Clone BS11211 Report

Search the DGRC for BS11211

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptTdrd3-RA
Protein status:BS11211.pep: full length peptide match
Sequenced Size:2543

Clone Sequence Records

BS11211.5prime Sequence

961 bp (776 high quality bases) assembled on 2006-04-18

> BS11211.5prime
GAAGTTATCAGTCGACATGGAATTAGGCAAGAAACTACGAGAAGTCGGGT
GGTACCTGACAGAGGAGGGCCTTAAAATCGTGACAACAGCCGTCGGCAGC
GAGGATGTCCGGAAAATAGTCAATGATGCACTGAATCGAGATCTGCGCGA
TATTGGCGGTGGCGCACTGCCCGCGAAACGCGAAGATGCCACTTTGCCCG
GTAAAATTGTGCTGCAGGTTCAGCGTGTGCGAAATATTGCCGCTCCCAAG
GCGAATGAGGAATCGAAGGCGGCGCCACGCCTCCTTCAGTTGGATCTGAG
TGATGGGCAGAATTCCATAAAGGCCTTGGAGCTGGAGCCAGTTCCCCAAC
TGAATCTCAATGTGGCTCCCGGAAGCAAGATCTATTTCAAGGCCGAGAAA
CTGCAGCTTATGCAGGGATTCCTGCTGCTAAAGTCCAGTGAAATTCAGCT
GCTCGGCGGCCGTGTGGATGCACTCTACGAGAAATGGGATCTGGCCAGGA
CCATGATGAGATATGCGCGCAGTGGGCGCCCCTTGAATGGGACATCAGCG
CCACCCCCGTGGGTGGCATTTGGCCGAAAAATCGATAGCAACGCCGAAAG
CGAAATGAACTTTAAGAGCCTGGGCGAGGGCGACAAGGACAAGCCGGCAA
AGGAGAACGAAGAGTTCAATGCCATGCGCACAGAGGCCATTGCCGTGGCC
ACCAAGGCCGGCGGCAAGAAGATCTTTGGCGGCGGTGGCCAGAACATTAT
CGATCACAATGTTAAGAAGATCCTAGACAAGGGCTTCAGCGAGGAGGAGG
CCCGCAGTGCCTTATCTGCTACCCGAAACAACTTGGAGCGCGCCCTATAC
AATCTAAAAAGACGCAATGAAGCTGGCGGTGTGGGTCCGATCGAATCCGT
GGGTCGTCCGGGACGCGGAGATCGTCCGCCCAGAAAGGGAAAGCGGGGAG
CTAGGCGCCAA

BS11211.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13472-PA 2511 CG13472-RA 1..938 17..954 4615 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-RA 2644 CG13472-RA 57..1000 17..961 4655 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14787093..14787910 137..954 4045 99.6 Plus
3L 28110227 3L 14786933..14787018 51..136 430 100 Plus
3L 28110227 3L 14786847..14786884 17..54 190 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:05:57 has no hits.

BS11211.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:05 Download gff for BS11211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13472-PA 1..942 17..959 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:19 Download gff for BS11211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13472-PA 1..942 17..959 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:15 Download gff for BS11211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 57..998 17..959 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:04 Download gff for BS11211.5prime
Subject Subject Range Query Range Percent Splice Strand
Tdrd3-RA 57..998 17..959 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:04 Download gff for BS11211.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14786847..14786881 17..51 100 -> Plus
3L 14786934..14787018 52..136 100 -> Plus
3L 14787093..14787914 137..959 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:15 Download gff for BS11211.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14779947..14779981 17..51 100 -> Plus
arm_3L 14780034..14780118 52..136 100 -> Plus
arm_3L 14780193..14781014 137..959 99   Plus

BS11211.complete Sequence

2543 bp assembled on 2008-08-15

GenBank Submission: KX806357

> BS11211.complete
GAAGTTATCAGTCGACATGGAATTAGGCAAGAAACTACGAGAAGTCGGGT
GGTACCTGACAGAGGAGGGCCTTAAAATCGTGACAACAGCCGTCGGCAGC
GAGGATGTCCGGAAAATAGTCAATGATGCACTGAATCGAGATCTGCGCGA
TATTGGCGGTGGCGCACTGCCCGCGAAACGCGAAGATGCCACTTTGCCCG
GTAAAATTGTGCTGCAGGTTCAGCGTGTGCGAAATATTGCCGCTCCCAAG
GCGAATGAGGAATCGAAGGCGGCGCCACGCCTCCTTCAGTTGGATCTGAG
TGATGGGCAGAATTCCATAAAGGCCTTGGAGCTGGAGCCAGTTCCCCAAC
TGAATCTCAATGTGGCTCCCGGAAGCAAGATCTATTTCAAGGCCGAGAAA
CTGCAGCTTATGCAGGGATTCCTGCTGCTAAAGTCCAGTGAAATTCAGCT
GCTCGGCGGCCGTGTGGATGCACTCTACGAGAAATGGGATCTGGCCAGGA
CCATGATGAGATATGCGCGCAGTGGGCGCCCCTTGAATGGGACATCAGCG
CCACCCCCGTGGGTGGCATTTGGCCGAAAAATCGATAGCAACGCCGAAAG
CGAAATGAACTTTAAGAGCCTGGGCGAGGGCGACAAGGACAAGCCGGCAA
AGGAGAACGAAGAGTTCAATGCCATGCGCACAGAGGCCATTGCCGTGGCC
ACCAAGGCCGGCGGCAAGAAGATCTTTGGCGGCGGTGGCCAGAACATTAT
CGATCACAATGTTAAGAAGATCCTAGACAAGGGCTTCAGCGAGGAGGAGG
CCCGCAGTGCCTTATCTGCTACCCGAAACAACTTGGAGCGCGCCCTATAC
AATCTAAAAAGACGCAGTGAAGCTGGCGGTGTGGGTCCGATCGAATCCGT
GGGTCGTCCGGGACGCGGAGATCGTCCGCCCAGAGAGGGAAAGCGTGGAG
CTAGCGCCAAGGACGAAGTTGAAGCACCCAAGCCGGCTGCCAACACCACG
CTGTTTGATTTCCTAACCAATAAACTGCCCGCCAAGGAAACACCGGCCGC
TAGTAATGCAGAAACCTTCGCTGCCGCTCCAACTGCCGCTCCGACTGCCC
CACCCACTACCAATCACTTCAATCCATTTAAGCAATATGGAAGCTCGCGC
TTCAGCGATTCCGAGAGCAAACCTTCAGCTATGGGCGGAGGCGGCAAGTT
TGCAGATCGTTCTAGGTTTGAGAACAACGTATCGAGCAGCTTTGCCGCAC
ATCGTGGTGGACATGTGGGTTCGTCGCGAGGCGGTGGCCGTAACCGGGGT
GGCGGCAGGGACGAAAGGCCACCAAGAGAGGAGCGAGCCTACAGGGAAGA
CAGGCCTCCGAGGGAAGAAAAACCGCCGAAAGAGGAGAGACCACCGCGAG
AGCGAGGAGCGTTCAATGATCGTGCAGCTGGACGTTACAAACCAGAAACG
CCAACCGTAAAAACCGCAAATCGCAATGGCTCGGATAACGTATCGTTGAA
ACCGAATTCCGAGATTAAGCCAGATCATGAAACAACCAATGGGAAGGACC
ACACTGGCAACCGACGTGGCAGCGAACGAGGCAGCAATCGTGGAGGCTCC
AATCGAGCAGAGAACGGCAACGCCAATGGCAACAGACGAAACAAGCCGGC
AGCAAGCTTAACTTCGGCGAGTTCTGCAGCGAAATCGACAAATAGTGCTG
GCGATGATTTCAACGCCCGTTTGAGTAAGATAACCGAGGAAACAGCTAAT
CTCAAGGTGAGCAGTGCGCCAAAGCGAGAGAATCGACGTAAGCAAGGAGG
ACAAGCCAATCGCCTGGCGGGATCGGGCACAGAAACAACGCAGCAGCAGC
AGCCAGCACAGTTGCATTCGCAGAAGCCAGAGAAGGCTCAAACCAACCAA
AAGCATCACAATCCCAGGCACAATTCGCAGGCGAACTACAGTCAATTGGC
GAATGGCTACACTTACGATCCCAGCAAGATCATGGGTTTCCAGAGCAAGG
AGGCCAACGAGTTTGCCATGAACCTTCTAAAGAGCCAGGGTGTTACACTG
CCCAACGAAAAACAACAGGAGGAGGAACAGCAGGAATCGCCACCCATGTC
CTTTGGCCCCGTTTCCGCTCCTGTTTCCCGTGCGCAACCTGCTCCAGTGG
CTGTGCCACAGGCTGCGCCACGGGATCAGTTCGGCATGGTGCCAGGCGAT
GCGTGGATGTGGCAGAAGGGCGACTTGTGCATGGCCAAGTATTGGGACGA
TGGAAGGTATTATGAGGCTGAGATCACGGGCGTGTCGGAGAAAACTTGCG
TGGTCTTCTTTATGGGCTATGGAAACCATGAGGAGGTATTGAAGGTCGAC
ATCCTGCCCATCACCGATGCCCAAAACAGGCCACTGAGCAACTCAGCGCA
GCAGCAGCAACCGCATCTGCAGCAACAGCAACCGCATCTACAGCAGCAGC
AACATTCACGCTACCGCGGAGATCGTCAGACGCAGCAGCAGCAAGTCTAC
GTGCCGCCCCACAAACGAGAGCATTGAAAGCTTTCTAGACCAT

BS11211.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-RA 2511 CG13472-PA 1..2511 17..2527 12555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-RA 2644 CG13472-RA 57..2567 17..2527 12555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14787093..14789213 137..2257 10605 100 Plus
3L 28110227 3L 14789318..14789588 2257..2527 1355 100 Plus
3L 28110227 3L 14786933..14787018 51..136 430 100 Plus
3L 28110227 3L 14786847..14786884 17..54 190 100 Plus
Blast to na_te.dros performed 2014-11-27 12:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..6899 2387..2531 230 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6830 2387..2495 210 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6928 2399..2521 201 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2468 2398..2494 195 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6834 2406..2523 195 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2416 2399..2493 186 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2857 2399..2496 169 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2515 2399..2496 165 64.5 Plus
roo 9092 roo DM_ROO 9092bp 1061..1116 2399..2454 163 76.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2432 1830..1923 150 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6673..6824 2379..2531 132 54.9 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 643..728 2493..2402 121 64.1 Minus

BS11211.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:40 Download gff for BS11211.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 55..2565 17..2527 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:35:35 Download gff for BS11211.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 57..2566 17..2526 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:15 Download gff for BS11211.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 55..2564 17..2526 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:29 Download gff for BS11211.complete
Subject Subject Range Query Range Percent Splice Strand
Tdrd3-RA 57..2566 17..2526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:29 Download gff for BS11211.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14786847..14786881 17..51 100 -> Plus
3L 14786934..14787018 52..136 100 -> Plus
3L 14787093..14789213 137..2257 100 -> Plus
3L 14789319..14789587 2258..2526 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:35:35 Download gff for BS11211.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14779947..14779981 17..51 100 -> Plus
arm_3L 14780034..14780118 52..136 100 -> Plus
arm_3L 14780193..14782313 137..2257 100 -> Plus
arm_3L 14782419..14782687 2258..2526 100   Plus

BS11211.pep Sequence

Translation from 16 to 2526

> BS11211.pep
MELGKKLREVGWYLTEEGLKIVTTAVGSEDVRKIVNDALNRDLRDIGGGA
LPAKREDATLPGKIVLQVQRVRNIAAPKANEESKAAPRLLQLDLSDGQNS
IKALELEPVPQLNLNVAPGSKIYFKAEKLQLMQGFLLLKSSEIQLLGGRV
DALYEKWDLARTMMRYARSGRPLNGTSAPPPWVAFGRKIDSNAESEMNFK
SLGEGDKDKPAKENEEFNAMRTEAIAVATKAGGKKIFGGGGQNIIDHNVK
KILDKGFSEEEARSALSATRNNLERALYNLKRRSEAGGVGPIESVGRPGR
GDRPPREGKRGASAKDEVEAPKPAANTTLFDFLTNKLPAKETPAASNAET
FAAAPTAAPTAPPTTNHFNPFKQYGSSRFSDSESKPSAMGGGGKFADRSR
FENNVSSSFAAHRGGHVGSSRGGGRNRGGGRDERPPREERAYREDRPPRE
EKPPKEERPPRERGAFNDRAAGRYKPETPTVKTANRNGSDNVSLKPNSEI
KPDHETTNGKDHTGNRRGSERGSNRGGSNRAENGNANGNRRNKPAASLTS
ASSAAKSTNSAGDDFNARLSKITEETANLKVSSAPKRENRRKQGGQANRL
AGSGTETTQQQQPAQLHSQKPEKAQTNQKHHNPRHNSQANYSQLANGYTY
DPSKIMGFQSKEANEFAMNLLKSQGVTLPNEKQQEEEQQESPPMSFGPVS
APVSRAQPAPVAVPQAAPRDQFGMVPGDAWMWQKGDLCMAKYWDDGRYYE
AEITGVSEKTCVVFFMGYGNHEEVLKVDILPITDAQNRPLSNSAQQQQPH
LQQQQPHLQQQQHSRYRGDRQTQQQQVYVPPHKREH*

BS11211.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-PA 836 CG13472-PA 1..836 1..836 4363 100 Plus