Clone BS11223 Report

Search the DGRC for BS11223

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptdnd-RA
Protein status:BS11223.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11223.5prime Sequence

570 bp (569 high quality bases) assembled on 2006-04-18

> BS11223.5prime
GAAGTTATCAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGAC
CCAATCCGGAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCT
GGCAAGACCACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGT
AACGCCCACGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCA
AACTGAATGTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGG
AAGAACTATTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTAC
AGATCGGACTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCA
TGGACAATCGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACAG
GATATGCCGGATGCCATGAGTGCCGCCGAGGTGGCCGAGAAGATGAGCTT
GGTGCAACTGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGG
ATGGCACTGGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAG
AAGTAAAAGCTTTCTAGACC

BS11223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6560-PA 540 CG6560-RA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-RA 836 CG6560-RA 214..753 17..556 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21885759..21886035 556..280 1385 100 Minus
3R 32079331 3R 21886093..21886225 280..148 665 100 Minus
3R 32079331 3R 21886286..21886417 150..19 660 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:33:49 has no hits.

BS11223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:22 Download gff for BS11223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6560-PA 1..540 17..556 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:42 Download gff for BS11223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6560-PA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:41:07 Download gff for BS11223.5prime
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..756 17..561 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:20 Download gff for BS11223.5prime
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..756 17..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:20 Download gff for BS11223.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21885756..21886034 281..561 98 <- Minus
3R 21886093..21886224 149..280 100 <- Minus
3R 21886288..21886417 19..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:41:07 Download gff for BS11223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17711478..17711756 281..561 98 <- Minus
arm_3R 17711815..17711946 149..280 100 <- Minus
arm_3R 17712010..17712139 19..148 100   Minus

BS11223.3prime Sequence

570 bp (569 high quality bases) assembled on 2006-04-18

> BS11223.3prime
ATGGTCTAGAAAGCTTTTACTTCTTCATATTCTTGCAGACCCAGTCCATT
CCCTCCTTTAGTCCAGTGCCATCCACAGCGGTACAGGCCTTGATCTCCCA
GGTTCGTCCCTGCAGTTGCACCAAGCTCATCTTCTCGGCCACCTCGGCGG
CACTCATGGCATCCGGCATATCCTGTTTGTTAGCGAAAATCAGCACGGGA
ACTTGCTTCAACCGATTGTCCATGAGCATTTCGAATAGTTCACTACCCGC
CTCGGGCAGGCGAGTCCGATCTGTACAGTCAATTACATAGATCAGCACAT
CAGTATTCGCAAAATAGTTCTTCCAATATGGACGTATCTTCCATTGACCA
CCAATATCCCATACATTCAGTTTGAAACCATCGGCTGCCACGGACTTGAT
GTTAAATCCTGCCGTGGGCGTTACCGTGGTTATGTCCTCCGATGCCAGCT
GCTTCAGTATCGTGGTCTTGCCAGCATTATCCAATCCTAGGAGCAGGATG
CGAGCCTCCTTTTCCGGATTGGGTCTCAGTTTACGCAACAGCGATAGCAG
ACCCATGTCGACTGATAACT

BS11223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6560-PA 540 CG6560-RA 1..540 556..17 2700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-RA 836 CG6560-RA 214..753 556..17 2700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21885759..21886035 17..293 1385 100 Plus
3R 32079331 3R 21886093..21886225 293..425 665 100 Plus
3R 32079331 3R 21886286..21886417 423..554 660 100 Plus
Blast to na_te.dros performed on 2015-02-03 17:57:25 has no hits.

BS11223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:21 Download gff for BS11223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6560-PA 1..540 17..556 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:41 Download gff for BS11223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6560-PA 1..540 17..556 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:39:07 Download gff for BS11223.3prime
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..756 12..556 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:05:45 Download gff for BS11223.3prime
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..756 12..556 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:05:45 Download gff for BS11223.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21885756..21886034 12..292 98 <- Plus
3R 21886093..21886224 293..424 100 <- Plus
3R 21886288..21886417 425..554 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:39:07 Download gff for BS11223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17711478..17711756 12..292 98 <- Plus
arm_3R 17711815..17711946 293..424 100 <- Plus
arm_3R 17712010..17712139 425..554 100   Plus

BS11223.complete Sequence

572 bp assembled on 2006-11-01

GenBank Submission: FJ636789

> BS11223.complete
GAAGTTATCAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGAC
CCAATCCGGAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCT
GGCAAGACCACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGT
AACGCCCACGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCA
AACTGAATGTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGG
AAGAACTATTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTAC
AGATCGGACTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCA
TGGACAATCGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACAG
GATATGCCGGATGCCATGAGTGCCGCCGAGGTGGCCGAGAAGATGAGCTT
GGTGCAACTGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGG
ATGGCACTGGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAG
AAGTAAAAGCTTTCTAGACCAT

BS11223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-RA 540 CG6560-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-RA 836 CG6560-RA 214..753 17..556 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21885759..21886035 556..280 1385 100 Minus
3R 32079331 3R 21886093..21886225 280..148 665 100 Minus
3R 32079331 3R 21886286..21886417 150..19 660 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:32:07 has no hits.

BS11223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:16 Download gff for BS11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG6560-RA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:38 Download gff for BS11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG6560-RA 210..752 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:47 Download gff for BS11223.complete
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..751 17..554 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:16 Download gff for BS11223.complete
Subject Subject Range Query Range Percent Splice Strand
CG6560-RA 210..752 17..561 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:50 Download gff for BS11223.complete
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..751 17..554 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:50 Download gff for BS11223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21886288..21886418 17..148 99   Minus
3R 21885761..21886034 281..554 100 <- Minus
3R 21886093..21886224 149..280 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:47 Download gff for BS11223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17711483..17711756 281..554 100 <- Minus
arm_3R 17711815..17711946 149..280 100 <- Minus
arm_3R 17712010..17712140 17..148 99   Minus

BS11223.pep Sequence

Translation from 16 to 555

> BS11223.pep
MGLLSLLRKLRPNPEKEARILLLGLDNAGKTTILKQLASEDITTVTPTAG
FNIKSVAADGFKLNVWDIGGQWKIRPYWKNYFANTDVLIYVIDCTDRTRL
PEAGSELFEMLMDNRLKQVPVLIFANKQDMPDAMSAAEVAEKMSLVQLQG
RTWEIKACTAVDGTGLKEGMDWVCKNMKK*

BS11223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-PA 179 CG6560-PA 1..179 1..179 932 100 Plus
Arf79F-PJ 182 CG8385-PJ 15..178 15..178 442 50.6 Plus
Arf79F-PI 182 CG8385-PI 15..178 15..178 442 50.6 Plus
Arf79F-PH 182 CG8385-PH 15..178 15..178 442 50.6 Plus
Arf79F-PF 182 CG8385-PF 15..178 15..178 442 50.6 Plus