Clone BS11221 Report

Search the DGRC for BS11221

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG32694-RA
Protein status:BS11221.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11221.3prime Sequence

912 bp (806 high quality bases) assembled on 2006-04-18

> BS11221.3prime
ATGGTCTAGAAAGCTTTTAGATCAGCGCCGTTATCAGCTTGGCCTTGAAG
TTCACGAACTTCTCGCTGGTGGCCGCAACGCGCAGAATCAAATCCTGGAC
GAGATTGGCCAGACCGCGATTGGCCAGCACCACGAGGCGCGTGACTGGGC
CGGGAATGCCCTCGGTGTAGCCATCGGCGTTGCGAGTGCTATCGCCATCG
GCGTCACCATCGCCGCCCAAACTGCCGCTGCTACTGCTGCTGCCTGCACT
GCCGCCCACCGAGTTGGCCGCCTCATCGCCCTGCTGGGTCTGAACACTGC
CCGAAAAGAGCCTCACCACATCCAGCAGGAAGTTGCCGGAGCCGCCGGCT
CCCAGAGCATTGCCACTGGGCGAACCTCCTGCACCGCCGCTTGAGCCGCC
GGCGAGACCCGCACCGCCAAAGCTGAGGAACCTTTTGAACAGATTACTCT
TGTTGCGATCGTCCAGATCGGCGGTCTCCTCCGCAGAGTCTAGGGTGAGT
TCATCGATCGCCGGCGACTTGGACTCGGAGAGCTGGAGATCATTGGTGCT
CAGGGCCTTTTCGTTCACACCGGAGGACGGCGAGACACTGGGCAGTTCGT
TGTTGAAGCTCAGCTGGATGGGCTCGTTGGATTTGAGGGGAATGGGAGCC
TGGGCGACCGGCGAGGAGGCGGAGGACGAGGATGGGGACAGGGACTGGGC
GGCAACTGCGGCGGCGGCTGCTTCCGCCTCCTTCACCTGGCGGGCCACAC
GGATTGTCTCCTCCAATTGCTTGTTGATGGCCGACAAATCGATCTGGGTA
TCAGTGGCTTCATTCTTGGTGATGTCGGGGAAAAGTTCGCGCAGCAGTCC
AATCGTTCGTTTGTTGCGATCGGCTATCAATGATTCTTGGTCTTTTGGGG
CCCAATGTCAAG

BS11221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-PA 1050 CG32694-RA 172..1050 895..17 4345 99.7 Minus
CG32694-PC 1050 CG32694-RC 172..1050 895..17 4345 99.7 Minus
CG32694-PD 564 CG32694-RD 172..252 895..815 405 100 Minus
CG32694-PB 1095 CG32694-RB 172..252 895..815 405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-RC 2528 CG32694-RC 490..1384 912..17 4410 99.6 Minus
CG32694-RA 2440 CG32694-RA 402..1296 912..17 4410 99.6 Minus
CG32694-RF 2425 CG32694-RF 402..1281 912..17 4175 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10004389..10004759 817..447 1840 99.7 Minus
X 23542271 X 10005374..10005602 311..83 1130 99.6 Minus
X 23542271 X 10005148..10005289 452..311 695 99.3 Minus
X 23542271 X 9999204..9999300 912..815 425 98 Minus
X 23542271 X 10005672..10005738 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-01 11:46:59 has no hits.

BS11221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:19 Download gff for BS11221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-PC 156..1050 17..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:38 Download gff for BS11221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-PC 156..1050 17..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:40:46 Download gff for BS11221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 402..1296 17..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:14:36 Download gff for BS11221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 402..1296 17..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:14:36 Download gff for BS11221.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9999204..9999300 815..912 97 -> Minus
X 10004392..10004759 447..814 99 -> Minus
X 10005154..10005289 311..446 100 -> Minus
X 10005375..10005602 83..310 99 -> Minus
X 10005673..10005738 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:40:46 Download gff for BS11221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9893237..9893333 815..912 97 -> Minus
arm_X 9898425..9898792 447..814 99 -> Minus
arm_X 9899187..9899322 311..446 100 -> Minus
arm_X 9899408..9899635 83..310 99 -> Minus
arm_X 9899706..9899771 17..82 100   Minus

BS11221.5prime Sequence

811 bp (772 high quality bases) assembled on 2006-04-18

> BS11221.5prime
GAAGTTATCAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGC
TCCTGATCCTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCG
CAGCCCGCCAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGC
CAATGGCAAGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAAT
CATTGATAGCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTT
TTCCCCGACATCACCAAGAATGGAGCCACTGATACCCAGATCGATTTGTC
GGCCATCAACAAGCAATTGGAGGAGACAATCCGTGTGGCCCGCCAGGTGA
AGGAGGCGGAAGCAGCCGCCGCCGCAGTTGCCGCCCAGTCCCTGTCCCCA
TCCTCGTCCTCCGCCTCCTCGCCGGTCGCCCAGGCTCCCATTCCCCTCAA
ATCCAACGAGCCCATCCAGCTGAGCTTCAACAACGAACTGCCCAGTGTCT
CGCCGTCCTCCGGTGTGAACGAAAAGGCCCTGAGCACCAATGATCTCCAG
CTCTCCGAGTCCAAGTCGCCGGCGATCGATGAACTCACCCTAGACTCTGC
GGAGGAGACCGCCGATCTGGACGATCGCAACAAGAGTAATCTGTTCAAAA
GGTTCCTCAGCTTTGGCGGTGCGGGTCTCGCCGGCGGCTCAAGCGGCGGT
GCAGGAGGTTCGCCCAGTGGCAATGCTCTGGGAGCCGGCGGCTCCGGCAA
CTTCCTGCTGGATGTGGTGAGGCTCTTTTCGGGCAGTGTTCAGACCCAGC
AGGGCGATGAG

BS11221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-PA 1050 CG32694-RA 1..795 17..811 3975 100 Plus
CG32694-PC 1050 CG32694-RC 1..795 17..811 3975 100 Plus
CG32694-PB 1095 CG32694-RB 1..252 17..268 1260 100 Plus
CG32694-PD 564 CG32694-RD 1..252 17..268 1260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-RC 2528 CG32694-RC 334..1129 16..811 3980 100 Plus
CG32694-RA 2440 CG32694-RA 246..1041 16..811 3980 100 Plus
CG32694-RF 2425 CG32694-RF 246..1026 16..811 3745 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10004389..10004759 266..636 1855 100 Plus
X 23542271 X 9993045..9993190 16..161 730 100 Plus
X 23542271 X 10005148..10005289 631..772 695 99.3 Plus
X 23542271 X 9999191..9999300 159..268 550 100 Plus
X 23542271 X 10005374..10005413 772..811 200 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:23:51 has no hits.

BS11221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:20 Download gff for BS11221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-PC 1..795 17..811 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:40 Download gff for BS11221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-PC 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:24 Download gff for BS11221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 243..1041 9..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:43 Download gff for BS11221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 243..1041 9..811 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:43 Download gff for BS11221.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9993042..9993189 9..160 97 -> Plus
X 9999193..9999300 161..268 100 -> Plus
X 10004392..10004759 269..636 100 -> Plus
X 10005154..10005289 637..772 100 -> Plus
X 10005375..10005413 773..811 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:24 Download gff for BS11221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9899187..9899322 637..772 100 -> Plus
arm_X 9899408..9899446 773..811 100   Plus
arm_X 9887075..9887222 9..160 97 -> Plus
arm_X 9893226..9893333 161..268 100 -> Plus
arm_X 9898425..9898792 269..636 100 -> Plus

BS11221.complete Sequence

1082 bp assembled on 2006-11-01

GenBank Submission: FJ636788

> BS11221.complete
GAAGTTATCAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGC
TCCTGATCCTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCG
CAGCCCGCCAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGC
CAATGGCAAGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAAT
CATTGATAGCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTT
TTCCCCGACATCACCAAGAATGGAGCCACTGATACCCAGATCGATTTGTC
GGCCATCAACAAGCAATTGGAGGAGACAATCCGTGTGGCCCGCCAGGTGA
AGGAGGCGGAAGCAGCCGCCGCCGCAGTTGCCGCCCAGTCCCTGTCCCCA
TCCTCGTCCTCCGCCTCCTCGCCGGTCGCCCAGGCTCCCATTCCCCTCAA
ATCCAACGAGCCCATCCAGCTGAGCTTCAACAACGAACTGCCCAGTGTCT
CGCCGTCCTCCGGTGTGAACGAAAAGGCCCTGAGCACCAATGATCTCCAG
CTCTCCGAGTCCAAGTCGCCGGCGATCGATGAACTCACCCTAGACTCTGC
GGAGGAGACCGCCGATCTGGACGATCGCAACAAGAGTAATCTGTTCAAAA
GGTTCCTCAGCTTTGGCGGTGCGGGTCTCGCCGGCGGCTCAAGCGGCGGT
GCAGGAGGTTCGCCCAGTGGCAATGCTCTGGGAGCCGGCGGCTCCGGCAA
CTTCCTGCTGGATGTGGTGAGGCTCTTTTCGGGCAGTGTTCAGACCCAGC
AGGGCGATGAGGCGGCCAACTCGGTGGGCGGCAGTGCAGGCAGCAGCAGT
AGCAGCGGCAGTTTGGGCGGCGATGGTGACGCCGATGGCGATAGCACTCG
CAACGCCGATGGCTACACCGAGGGCATTCCCGGCCCAGTCACGCGCCTCG
TGGTGCTGGCCAATCGCGGTCTGGCCAATCTCGTCCAGGATTTGATTCTG
CGCGTTGCGGCCACCAGCGAGAAGTTCGTGAACTTCAAGGCCAAGCTGAT
AACGGCGCTGATCTAAAAGCTTTCTAGACCAT

BS11221.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-RC 1050 CG32694-PC 1..1050 17..1066 5235 99.9 Plus
CG32694-RA 1050 CG32694-PA 1..1050 17..1066 5235 99.9 Plus
CG32694-RF 1035 CG32694-PF 1..1035 17..1066 4975 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-RC 2528 CG32694-RC 334..1384 16..1066 5240 99.9 Plus
CG32694-RA 2440 CG32694-RA 246..1296 16..1066 5240 99.9 Plus
CG32694-RF 2425 CG32694-RF 246..1281 16..1066 4980 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10004389..10004759 266..636 1855 100 Plus
X 23542271 X 10005374..10005602 772..1000 1130 99.6 Plus
X 23542271 X 9993045..9993190 16..161 730 100 Plus
X 23542271 X 10005148..10005289 631..772 695 99.3 Plus
X 23542271 X 9999191..9999300 159..268 550 100 Plus
X 23542271 X 10005672..10005738 1000..1066 335 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:09:10 has no hits.

BS11221.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:15 Download gff for BS11221.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RC 1..1050 17..1066 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:17 Download gff for BS11221.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RC 335..1382 17..1064 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:21 Download gff for BS11221.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 247..1294 17..1064 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:15 Download gff for BS11221.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RC 331..1384 9..1066 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:05:03 Download gff for BS11221.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 247..1294 17..1064 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:05:03 Download gff for BS11221.complete
Subject Subject Range Query Range Percent Splice Strand
X 9993046..9993189 17..160 100 -> Plus
X 9999193..9999300 161..268 100 -> Plus
X 10004392..10004759 269..636 100 -> Plus
X 10005154..10005289 637..772 100 -> Plus
X 10005375..10005602 773..1000 99 -> Plus
X 10005673..10005736 1001..1064 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:21 Download gff for BS11221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9887079..9887222 17..160 100 -> Plus
arm_X 9893226..9893333 161..268 100 -> Plus
arm_X 9898425..9898792 269..636 100 -> Plus
arm_X 9899187..9899322 637..772 100 -> Plus
arm_X 9899408..9899635 773..1000 99 -> Plus
arm_X 9899706..9899769 1001..1064 100   Plus

BS11221.pep Sequence

Translation from 16 to 1065

> BS11221.pep
MRQPSRQHILALLILGSAACLISAVPLPQPANGNSELDVLQIPLANGKEI
DVLTLGAKDQESLIADRNKRTIGLLRELFPDITKNGATDTQIDLSAINKQ
LEETIRVARQVKEAEAAAAAVAAQSLSPSSSSASSPVAQAPIPLKSNEPI
QLSFNNELPSVSPSSGVNEKALSTNDLQLSESKSPAIDELTLDSAEETAD
LDDRNKSNLFKRFLSFGGAGLAGGSSGGAGGSPSGNALGAGGSGNFLLDV
VRLFSGSVQTQQGDEAANSVGGSAGSSSSSGSLGGDGDADGDSTRNADGY
TEGIPGPVTRLVVLANRGLANLVQDLILRVAATSEKFVNFKAKLITALI*

BS11221.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-PC 349 CG32694-PC 1..349 1..349 1707 100 Plus
CG32694-PA 349 CG32694-PA 1..349 1..349 1707 100 Plus
CG32694-PF 344 CG32694-PF 1..344 1..349 1666 98.6 Plus
CG32694-PG 195 CG32694-PG 1..185 1..166 435 55.7 Plus
CG32694-PE 187 CG32694-PE 1..142 1..135 429 70.4 Plus