Clone Sequence Records
BS11223.5prime Sequence
570 bp (569 high quality bases) assembled on 2006-04-18
> BS11223.5prime
GAAGTTATCAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGAC
CCAATCCGGAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCT
GGCAAGACCACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGT
AACGCCCACGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCA
AACTGAATGTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGG
AAGAACTATTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTAC
AGATCGGACTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCA
TGGACAATCGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACAG
GATATGCCGGATGCCATGAGTGCCGCCGAGGTGGCCGAGAAGATGAGCTT
GGTGCAACTGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGG
ATGGCACTGGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAG
AAGTAAAAGCTTTCTAGACC
BS11223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6560-PA | 540 | CG6560-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-RA | 836 | CG6560-RA | 214..753 | 17..556 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21885759..21886035 | 556..280 | 1385 | 100 | Minus |
3R | 32079331 | 3R | 21886093..21886225 | 280..148 | 665 | 100 | Minus |
3R | 32079331 | 3R | 21886286..21886417 | 150..19 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:33:49 has no hits.
BS11223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:22 Download gff for
BS11223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:42 Download gff for
BS11223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:41:07 Download gff for
BS11223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..756 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:20 Download gff for
BS11223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..756 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:20 Download gff for
BS11223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21885756..21886034 | 281..561 | 98 | <- | Minus |
3R | 21886093..21886224 | 149..280 | 100 | <- | Minus |
3R | 21886288..21886417 | 19..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:41:07 Download gff for
BS11223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17711478..17711756 | 281..561 | 98 | <- | Minus |
arm_3R | 17711815..17711946 | 149..280 | 100 | <- | Minus |
arm_3R | 17712010..17712139 | 19..148 | 100 | | Minus |
BS11223.3prime Sequence
570 bp (569 high quality bases) assembled on 2006-04-18
> BS11223.3prime
ATGGTCTAGAAAGCTTTTACTTCTTCATATTCTTGCAGACCCAGTCCATT
CCCTCCTTTAGTCCAGTGCCATCCACAGCGGTACAGGCCTTGATCTCCCA
GGTTCGTCCCTGCAGTTGCACCAAGCTCATCTTCTCGGCCACCTCGGCGG
CACTCATGGCATCCGGCATATCCTGTTTGTTAGCGAAAATCAGCACGGGA
ACTTGCTTCAACCGATTGTCCATGAGCATTTCGAATAGTTCACTACCCGC
CTCGGGCAGGCGAGTCCGATCTGTACAGTCAATTACATAGATCAGCACAT
CAGTATTCGCAAAATAGTTCTTCCAATATGGACGTATCTTCCATTGACCA
CCAATATCCCATACATTCAGTTTGAAACCATCGGCTGCCACGGACTTGAT
GTTAAATCCTGCCGTGGGCGTTACCGTGGTTATGTCCTCCGATGCCAGCT
GCTTCAGTATCGTGGTCTTGCCAGCATTATCCAATCCTAGGAGCAGGATG
CGAGCCTCCTTTTCCGGATTGGGTCTCAGTTTACGCAACAGCGATAGCAG
ACCCATGTCGACTGATAACT
BS11223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6560-PA | 540 | CG6560-RA | 1..540 | 556..17 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-RA | 836 | CG6560-RA | 214..753 | 556..17 | 2700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21885759..21886035 | 17..293 | 1385 | 100 | Plus |
3R | 32079331 | 3R | 21886093..21886225 | 293..425 | 665 | 100 | Plus |
3R | 32079331 | 3R | 21886286..21886417 | 423..554 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:57:25 has no hits.
BS11223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:21 Download gff for
BS11223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:41 Download gff for
BS11223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:39:07 Download gff for
BS11223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..756 | 12..556 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:05:45 Download gff for
BS11223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..756 | 12..556 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:05:45 Download gff for
BS11223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21885756..21886034 | 12..292 | 98 | <- | Plus |
3R | 21886093..21886224 | 293..424 | 100 | <- | Plus |
3R | 21886288..21886417 | 425..554 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:39:07 Download gff for
BS11223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17711478..17711756 | 12..292 | 98 | <- | Plus |
arm_3R | 17711815..17711946 | 293..424 | 100 | <- | Plus |
arm_3R | 17712010..17712139 | 425..554 | 100 | | Plus |
BS11223.complete Sequence
572 bp assembled on 2006-11-01
GenBank Submission: FJ636789
> BS11223.complete
GAAGTTATCAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGAC
CCAATCCGGAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCT
GGCAAGACCACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGT
AACGCCCACGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCA
AACTGAATGTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGG
AAGAACTATTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTAC
AGATCGGACTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCA
TGGACAATCGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACAG
GATATGCCGGATGCCATGAGTGCCGCCGAGGTGGCCGAGAAGATGAGCTT
GGTGCAACTGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGG
ATGGCACTGGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAG
AAGTAAAAGCTTTCTAGACCAT
BS11223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-RA | 540 | CG6560-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-RA | 836 | CG6560-RA | 214..753 | 17..556 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21885759..21886035 | 556..280 | 1385 | 100 | Minus |
3R | 32079331 | 3R | 21886093..21886225 | 280..148 | 665 | 100 | Minus |
3R | 32079331 | 3R | 21886286..21886417 | 150..19 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:32:07 has no hits.
BS11223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:16 Download gff for
BS11223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-RA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:38 Download gff for
BS11223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-RA | 210..752 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:47 Download gff for
BS11223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..751 | 17..554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:16 Download gff for
BS11223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-RA | 210..752 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:50 Download gff for
BS11223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..751 | 17..554 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:50 Download gff for
BS11223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21886288..21886418 | 17..148 | 99 | | Minus |
3R | 21885761..21886034 | 281..554 | 100 | <- | Minus |
3R | 21886093..21886224 | 149..280 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:47 Download gff for
BS11223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17711483..17711756 | 281..554 | 100 | <- | Minus |
arm_3R | 17711815..17711946 | 149..280 | 100 | <- | Minus |
arm_3R | 17712010..17712140 | 17..148 | 99 | | Minus |
BS11223.pep Sequence
Translation from 16 to 555
> BS11223.pep
MGLLSLLRKLRPNPEKEARILLLGLDNAGKTTILKQLASEDITTVTPTAG
FNIKSVAADGFKLNVWDIGGQWKIRPYWKNYFANTDVLIYVIDCTDRTRL
PEAGSELFEMLMDNRLKQVPVLIFANKQDMPDAMSAAEVAEKMSLVQLQG
RTWEIKACTAVDGTGLKEGMDWVCKNMKK*
BS11223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-PA | 179 | CG6560-PA | 1..179 | 1..179 | 932 | 100 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 15..178 | 15..178 | 442 | 50.6 | Plus |
Arf79F-PI | 182 | CG8385-PI | 15..178 | 15..178 | 442 | 50.6 | Plus |
Arf79F-PH | 182 | CG8385-PH | 15..178 | 15..178 | 442 | 50.6 | Plus |
Arf79F-PF | 182 | CG8385-PF | 15..178 | 15..178 | 442 | 50.6 | Plus |