Clone Sequence Records
BS11221.3prime Sequence
912 bp (806 high quality bases) assembled on 2006-04-18
> BS11221.3prime
ATGGTCTAGAAAGCTTTTAGATCAGCGCCGTTATCAGCTTGGCCTTGAAG
TTCACGAACTTCTCGCTGGTGGCCGCAACGCGCAGAATCAAATCCTGGAC
GAGATTGGCCAGACCGCGATTGGCCAGCACCACGAGGCGCGTGACTGGGC
CGGGAATGCCCTCGGTGTAGCCATCGGCGTTGCGAGTGCTATCGCCATCG
GCGTCACCATCGCCGCCCAAACTGCCGCTGCTACTGCTGCTGCCTGCACT
GCCGCCCACCGAGTTGGCCGCCTCATCGCCCTGCTGGGTCTGAACACTGC
CCGAAAAGAGCCTCACCACATCCAGCAGGAAGTTGCCGGAGCCGCCGGCT
CCCAGAGCATTGCCACTGGGCGAACCTCCTGCACCGCCGCTTGAGCCGCC
GGCGAGACCCGCACCGCCAAAGCTGAGGAACCTTTTGAACAGATTACTCT
TGTTGCGATCGTCCAGATCGGCGGTCTCCTCCGCAGAGTCTAGGGTGAGT
TCATCGATCGCCGGCGACTTGGACTCGGAGAGCTGGAGATCATTGGTGCT
CAGGGCCTTTTCGTTCACACCGGAGGACGGCGAGACACTGGGCAGTTCGT
TGTTGAAGCTCAGCTGGATGGGCTCGTTGGATTTGAGGGGAATGGGAGCC
TGGGCGACCGGCGAGGAGGCGGAGGACGAGGATGGGGACAGGGACTGGGC
GGCAACTGCGGCGGCGGCTGCTTCCGCCTCCTTCACCTGGCGGGCCACAC
GGATTGTCTCCTCCAATTGCTTGTTGATGGCCGACAAATCGATCTGGGTA
TCAGTGGCTTCATTCTTGGTGATGTCGGGGAAAAGTTCGCGCAGCAGTCC
AATCGTTCGTTTGTTGCGATCGGCTATCAATGATTCTTGGTCTTTTGGGG
CCCAATGTCAAG
BS11221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-PA | 1050 | CG32694-RA | 172..1050 | 895..17 | 4345 | 99.7 | Minus |
CG32694-PC | 1050 | CG32694-RC | 172..1050 | 895..17 | 4345 | 99.7 | Minus |
CG32694-PD | 564 | CG32694-RD | 172..252 | 895..815 | 405 | 100 | Minus |
CG32694-PB | 1095 | CG32694-RB | 172..252 | 895..815 | 405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-RC | 2528 | CG32694-RC | 490..1384 | 912..17 | 4410 | 99.6 | Minus |
CG32694-RA | 2440 | CG32694-RA | 402..1296 | 912..17 | 4410 | 99.6 | Minus |
CG32694-RF | 2425 | CG32694-RF | 402..1281 | 912..17 | 4175 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10004389..10004759 | 817..447 | 1840 | 99.7 | Minus |
X | 23542271 | X | 10005374..10005602 | 311..83 | 1130 | 99.6 | Minus |
X | 23542271 | X | 10005148..10005289 | 452..311 | 695 | 99.3 | Minus |
X | 23542271 | X | 9999204..9999300 | 912..815 | 425 | 98 | Minus |
X | 23542271 | X | 10005672..10005738 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 11:46:59 has no hits.
BS11221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:19 Download gff for
BS11221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-PC | 156..1050 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:38 Download gff for
BS11221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-PC | 156..1050 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:40:46 Download gff for
BS11221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 402..1296 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:14:36 Download gff for
BS11221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 402..1296 | 17..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:14:36 Download gff for
BS11221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9999204..9999300 | 815..912 | 97 | -> | Minus |
X | 10004392..10004759 | 447..814 | 99 | -> | Minus |
X | 10005154..10005289 | 311..446 | 100 | -> | Minus |
X | 10005375..10005602 | 83..310 | 99 | -> | Minus |
X | 10005673..10005738 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:40:46 Download gff for
BS11221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9893237..9893333 | 815..912 | 97 | -> | Minus |
arm_X | 9898425..9898792 | 447..814 | 99 | -> | Minus |
arm_X | 9899187..9899322 | 311..446 | 100 | -> | Minus |
arm_X | 9899408..9899635 | 83..310 | 99 | -> | Minus |
arm_X | 9899706..9899771 | 17..82 | 100 | | Minus |
BS11221.5prime Sequence
811 bp (772 high quality bases) assembled on 2006-04-18
> BS11221.5prime
GAAGTTATCAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGC
TCCTGATCCTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCG
CAGCCCGCCAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGC
CAATGGCAAGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAAT
CATTGATAGCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTT
TTCCCCGACATCACCAAGAATGGAGCCACTGATACCCAGATCGATTTGTC
GGCCATCAACAAGCAATTGGAGGAGACAATCCGTGTGGCCCGCCAGGTGA
AGGAGGCGGAAGCAGCCGCCGCCGCAGTTGCCGCCCAGTCCCTGTCCCCA
TCCTCGTCCTCCGCCTCCTCGCCGGTCGCCCAGGCTCCCATTCCCCTCAA
ATCCAACGAGCCCATCCAGCTGAGCTTCAACAACGAACTGCCCAGTGTCT
CGCCGTCCTCCGGTGTGAACGAAAAGGCCCTGAGCACCAATGATCTCCAG
CTCTCCGAGTCCAAGTCGCCGGCGATCGATGAACTCACCCTAGACTCTGC
GGAGGAGACCGCCGATCTGGACGATCGCAACAAGAGTAATCTGTTCAAAA
GGTTCCTCAGCTTTGGCGGTGCGGGTCTCGCCGGCGGCTCAAGCGGCGGT
GCAGGAGGTTCGCCCAGTGGCAATGCTCTGGGAGCCGGCGGCTCCGGCAA
CTTCCTGCTGGATGTGGTGAGGCTCTTTTCGGGCAGTGTTCAGACCCAGC
AGGGCGATGAG
BS11221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-PA | 1050 | CG32694-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG32694-PC | 1050 | CG32694-RC | 1..795 | 17..811 | 3975 | 100 | Plus |
CG32694-PB | 1095 | CG32694-RB | 1..252 | 17..268 | 1260 | 100 | Plus |
CG32694-PD | 564 | CG32694-RD | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-RC | 2528 | CG32694-RC | 334..1129 | 16..811 | 3980 | 100 | Plus |
CG32694-RA | 2440 | CG32694-RA | 246..1041 | 16..811 | 3980 | 100 | Plus |
CG32694-RF | 2425 | CG32694-RF | 246..1026 | 16..811 | 3745 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10004389..10004759 | 266..636 | 1855 | 100 | Plus |
X | 23542271 | X | 9993045..9993190 | 16..161 | 730 | 100 | Plus |
X | 23542271 | X | 10005148..10005289 | 631..772 | 695 | 99.3 | Plus |
X | 23542271 | X | 9999191..9999300 | 159..268 | 550 | 100 | Plus |
X | 23542271 | X | 10005374..10005413 | 772..811 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:23:51 has no hits.
BS11221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:20 Download gff for
BS11221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-PC | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:40 Download gff for
BS11221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-PC | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:24 Download gff for
BS11221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 243..1041 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:43 Download gff for
BS11221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 243..1041 | 9..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:43 Download gff for
BS11221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9993042..9993189 | 9..160 | 97 | -> | Plus |
X | 9999193..9999300 | 161..268 | 100 | -> | Plus |
X | 10004392..10004759 | 269..636 | 100 | -> | Plus |
X | 10005154..10005289 | 637..772 | 100 | -> | Plus |
X | 10005375..10005413 | 773..811 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:24 Download gff for
BS11221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9899187..9899322 | 637..772 | 100 | -> | Plus |
arm_X | 9899408..9899446 | 773..811 | 100 | | Plus |
arm_X | 9887075..9887222 | 9..160 | 97 | -> | Plus |
arm_X | 9893226..9893333 | 161..268 | 100 | -> | Plus |
arm_X | 9898425..9898792 | 269..636 | 100 | -> | Plus |
BS11221.complete Sequence
1082 bp assembled on 2006-11-01
GenBank Submission: FJ636788
> BS11221.complete
GAAGTTATCAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGC
TCCTGATCCTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCG
CAGCCCGCCAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGC
CAATGGCAAGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAAT
CATTGATAGCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTT
TTCCCCGACATCACCAAGAATGGAGCCACTGATACCCAGATCGATTTGTC
GGCCATCAACAAGCAATTGGAGGAGACAATCCGTGTGGCCCGCCAGGTGA
AGGAGGCGGAAGCAGCCGCCGCCGCAGTTGCCGCCCAGTCCCTGTCCCCA
TCCTCGTCCTCCGCCTCCTCGCCGGTCGCCCAGGCTCCCATTCCCCTCAA
ATCCAACGAGCCCATCCAGCTGAGCTTCAACAACGAACTGCCCAGTGTCT
CGCCGTCCTCCGGTGTGAACGAAAAGGCCCTGAGCACCAATGATCTCCAG
CTCTCCGAGTCCAAGTCGCCGGCGATCGATGAACTCACCCTAGACTCTGC
GGAGGAGACCGCCGATCTGGACGATCGCAACAAGAGTAATCTGTTCAAAA
GGTTCCTCAGCTTTGGCGGTGCGGGTCTCGCCGGCGGCTCAAGCGGCGGT
GCAGGAGGTTCGCCCAGTGGCAATGCTCTGGGAGCCGGCGGCTCCGGCAA
CTTCCTGCTGGATGTGGTGAGGCTCTTTTCGGGCAGTGTTCAGACCCAGC
AGGGCGATGAGGCGGCCAACTCGGTGGGCGGCAGTGCAGGCAGCAGCAGT
AGCAGCGGCAGTTTGGGCGGCGATGGTGACGCCGATGGCGATAGCACTCG
CAACGCCGATGGCTACACCGAGGGCATTCCCGGCCCAGTCACGCGCCTCG
TGGTGCTGGCCAATCGCGGTCTGGCCAATCTCGTCCAGGATTTGATTCTG
CGCGTTGCGGCCACCAGCGAGAAGTTCGTGAACTTCAAGGCCAAGCTGAT
AACGGCGCTGATCTAAAAGCTTTCTAGACCAT
BS11221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-RC | 1050 | CG32694-PC | 1..1050 | 17..1066 | 5235 | 99.9 | Plus |
CG32694-RA | 1050 | CG32694-PA | 1..1050 | 17..1066 | 5235 | 99.9 | Plus |
CG32694-RF | 1035 | CG32694-PF | 1..1035 | 17..1066 | 4975 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-RC | 2528 | CG32694-RC | 334..1384 | 16..1066 | 5240 | 99.9 | Plus |
CG32694-RA | 2440 | CG32694-RA | 246..1296 | 16..1066 | 5240 | 99.9 | Plus |
CG32694-RF | 2425 | CG32694-RF | 246..1281 | 16..1066 | 4980 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10004389..10004759 | 266..636 | 1855 | 100 | Plus |
X | 23542271 | X | 10005374..10005602 | 772..1000 | 1130 | 99.6 | Plus |
X | 23542271 | X | 9993045..9993190 | 16..161 | 730 | 100 | Plus |
X | 23542271 | X | 10005148..10005289 | 631..772 | 695 | 99.3 | Plus |
X | 23542271 | X | 9999191..9999300 | 159..268 | 550 | 100 | Plus |
X | 23542271 | X | 10005672..10005738 | 1000..1066 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:09:10 has no hits.
BS11221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:15 Download gff for
BS11221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RC | 1..1050 | 17..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:17 Download gff for
BS11221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RC | 335..1382 | 17..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:21 Download gff for
BS11221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 247..1294 | 17..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:15 Download gff for
BS11221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RC | 331..1384 | 9..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:05:03 Download gff for
BS11221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 247..1294 | 17..1064 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:05:03 Download gff for
BS11221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9993046..9993189 | 17..160 | 100 | -> | Plus |
X | 9999193..9999300 | 161..268 | 100 | -> | Plus |
X | 10004392..10004759 | 269..636 | 100 | -> | Plus |
X | 10005154..10005289 | 637..772 | 100 | -> | Plus |
X | 10005375..10005602 | 773..1000 | 99 | -> | Plus |
X | 10005673..10005736 | 1001..1064 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:21 Download gff for
BS11221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9887079..9887222 | 17..160 | 100 | -> | Plus |
arm_X | 9893226..9893333 | 161..268 | 100 | -> | Plus |
arm_X | 9898425..9898792 | 269..636 | 100 | -> | Plus |
arm_X | 9899187..9899322 | 637..772 | 100 | -> | Plus |
arm_X | 9899408..9899635 | 773..1000 | 99 | -> | Plus |
arm_X | 9899706..9899769 | 1001..1064 | 100 | | Plus |
BS11221.pep Sequence
Translation from 16 to 1065
> BS11221.pep
MRQPSRQHILALLILGSAACLISAVPLPQPANGNSELDVLQIPLANGKEI
DVLTLGAKDQESLIADRNKRTIGLLRELFPDITKNGATDTQIDLSAINKQ
LEETIRVARQVKEAEAAAAAVAAQSLSPSSSSASSPVAQAPIPLKSNEPI
QLSFNNELPSVSPSSGVNEKALSTNDLQLSESKSPAIDELTLDSAEETAD
LDDRNKSNLFKRFLSFGGAGLAGGSSGGAGGSPSGNALGAGGSGNFLLDV
VRLFSGSVQTQQGDEAANSVGGSAGSSSSSGSLGGDGDADGDSTRNADGY
TEGIPGPVTRLVVLANRGLANLVQDLILRVAATSEKFVNFKAKLITALI*
BS11221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-PC | 349 | CG32694-PC | 1..349 | 1..349 | 1707 | 100 | Plus |
CG32694-PA | 349 | CG32694-PA | 1..349 | 1..349 | 1707 | 100 | Plus |
CG32694-PF | 344 | CG32694-PF | 1..344 | 1..349 | 1666 | 98.6 | Plus |
CG32694-PG | 195 | CG32694-PG | 1..185 | 1..166 | 435 | 55.7 | Plus |
CG32694-PE | 187 | CG32694-PE | 1..142 | 1..135 | 429 | 70.4 | Plus |