Clone Sequence Records
BS11225.3prime Sequence
828 bp (818 high quality bases) assembled on 2006-04-18
> BS11225.3prime
ATGGTCTAGAAAGCTTTTACATGGCAGCCCCATTGTAATGCTGATACATC
TCATCCCAGAATCTCTGACGCTCCGGCTCGGGATTGGTTTTCATCGCCAG
ATTGGCTGAGATATCCATATAGTTGAGACTGTTCATCACATTGGTGGGAT
CGATTGGTGCCCACTTGGTGGTCAGCATAGGATCCTCGGAATCAGGCGTA
GGAGAGCCATATTTCGCGAAATTCGTCCACATGCGCACCATTCGATTCTT
GACCTGTACCTCCATCGACTTGGGATCCAAGCTCAAATTGAAGAAACCGA
ACTTGAACAGATAACCCAGCTCATCGCCATGGCAAACACCAGGTCGGGGA
ATACCCAGCATCCGTTTGTAGAGCCCCAAAGATCCGTCGAAGGAGAAGCG
GTACATGTAGACAGGTGCATTTCCAAACTTGGCATGATTTCGGGCTGTGC
GACGGATGCCCTGAAGGAACATGAGATCCGTGAGGAGCGCAATCATCTCG
TCCACTGATTCAATGCCCACATGCTTGCTTCCCAAGTAGAAGGATCTTAT
CTCGCGGGTCACCCTATCATGAGATTCAGTCACATTCAAATCTTGCGGAA
CCAGGCGGCCAAAATCGTTCTCAATGATGCTCAGCAACTGGGGATTCTTG
CGAAGTCTTCTTATGAACAGCATTGCCTCGTGTGTATTGTAACCCGTCAT
ATAGGCCACATCGCTGTTAAAATTCTGCGAATGATACATGTCGCTAGGGT
GCTGAGTAAGGAATGGCTCCTCGTAGAACTGTTCCTCCTGAGAGTCCTGA
TTCCAATATCCCTCCACCACGGGCACAA
BS11225.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-PB | 1575 | CG10175-RB | 764..1575 | 828..17 | 4035 | 99.8 | Minus |
| CG10175-PC | 1980 | CG10175-RC | 1169..1980 | 828..17 | 4035 | 99.8 | Minus |
| CG10175-PA | 1935 | CG10175-RA | 1124..1935 | 828..17 | 4035 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RD | 2726 | CG10175-RD | 1543..2356 | 828..15 | 4055 | 99.9 | Minus |
| CG10175-RE | 2809 | CG10175-RE | 1187..2000 | 828..15 | 4055 | 99.9 | Minus |
| CG10175-RA | 2370 | CG10175-RA | 1187..2000 | 828..15 | 4055 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23523322..23523603 | 207..488 | 1410 | 100 | Plus |
| 3R | 32079331 | 3R | 23523073..23523265 | 15..207 | 965 | 100 | Plus |
| 3R | 32079331 | 3R | 23523668..23523837 | 488..657 | 850 | 100 | Plus |
| 3R | 32079331 | 3R | 23523898..23524069 | 657..828 | 845 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:31:28 has no hits.
BS11225.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:26 Download gff for
BS11225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-PA | 1126..1935 | 17..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:47 Download gff for
BS11225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-PA | 1126..1935 | 17..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:15:13 Download gff for
BS11225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 1282..2093 | 15..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:00 Download gff for
BS11225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 1189..2000 | 15..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:00 Download gff for
BS11225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23523073..23523264 | 15..206 | 100 | <- | Plus |
| 3R | 23523322..23523602 | 207..487 | 100 | <- | Plus |
| 3R | 23523668..23523837 | 488..657 | 100 | <- | Plus |
| 3R | 23523899..23524067 | 658..826 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:15:13 Download gff for
BS11225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19348795..19348986 | 15..206 | 100 | <- | Plus |
| arm_3R | 19349044..19349324 | 207..487 | 100 | <- | Plus |
| arm_3R | 19349390..19349559 | 488..657 | 100 | <- | Plus |
| arm_3R | 19349621..19349789 | 658..826 | 99 | | Plus |
BS11225.5prime Sequence
900 bp (823 high quality bases) assembled on 2006-04-18
> BS11225.5prime
GAAGTTATCAGTCGACATGCGATATGGAGCTCCGCCTACAGGAGCAAGAA
GATTCCGTGCTGCGGAGCCGGAGAAGCCGTGGTCTGGAATCCGTGATGCT
TCTCGGGAAGGTCAGAGCTGTCCGCATAAGAACATGATCCTGGACACTTT
CAAGGGAGACGAGGATTGCCTGTTCGTCAATGTGTTCACAACCCAAATGC
CCAAGGATGATGAGTCTGCAGAGCAGCCAAAGCTTCCTGTTATGGTTTGG
CTGCATGGAGGAGGTTTCTCCTTTGGCTCCGGCAACTCTTTCCTCTACGG
ACCGGACTATCTAGTGGCTGAGGATATTGTCTTGGTCACACTGAACTACC
GACTAGGTCCACTGGGTTTTCTTACCGCAGGACCTGACGCTCCAGGTAAC
CAGGGTCTCAAGGATCAGGTACTGGCACTAAAGTGGGTGCGGGATAACAT
AGCCGCATTTGGTGGAGATCCCAATCAGGTTACCATTTTCGGAGAGTCAG
CTGGAGCTTCGTCCGTCCAGTTGCTCCTCCTGTCCTCCCAGGCCAAGGGA
CTTTTCCACCGAGCGATTTCCCAAAGTGGATCGGCCCTAAATCCATGGTC
CATGTCCGCCAGTTCGAGCCAGAGAGCTGCTCGGCTGGCAGCCAACTTGG
GTTACGTGGGGGCCAATAAAACAGAGGATATCCTCGACTTTCTTAGAAGG
GTTCCAGCCATGAAATTGGTTGAAGCCGCGCCCACAACAATCACGGCGGA
GGATCAGCGGAATAACATTGGTTTGCCATTTGTGCCCGTGGTGGAGGGAT
ATTGGAATCAGGACTCTCAGGAGGAACAGTTCTACGAGGAGCCATCCCTT
ACTCAGCACCCTAGCGACATGTATCATTCGCAGAATTTTAACAGCGATGT
BS11225.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-PB | 1575 | CG10175-RB | 1..884 | 17..900 | 4395 | 99.8 | Plus |
| CG10175-PC | 1980 | CG10175-RC | 406..1289 | 17..900 | 4395 | 99.8 | Plus |
| CG10175-PA | 1935 | CG10175-RA | 361..1244 | 17..900 | 4395 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RD | 2726 | CG10175-RD | 780..1663 | 17..900 | 4405 | 99.9 | Plus |
| CG10175-RE | 2809 | CG10175-RE | 424..1307 | 17..900 | 4405 | 99.9 | Plus |
| CG10175-RA | 2370 | CG10175-RA | 424..1307 | 17..900 | 4405 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23523949..23524800 | 900..49 | 4245 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:54:17 has no hits.
BS11225.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:27 Download gff for
BS11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-PA | 349..1244 | 3..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:49 Download gff for
BS11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-PA | 349..1244 | 3..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:56 Download gff for
BS11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 505..1400 | 3..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:29:57 Download gff for
BS11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 412..1307 | 3..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:29:57 Download gff for
BS11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23523949..23524797 | 52..900 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:56 Download gff for
BS11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19349671..19350519 | 52..900 | 99 | <- | Minus |
BS11225.complete Sequence
1607 bp assembled on 2006-11-01
GenBank Submission: FJ636790
> BS11225.complete
GAAGTTATCAGTCGACATGCGATATGGAGCTCCGCCTACAGGAGCAAGAA
GATTCCGTGCTGCGGAGCCGGAGAAGCCGTGGTCTGGAATCCGTGATGCT
TCTCGGGAAGGTCAGAGCTGTCCGCATAAGAACATGATCCTGGACACTTT
CAAGGGAGACGAGGATTGCCTGTTCGTCAATGTGTTCACAACCCAAATGC
CCAAGGATGATGAGTCTGCAGAGCAGCCAAAGCTTCCTGTTATGGTTTGG
CTGCATGGAGGAGGTTTCTCCTTTGGCTCCGGCAACTCTTTCCTCTACGG
ACCGGACTATCTAGTGGCTGAGGATATTGTCTTGGTCACACTGAACTACC
GACTAGGTCCACTGGGTTTTCTTACCGCAGGACCTGACGCTCCAGGTAAC
CAGGGTCTCAAGGATCAGGTACTGGCACTAAAGTGGGTGCGGGATAACAT
AGCCGCATTTGGTGGAGATCCCAATCAGGTTACCATTTTCGGAGAGTCAG
CTGGAGCTTCGTCCGTCCAGTTGCTCCTCCTGTCCTCCCAGGCCAAGGGA
CTTTTCCACCGAGCGATTTCCCAAAGTGGATCGGCCCTAAATCCATGGTC
CATGTCCGCCAGTTCGAGCCAGAGAGCTGCTCGGCTGGCAGCCAACTTGG
GTTACGTGGGGGCCAATAAAACAGAGGATATCCTCGACTTTCTTAGAAGG
GTTCCAGCCATGAAATTGGTTGAAGCCGCGCCCACAACAATCACGGCGGA
GGATCAGCGGAATAACATTGGTTTGCCATTTGTGCCCGTGGTGGAGGGAT
ATTGGAATCAGGACTCTCAGGAGGAACAGTTCTACGAGGAGCCATTCCTT
ACTCAGCACCCTAGCGACATGTATCATTCGCAGAATTTTAACAGCGATGT
GGCCTATATGACGGGTTACAATACACACGAGGCAATGCTGTTCATAAGAA
GACTTCGCAAGAATCCCCAGTTGCTGAGCATCATTGAGAACGATTTTGGC
CGCCTGGTTCCGCAAGATTTGAATGTGACTGAATCTCATGATAGGGTGAC
CCGCGAGATAAGATCCTTCTACTTGGGAAGCAAGCATGTGGGCATTGAAT
CAGTGGACGAGATGATTGCGCTCCTCACGGATCTCATGTTCCTTCAGGGC
ATCCGTCGCACAGCCCGAAATCATGCCAAGTTTGGAAATGCACCTGTCTA
CATGTACCGCTTCTCCTTCGACGGATCTTTGGGGCTCTACAAACGGATGC
TGGGTATTCCCCGACCTGGTGTTTGCCATGGCGATGAGCTGGGTTATCTG
TTCAAGTTCGGTTTCTTCAATTTGAGCTTGGATCCCAAGTCGATGGAGGT
ACAGGTCAAGAATCGAATGGTGCGCATGTGGACGAATTTCGCGAAATATG
GCTCTCCTACGCCTGATTCCGAGGATCCTATGCTGACCACCAAGTGGGCA
CCAATCGATCCCACCAATGTGATGAACAGTCTCAACTATATGGATATCTC
AGCCAATCTGGCGATGAAAACCAATCCCGAGCCGGAGCGTCAGAGATTCT
GGGATGAGATGTATCAGCATTACAATGGGGCTGCCATGTAAAAGCTTTCT
AGACCAT
BS11225.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RD | 2124 | CG10175-PD | 550..2124 | 17..1591 | 7860 | 99.9 | Plus |
| CG10175-RE | 1935 | CG10175-PE | 361..1935 | 17..1591 | 7860 | 99.9 | Plus |
| CG10175-RA | 1935 | CG10175-PA | 361..1935 | 17..1591 | 7860 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RD | 2726 | CG10175-RD | 780..2356 | 17..1593 | 7870 | 99.9 | Plus |
| CG10175-RE | 2809 | CG10175-RE | 424..2000 | 17..1593 | 7870 | 99.9 | Plus |
| CG10175-RA | 2370 | CG10175-RA | 424..2000 | 17..1593 | 7870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23523898..23524800 | 951..49 | 4500 | 99.9 | Minus |
| 3R | 32079331 | 3R | 23523322..23523603 | 1401..1120 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 23523073..23523265 | 1593..1401 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 23523668..23523837 | 1120..951 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:35:58 has no hits.
BS11225.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:19 Download gff for
BS11225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 349..1935 | 3..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:42 Download gff for
BS11225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 408..1996 | 3..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:53 Download gff for
BS11225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 517..2089 | 17..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:19 Download gff for
BS11225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 408..1996 | 3..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:19 Download gff for
BS11225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 424..1996 | 17..1589 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:19 Download gff for
BS11225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23523322..23523602 | 1121..1401 | 100 | <- | Minus |
| 3R | 23523668..23523837 | 951..1120 | 100 | <- | Minus |
| 3R | 23523077..23523264 | 1402..1589 | 100 | <- | Minus |
| 3R | 23523899..23524797 | 52..950 | 99 | <- | Minus |
| 3R | 23524853..23524887 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:53 Download gff for
BS11225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19348799..19348986 | 1402..1589 | 100 | <- | Minus |
| arm_3R | 19349044..19349324 | 1121..1401 | 100 | <- | Minus |
| arm_3R | 19349390..19349559 | 951..1120 | 100 | <- | Minus |
| arm_3R | 19349621..19350519 | 52..950 | 99 | <- | Minus |
| arm_3R | 19350575..19350609 | 17..51 | 100 | | Minus |
BS11225.pep Sequence
Translation from 16 to 1590
> BS11225.pep
MRYGAPPTGARRFRAAEPEKPWSGIRDASREGQSCPHKNMILDTFKGDED
CLFVNVFTTQMPKDDESAEQPKLPVMVWLHGGGFSFGSGNSFLYGPDYLV
AEDIVLVTLNYRLGPLGFLTAGPDAPGNQGLKDQVLALKWVRDNIAAFGG
DPNQVTIFGESAGASSVQLLLLSSQAKGLFHRAISQSGSALNPWSMSASS
SQRAARLAANLGYVGANKTEDILDFLRRVPAMKLVEAAPTTITAEDQRNN
IGLPFVPVVEGYWNQDSQEEQFYEEPFLTQHPSDMYHSQNFNSDVAYMTG
YNTHEAMLFIRRLRKNPQLLSIIENDFGRLVPQDLNVTESHDRVTREIRS
FYLGSKHVGIESVDEMIALLTDLMFLQGIRRTARNHAKFGNAPVYMYRFS
FDGSLGLYKRMLGIPRPGVCHGDELGYLFKFGFFNLSLDPKSMEVQVKNR
MVRMWTNFAKYGSPTPDSEDPMLTTKWAPIDPTNVMNSLNYMDISANLAM
KTNPEPERQRFWDEMYQHYNGAAM*
BS11225.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-PD | 707 | CG10175-PD | 184..707 | 1..524 | 2776 | 100 | Plus |
| CG10175-PE | 644 | CG10175-PE | 121..644 | 1..524 | 2776 | 100 | Plus |
| CG10175-PA | 644 | CG10175-PA | 121..644 | 1..524 | 2776 | 100 | Plus |
| CG10175-PC | 659 | CG10175-PC | 136..659 | 1..524 | 2776 | 100 | Plus |
| CG10175-PB | 524 | CG10175-PB | 1..524 | 1..524 | 2776 | 100 | Plus |
