGCAATGAAGCTGGCGGTGTGGGTCCGATCGAATCCGT
GGGTCGTCCGGGACGCGGAGATCGTCCGCCCAGAAAGGGAAAGCGGGGAG
CTAGGCGCCAA
BS11211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13472-PA | 2511 | CG13472-RA | 1..938 | 17..954 | 4615 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tdrd3-RA | 2644 | CG13472-RA | 57..1000 | 17..961 | 4655 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14787093..14787910 | 137..954 | 4045 | 99.6 | Plus |
3L | 28110227 | 3L | 14786933..14787018 | 51..136 | 430 | 100 | Plus |
3L | 28110227 | 3L | 14786847..14786884 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:05:57 has no hits.
BS11211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:05 Download gff for
BS11211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13472-PA | 1..942 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:19 Download gff for
BS11211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13472-PA | 1..942 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:15 Download gff for
BS11211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13472-RA | 57..998 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:04 Download gff for
BS11211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tdrd3-RA | 57..998 | 17..959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:04 Download gff for
BS11211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14786847..14786881 | 17..51 | 100 | -> | Plus |
3L | 14786934..14787018 | 52..136 | 100 | -> | Plus |
3L | 14787093..14787914 | 137..959 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:15 Download gff for
BS11211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14779947..14779981 | 17..51 | 100 | -> | Plus |
arm_3L | 14780034..14780118 | 52..136 | 100 | -> | Plus |
arm_3L | 14780193..14781014 | 137..959 | 99 | | Plus |
BS11211.complete Sequence
2543 bp assembled on 2008-08-15
GenBank Submission: KX806357
> BS11211.complete
GAAGTTATCAGTCGACATGGAATTAGGCAAGAAACTACGAGAAGTCGGGT
GGTACCTGACAGAGGAGGGCCTTAAAATCGTGACAACAGCCGTCGGCAGC
GAGGATGTCCGGAAAATAGTCAATGATGCACTGAATCGAGATCTGCGCGA
TATTGGCGGTGGCGCACTGCCCGCGAAACGCGAAGATGCCACTTTGCCCG
GTAAAATTGTGCTGCAGGTTCAGCGTGTGCGAAATATTGCCGCTCCCAAG
GCGAATGAGGAATCGAAGGCGGCGCCACGCCTCCTTCAGTTGGATCTGAG
TGATGGGCAGAATTCCATAAAGGCCTTGGAGCTGGAGCCAGTTCCCCAAC
TGAATCTCAATGTGGCTCCCGGAAGCAAGATCTATTTCAAGGCCGAGAAA
CTGCAGCTTATGCAGGGATTCCTGCTGCTAAAGTCCAGTGAAATTCAGCT
GCTCGGCGGCCGTGTGGATGCACTCTACGAGAAATGGGATCTGGCCAGGA
CCATGATGAGATATGCGCGCAGTGGGCGCCCCTTGAATGGGACATCAGCG
CCACCCCCGTGGGTGGCATTTGGCCGAAAAATCGATAGCAACGCCGAAAG
CGAAATGAACTTTAAGAGCCTGGGCGAGGGCGACAAGGACAAGCCGGCAA
AGGAGAACGAAGAGTTCAATGCCATGCGCACAGAGGCCATTGCCGTGGCC
ACCAAGGCCGGCGGCAAGAAGATCTTTGGCGGCGGTGGCCAGAACATTAT
CGATCACAATGTTAAGAAGATCCTAGACAAGGGCTTCAGCGAGGAGGAGG
CCCGCAGTGCCTTATCTGCTACCCGAAACAACTTGGAGCGCGCCCTATAC
AATCTAAAAAGACGCAGTGAAGCTGGCGGTGTGGGTCCGATCGAATCCGT
GGGTCGTCCGGGACGCGGAGATCGTCCGCCCAGAGAGGGAAAGCGTGGAG
CTAGCGCCAAGGACGAAGTTGAAGCACCCAAGCCGGCTGCCAACACCACG
CTGTTTGATTTCCTAACCAATAAACTGCCCGCCAAGGAAACACCGGCCGC
TAGTAATGCAGAAACCTTCGCTGCCGCTCCAACTGCCGCTCCGACTGCCC
CACCCACTACCAATCACTTCAATCCATTTAAGCAATATGGAAGCTCGCGC
TTCAGCGATTCCGAGAGCAAACCTTCAGCTATGGGCGGAGGCGGCAAGTT
TGCAGATCGTTCTAGGTTTGAGAACAACGTATCGAGCAGCTTTGCCGCAC
ATCGTGGTGGACATGTGGGTTCGTCGCGAGGCGGTGGCCGTAACCGGGGT
GGCGGCAGGGACGAAAGGCCACCAAGAGAGGAGCGAGCCTACAGGGAAGA
CAGGCCTCCGAGGGAAGAAAAACCGCCGAAAGAGGAGAGACCACCGCGAG
AGCGAGGAGCGTTCAATGATCGTGCAGCTGGACGTTACAAACCAGAAACG
CCAACCGTAAAAACCGCAAATCGCAATGGCTCGGATAACGTATCGTTGAA
ACCGAATTCCGAGATTAAGCCAGATCATGAAACAACCAATGGGAAGGACC
ACACTGGCAACCGACGTGGCAGCGAACGAGGCAGCAATCGTGGAGGCTCC
AATCGAGCAGAGAACGGCAACGCCAATGGCAACAGACGAAACAAGCCGGC
AGCAAGCTTAACTTCGGCGAGTTCTGCAGCGAAATCGACAAATAGTGCTG
GCGATGATTTCAACGCCCGTTTGAGTAAGATAACCGAGGAAACAGCTAAT
CTCAAGGTGAGCAGTGCGCCAAAGCGAGAGAATCGACGTAAGCAAGGAGG
ACAAGCCAATCGCCTGGCGGGATCGGGCACAGAAACAACGCAGCAGCAGC
AGCCAGCACAGTTGCATTCGCAGAAGCCAGAGAAGGCTCAAACCAACCAA
AAGCATCACAATCCCAGGCACAATTCGCAGGCGAACTACAGTCAATTGGC
GAATGGCTACACTTACGATCCCAGCAAGATCATGGGTTTCCAGAGCAAGG
AGGCCAACGAGTTTGCCATGAACCTTCTAAAGAGCCAGGGTGTTACACTG
CCCAACGAAAAACAACAGGAGGAGGAACAGCAGGAATCGCCACCCATGTC
CTTTGGCCCCGTTTCCGCTCCTGTTTCCCGTGCGCAACCTGCTCCAGTGG
CTGTGCCACAGGCTGCGCCACGGGATCAGTTCGGCATGGTGCCAGGCGAT
GCGTGGATGTGGCAGAAGGGCGACTTGTGCATGGCCAAGTATTGGGACGA
TGGAAGGTATTATGAGGCTGAGATCACGGGCGTGTCGGAGAAAACTTGCG
TGGTCTTCTTTATGGGCTATGGAAACCATGAGGAGGTATTGAAGGTCGAC
ATCCTGCCCATCACCGATGCCCAAAACAGGCCACTGAGCAACTCAGCGCA
GCAGCAGCAACCGCATCTGCAGCAACAGCAACCGCATCTACAGCAGCAGC
AACATTCACGCTACCGCGGAGATCGTCAGACGCAGCAGCAGCAAGTCTAC
GTGCCGCCCCACAAACGAGAGCATTGAAAGCTTTCTAGACCAT
BS11211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tdrd3-RA | 2511 | CG13472-PA | 1..2511 | 17..2527 | 12555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tdrd3-RA | 2644 | CG13472-RA | 57..2567 | 17..2527 | 12555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14787093..14789213 | 137..2257 | 10605 | 100 | Plus |
3L | 28110227 | 3L | 14789318..14789588 | 2257..2527 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 14786933..14787018 | 51..136 | 430 | 100 | Plus |
3L | 28110227 | 3L | 14786847..14786884 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 12:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6899 | 2387..2531 | 230 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6830 | 2387..2495 | 210 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6928 | 2399..2521 | 201 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2468 | 2398..2494 | 195 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6834 | 2406..2523 | 195 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2416 | 2399..2493 | 186 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2857 | 2399..2496 | 169 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2515 | 2399..2496 | 165 | 64.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1116 | 2399..2454 | 163 | 76.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2432 | 1830..1923 | 150 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6673..6824 | 2379..2531 | 132 | 54.9 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 643..728 | 2493..2402 | 121 | 64.1 | Minus |
BS11211.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:40 Download gff for
BS11211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13472-RA | 55..2565 | 17..2527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:35:35 Download gff for
BS11211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13472-RA | 57..2566 | 17..2526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:15 Download gff for
BS11211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13472-RA | 55..2564 | 17..2526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:29 Download gff for
BS11211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tdrd3-RA | 57..2566 | 17..2526 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:29 Download gff for
BS11211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14786847..14786881 | 17..51 | 100 | -> | Plus |
3L | 14786934..14787018 | 52..136 | 100 | -> | Plus |
3L | 14787093..14789213 | 137..2257 | 100 | -> | Plus |
3L | 14789319..14789587 | 2258..2526 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:35:35 Download gff for
BS11211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14779947..14779981 | 17..51 | 100 | -> | Plus |
arm_3L | 14780034..14780118 | 52..136 | 100 | -> | Plus |
arm_3L | 14780193..14782313 | 137..2257 | 100 | -> | Plus |
arm_3L | 14782419..14782687 | 2258..2526 | 100 | | Plus |
BS11211.pep Sequence
Translation from 16 to 2526
> BS11211.pep
MELGKKLREVGWYLTEEGLKIVTTAVGSEDVRKIVNDALNRDLRDIGGGA
LPAKREDATLPGKIVLQVQRVRNIAAPKANEESKAAPRLLQLDLSDGQNS
IKALELEPVPQLNLNVAPGSKIYFKAEKLQLMQGFLLLKSSEIQLLGGRV
DALYEKWDLARTMMRYARSGRPLNGTSAPPPWVAFGRKIDSNAESEMNFK
SLGEGDKDKPAKENEEFNAMRTEAIAVATKAGGKKIFGGGGQNIIDHNVK
KILDKGFSEEEARSALSATRNNLERALYNLKRRSEAGGVGPIESVGRPGR
GDRPPREGKRGASAKDEVEAPKPAANTTLFDFLTNKLPAKETPAASNAET
FAAAPTAAPTAPPTTNHFNPFKQYGSSRFSDSESKPSAMGGGGKFADRSR
FENNVSSSFAAHRGGHVGSSRGGGRNRGGGRDERPPREERAYREDRPPRE
EKPPKEERPPRERGAFNDRAAGRYKPETPTVKTANRNGSDNVSLKPNSEI
KPDHETTNGKDHTGNRRGSERGSNRGGSNRAENGNANGNRRNKPAASLTS
ASSAAKSTNSAGDDFNARLSKITEETANLKVSSAPKRENRRKQGGQANRL
AGSGTETTQQQQPAQLHSQKPEKAQTNQKHHNPRHNSQANYSQLANGYTY
DPSKIMGFQSKEANEFAMNLLKSQGVTLPNEKQQEEEQQESPPMSFGPVS
APVSRAQPAPVAVPQAAPRDQFGMVPGDAWMWQKGDLCMAKYWDDGRYYE
AEITGVSEKTCVVFFMGYGNHEEVLKVDILPITDAQNRPLSNSAQQQQPH
LQQQQPHLQQQQHSRYRGDRQTQQQQVYVPPHKREH*
BS11211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tdrd3-PA | 836 | CG13472-PA | 1..836 | 1..836 | 4363 | 100 | Plus |