Clone BS11219 Report

Search the DGRC for BS11219

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptJon25Bi-RB
Protein status:BS11219.pep: gold
Sequenced Size:16

Clone Sequence Records

BS11219.3prime Sequence

848 bp (780 high quality bases) assembled on 2006-04-18

> BS11219.3prime
ATGGTCTAGAAAGCTTTTAGTAGTAAGCAACGCCGGAGTTGTCGCGGATC
CAGTCCAGCTGGTTGGTAACACGGGTGAATCCGGAGGGCAGGCCAGCGGT
GCAACCGTTGCCGGAAACCCAGGAGGTGACACCCACCAGGCGGCCACCGT
CGTGGAGAACCAGGGGGCCACCGGAGTCACCGGAGCAGGTGGACTTTCCG
CCGGAGGTGGACACACAGAGGATGCCATCGGGCTGGGTGCCGTAGGTGCG
GGAGCATTCCGAGTTGCTAATGATCTGCAGGTCGACGCACTCCATCCAAT
CGGGCTGGGATCCGGCGGTGGTCAGTCCCCAACCGCAGGCGACGGCCCAA
TAGTTGTCGTACATGTTGTAGCGATCGTTGAAGCTGGGCAGCTCCACCTT
GTTAACCATGTGCCAGAAGTCCACGTGGGGGGTGCGGATCAAGGCGATGT
CGTTGCCGTTCTGGTTGGGCCAGTTGTGGTTCTGGATGAAGTCGCCGCTG
CCGACGGTGTGGGTGAACTGGGCGTTGGTGCGCCAGGTGGCTCCGTAGTA
GATGGTCACCTGGGAGGCGCCGTTGGTGCAGTGAGCAGCAGTCAGGACCC
AATCGTGGGCGATGATAGAACCACCGCACCACCAGCCGCCGTTGCCGCTG
AAGCCCAGACCCACGGTGTAGGGAGCCTTGCCCTCGTAGGCTGGATATCC
GTTCACAATGCGGCCATTGATCTTGGTGTCCTTGGGCAGGTCCTTGGGAT
GAACCTGCTGGACAGTCTCGGCGGAGACAGCGGCCAAAGCCAGAGCCAGT
ACAACGAACACTTTCATGGTGATTGGATCAATCATGTCGACTGATAAC

BS11219.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8867-PA 801 Jon25Bi-RA 1..801 817..17 4005 100 Minus
CG8867-PB 801 Jon25Bi-RB 1..801 817..17 4005 100 Minus
CG7170-PA 789 Jon66Cii-RA 373..438 430..365 280 96.9 Minus
CG7118-PA 783 Jon66Ci-RA 361..426 430..365 280 96.9 Minus
CG8871-PA 777 Jon25Biii-RA 346..430 448..364 225 90.5 Minus
CG18030-PA 804 Jon99Fi-RA 369..456 455..368 215 89.7 Minus
CG2229-PA 804 Jon99Fii-RA 369..456 455..368 215 89.7 Minus
CG8871-PA 777 Jon25Biii-RA 271..327 541..485 210 94.7 Minus
CG7170-PA 789 Jon66Cii-RA 269..312 552..509 195 97.7 Minus
CG7170-PA 789 Jon66Cii-RA 142..183 685..644 185 97.6 Minus
CG7170-PA 789 Jon66Cii-RA 180..224 641..597 175 95.5 Minus
CG8871-PA 777 Jon25Biii-RA 175..224 637..588 175 94 Minus
CG7118-PA 783 Jon66Ci-RA 257..300 552..509 170 95.4 Minus
CG6580-PA 780 Jon65Aii-RA 336..378 455..413 165 95.3 Minus
CG7118-PA 783 Jon66Ci-RA 133..174 685..644 160 95.2 Minus
CG8869-PA 831 Jon25Bii-RA 133..189 703..647 160 91.2 Minus
CG31034-PA 798 Jon99Cii-RA 121..176 694..639 155 91 Minus
CG8579-PA 816 Jon44E-RA 424..463 403..364 150 95 Minus
CG18030-PA 804 Jon99Fi-RA 127..165 694..656 145 94.8 Minus
CG8869-PA 831 Jon25Bii-RA 408..456 434..386 145 91.8 Minus
CG8579-PA 816 Jon44E-RA 372..414 455..413 140 93 Minus
CG8871-PA 777 Jon25Biii-RA 132..173 686..645 135 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Bi-RB 866 CG8867-RB 6..822 833..17 4085 100 Minus
Jon25Biii-RA 827 CG8871-RA 92..544 745..272 735 78.5 Minus
Jon66Ci-RA 838 CG7118-RA 88..801 748..17 710 74.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4954323..4955139 17..833 4085 100 Plus
3R 32079331 3R 29922353..29922691 703..368 625 79.6 Minus
3R 32079331 3R 29924138..29924476 368..703 625 79.6 Plus
2L 23513712 2L 4950282..4950676 327..745 615 77.6 Plus
3R 32079331 3R 30489083..30489443 725..368 615 78.7 Minus
3R 32079331 3R 30487448..30487808 368..725 585 78.1 Plus
2R 25286936 2R 8691573..8691974 725..321 520 75.8 Minus
2L 23513712 2L 4952659..4953001 386..722 460 77 Plus
2L 23513712 2L 4952305..4952475 41..211 345 80.1 Plus
3R 32079331 3R 30487112..30487283 32..203 215 75 Plus
3R 32079331 3R 30489608..30489698 203..113 200 81.3 Minus
Blast to na_te.dros performed on 2015-02-09 04:05:13 has no hits.

BS11219.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:16 Download gff for BS11219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8867-PA 1..801 17..817 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:34 Download gff for BS11219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8867-PB 1..801 17..817 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:01:06 Download gff for BS11219.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Bi-RB 1..826 11..837 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:30:58 Download gff for BS11219.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Bi-RB 1..826 11..837 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:30:58 Download gff for BS11219.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4954319..4955147 11..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:01:06 Download gff for BS11219.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4954319..4955147 11..843 99   Plus

BS11219.5prime Sequence

849 bp (831 high quality bases) assembled on 2006-04-18

> BS11219.5prime
GAAGTTATCAGTCGACATGATTGATCCAATCACCATGAAAGTGTTCGTTG
TACTGGCTCTGGCTTTGGCCGCTGTCTCCGCCGAGACTGTCCAGCAGGTT
CATCCCAAGGACCTGCCCAAGGACACCAAGATCAATGGCCGCATTGTGAA
CGGATATCCAGCCTACGAGGGCAAGGCTCCCTACACCGTGGGTCTGGGCT
TCAGCGGCAACGGCGGCTGGTGGTGCGGTGGTTCTATCATCGCCCACGAT
TGGGTCCTGACTGCTGCTCACTGCACCAACGGCGCCTCCCAGGTGACCAT
CTACTACGGAGCCACCTGGCGCACCAACGCCCAGTTCACCCACACCGTCG
GCAGCGGCGACTTCATCCAGAACCACAACTGGCCCAACCAGAACGGCAAC
GACATCGCCTTGATCCGCACCCCCCACGTGGACTTCTGGCACATGGTTAA
CAAGGTGGAGCTGCCCAGCTTCAACGATCGCTACAACATGTACGACAACT
ATTGGGCCGTCGCCTGCGGTTGGGGACTGACCACCGCCGGATCCCAGCCC
GATTGGATGGAGTGCGTCGACCTGCAGATCATTAGCAACTCGGAATGCTC
CCGCACCTACGGCACCCAGCCCGATGGCATCCTCTGTGTGTCCACCTCCG
GCGGAAAGTCCACCTGCTCCGGTGACTCCGGTGGCCCCCTGGTTCTCCAC
GACGGTGGCCGCCTGGTGGGTGTCACCTCCTGGGTTTCCGGCAACGGTTG
CACCGCTGGCCTGCCCTCCGGATTCACCCGTGTTACCAACCAGCTGGACT
GGATCCGCGACAACTCCGGCGTTGCTTACTACTAAAAGCTTTCTAGACC

BS11219.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8867-PA 801 Jon25Bi-RA 1..801 35..835 4005 100 Plus
CG8867-PB 801 Jon25Bi-RB 1..801 35..835 4005 100 Plus
CG7170-PA 789 Jon66Cii-RA 373..438 422..487 280 96.9 Plus
CG7118-PA 783 Jon66Ci-RA 361..426 422..487 280 96.9 Plus
CG8871-PA 777 Jon25Biii-RA 346..430 404..488 225 90.5 Plus
CG18030-PA 804 Jon99Fi-RA 369..456 397..484 215 89.7 Plus
CG2229-PA 804 Jon99Fii-RA 369..456 397..484 215 89.7 Plus
CG8871-PA 777 Jon25Biii-RA 271..327 311..367 210 94.7 Plus
CG7170-PA 789 Jon66Cii-RA 269..312 300..343 195 97.7 Plus
CG7170-PA 789 Jon66Cii-RA 142..183 167..208 185 97.6 Plus
CG7170-PA 789 Jon66Cii-RA 180..224 211..255 175 95.5 Plus
CG8871-PA 777 Jon25Biii-RA 175..224 215..264 175 94 Plus
CG7118-PA 783 Jon66Ci-RA 257..300 300..343 170 95.4 Plus
CG6580-PA 780 Jon65Aii-RA 336..378 397..439 165 95.3 Plus
CG7118-PA 783 Jon66Ci-RA 133..174 167..208 160 95.2 Plus
CG8869-PA 831 Jon25Bii-RA 133..189 149..205 160 91.2 Plus
CG31034-PA 798 Jon99Cii-RA 121..176 158..213 155 91 Plus
CG8579-PA 816 Jon44E-RA 424..463 449..488 150 95 Plus
CG18030-PA 804 Jon99Fi-RA 127..165 158..196 145 94.8 Plus
CG8869-PA 831 Jon25Bii-RA 408..456 418..466 145 91.8 Plus
CG8579-PA 816 Jon44E-RA 372..414 397..439 140 93 Plus
CG8871-PA 777 Jon25Biii-RA 132..173 166..207 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Bi-RB 866 CG8867-RB 6..822 19..835 4085 100 Plus
Jon25Biii-RA 827 CG8871-RA 92..544 107..580 735 78.5 Plus
Jon66Ci-RA 838 CG7118-RA 88..801 104..835 710 74.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4954323..4955139 835..19 4085 100 Minus
3R 32079331 3R 29924138..29924476 484..149 625 79.6 Minus
3R 32079331 3R 29922353..29922691 149..484 625 79.6 Plus
2L 23513712 2L 4950282..4950676 525..107 615 77.6 Minus
3R 32079331 3R 30489083..30489443 127..484 615 78.7 Plus
3R 32079331 3R 30487448..30487808 484..127 585 78.1 Minus
2R 25286936 2R 8691573..8691974 127..531 520 75.8 Plus
2L 23513712 2L 4952659..4953001 466..130 460 77 Minus
2L 23513712 2L 4952305..4952475 811..641 345 80.1 Minus
3R 32079331 3R 30487112..30487283 820..649 215 75 Minus
3R 32079331 3R 30489608..30489698 649..739 200 81.3 Plus
Blast to na_te.dros performed on 2015-02-12 11:07:09 has no hits.

BS11219.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:17 Download gff for BS11219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8867-PA 1..801 35..835 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:36 Download gff for BS11219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8867-PB 1..801 35..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:14 Download gff for BS11219.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Bi-RB 1..826 15..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:30 Download gff for BS11219.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Bi-RB 1..826 15..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:30 Download gff for BS11219.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4954319..4955147 9..841 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:14 Download gff for BS11219.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4954319..4955147 9..841 99   Minus

BS11219.complete Sequence

851 bp assembled on 2006-11-01

GenBank Submission: FJ636787

> BS11219.complete
GAAGTTATCAGTCGACATGATTGATCCAATCACCATGAAAGTGTTCGTTG
TACTGGCTCTGGCTTTGGCCGCTGTCTCCGCCGAGACTGTCCAGCAGGTT
CATCCCAAGGACCTGCCCAAGGACACCAAGATCAATGGCCGCATTGTGAA
CGGATATCCAGCCTACGAGGGCAAGGCTCCCTACACCGTGGGTCTGGGCT
TCAGCGGCAACGGCGGCTGGTGGTGCGGTGGTTCTATCATCGCCCACGAT
TGGGTCCTGACTGCTGCTCACTGCACCAACGGCGCCTCCCAGGTGACCAT
CTACTACGGAGCCACCTGGCGCACCAACGCCCAGTTCACCCACACCGTCG
GCAGCGGCGACTTCATCCAGAACCACAACTGGCCCAACCAGAACGGCAAC
GACATCGCCTTGATCCGCACCCCCCACGTGGACTTCTGGCACATGGTTAA
CAAGGTGGAGCTGCCCAGCTTCAACGATCGCTACAACATGTACGACAACT
ATTGGGCCGTCGCCTGCGGTTGGGGACTGACCACCGCCGGATCCCAGCCC
GATTGGATGGAGTGCGTCGACCTGCAGATCATTAGCAACTCGGAATGCTC
CCGCACCTACGGCACCCAGCCCGATGGCATCCTCTGTGTGTCCACCTCCG
GCGGAAAGTCCACCTGCTCCGGTGACTCCGGTGGCCCCCTGGTTCTCCAC
GACGGTGGCCGCCTGGTGGGTGTCACCTCCTGGGTTTCCGGCAACGGTTG
CACCGCTGGCCTGCCCTCCGGATTCACCCGTGTTACCAACCAGCTGGACT
GGATCCGCGACAACTCCGGCGTTGCTTACTACTAAAAGCTTTCTAGACCA
T

BS11219.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Bi-RB 801 CG8867-PB 1..801 35..835 4005 100 Plus
Jon99Ciii-RB 798 CG31362-PB 112..450 149..484 625 79.6 Plus
Jon99Ciii-RA 798 CG31362-PA 112..450 149..484 625 79.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Bi-RB 866 CG8867-RB 6..822 19..835 4085 100 Plus
Jon99Ciii-RB 1240 CG31362-RB 138..476 149..484 625 79.6 Plus
Jon99Ciii-RA 837 CG31362-RA 138..476 149..484 625 79.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4954323..4955139 835..19 4085 100 Minus
3R 32079331 3R 29922353..29922691 149..484 625 79.6 Plus
3R 32079331 3R 29924138..29924476 484..149 625 79.6 Minus
2L 23513712 2L 4950282..4950676 525..107 615 77.6 Minus
3R 32079331 3R 30489083..30489443 127..484 615 78.7 Plus
3R 32079331 3R 30487448..30487808 484..127 585 78.1 Minus
2R 25286936 2R 8691573..8691974 127..531 520 75.8 Plus
2L 23513712 2L 4952659..4953001 466..130 460 77 Minus
3L 28110227 3L 8392858..8393296 835..400 445 74.5 Minus
3L 28110227 3L 8393335..8393523 343..149 400 81.5 Minus
3L 28110227 3L 8391627..8391881 104..367 395 78.4 Plus
3L 28110227 3L 8391897..8392022 401..526 375 86.5 Plus
2L 23513712 2L 4952305..4952475 811..641 345 80.1 Minus
3L 28110227 3L 6052747..6052838 397..488 295 88 Plus
3R 32079331 3R 30487112..30487283 820..649 215 75 Minus
3L 28110227 3L 6053975..6054062 488..401 215 83 Minus
3R 32079331 3R 30489608..30489698 649..739 200 81.3 Plus
3L 28110227 3L 6050965..6051030 211..276 195 86.4 Plus
3L 28110227 3L 6035438..6035502 218..282 190 86.2 Plus
Blast to na_te.dros performed on 2014-11-27 13:52:47 has no hits.

BS11219.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:14 Download gff for BS11219.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Bi-RB 1..801 35..835 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:35 Download gff for BS11219.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Bi-RA 207..1035 9..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:35 Download gff for BS11219.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Bi-RB 4..820 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:14 Download gff for BS11219.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Bi-RB 1..824 16..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:40 Download gff for BS11219.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Bi-RB 4..820 17..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:40 Download gff for BS11219.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4954325..4955141 17..833 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:35 Download gff for BS11219.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4954325..4955141 17..833 99   Minus

BS11219.pep Sequence

Translation from 16 to 834

> BS11219.pep
MIDPITMKVFVVLALALAAVSAETVQQVHPKDLPKDTKINGRIVNGYPAY
EGKAPYTVGLGFSGNGGWWCGGSIIAHDWVLTAAHCTNGASQVTIYYGAT
WRTNAQFTHTVGSGDFIQNHNWPNQNGNDIALIRTPHVDFWHMVNKVELP
SFNDRYNMYDNYWAVACGWGLTTAGSQPDWMECVDLQIISNSECSRTYGT
QPDGILCVSTSGGKSTCSGDSGGPLVLHDGGRLVGVTSWVSGNGCTAGLP
SGFTRVTNQLDWIRDNSGVAYY*

BS11219.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Bi-PB 266 CG8867-PB 1..266 7..272 1480 100 Plus
Jon25Biii-PA 258 CG8871-PA 1..258 7..271 951 66.7 Plus
Jon66Ci-PA 260 CG7118-PA 1..260 7..272 940 68.3 Plus
Jon66Cii-PA 262 CG7170-PA 1..262 7..272 920 65.9 Plus
Jon99Fii-PA 267 CG2229-PA 1..267 7..271 913 64.2 Plus