Clone Sequence Records
BS11226.3prime Sequence
743 bp (737 high quality bases) assembled on 2006-04-18
> BS11226.3prime
ATGGTCTAGAAAGCTTTTAGATGTTGCGGAAGTGCCGGATGGCCAGGTCC
ACCGGCAGGTCGAAGTCAAATCGAGAAAGAGCATCGATGGAGCTCAGTGA
GTCGCGGAATCCGGTGCGGGCCACGTAGCTGTCTGCTGAGTAGTACGTGT
CCACCAGTTCATGGCAGCTGAGGATCAGGTTCAGCCACTCCACCAGCAAA
TGGGAATTGAGTCCGGCGCAGACGAAGGCTTTAAAGTGCGCGTTGTTACT
CCGTTTGTATGGACGATGCATTGCCAGAATCATGCCCACGGCGCTGAGCA
AACTTTGCTTGGCGGTCACAGCCTGCGCGTCCACGATGTCCAGCTGGAAG
CTCTGCGACAACTTTCTGGCAGGCGTGTTGTTGTACTCCTCGCCGTGTTT
CAACCTATAATAGGCTAGTACTAGTTCCCAGGCGTGCATGGCCCTGCCCA
AGCCGAGGAACTGCGAGTCTCCTCCGACGGCGGGCGGCACTACCGGAGGC
CCAGGGTGCAGGCACCTCATGAAGGGAACCATCAAACTGGAGGCAGCCGA
TTCCGCTGGTATGCGAAGTCCGTGTTGTATAAGCTGCTGCAATGTGCGGG
CAAAGTTCTTCCGCACAACCGTAGTCAATTCCCTGCCAATAGTGGCAATG
GAATCACCGCGTGCATGCGTCGTCCGCCGGCTCTTGCTCTCCTTTTCCCA
CTCGAAGTTGGAGTAGCTAATGTCTTCGTCGGAGTCGGAGGAT
BS11226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-PA | 2136 | CG3703-RA | 1410..2136 | 743..17 | 3610 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 02:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-RA | 2496 | CG3703-RA | 1637..2363 | 743..17 | 3620 | 99.9 | Minus |
| mus81-RA | 2155 | CG3026-RA | 1533..1722 | 17..206 | 935 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 02:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 943302..943838 | 207..743 | 2685 | 100 | Plus |
| X | 23542271 | X | 942607..942796 | 17..206 | 935 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-07 02:00:39 has no hits.
BS11226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:28 Download gff for
BS11226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-PA | 1410..2136 | 17..743 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:50 Download gff for
BS11226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-PA | 1410..2136 | 17..743 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:23:44 Download gff for
BS11226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 1637..2367 | 13..743 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:02:12 Download gff for
BS11226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 1637..2367 | 13..743 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:02:12 Download gff for
BS11226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 942603..942796 | 13..206 | 98 | <- | Plus |
| X | 943302..943838 | 207..743 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:23:44 Download gff for
BS11226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 836636..836829 | 13..206 | 98 | <- | Plus |
| arm_X | 837335..837871 | 207..743 | 100 | | Plus |
BS11226.5prime Sequence
843 bp (785 high quality bases) assembled on 2006-04-18
> BS11226.5prime
GAAGTTATCAGTCGACATGGAAATGAAAATGGCAGAGGCCCAGGAAACCA
AGGACTCTTGCTCGACGATCGAAGGCCAGCTGCCAGCTGGACCTGTTCGT
GCTGAAGATGAGGAGGAAGAAGTGGAGGTCGAACAAGAGCAGCAGGAGCT
GCTAAGCGAACGGTGGTCGCCGTTGGGAGCCAACTACGATGACGCGAATA
GCGCCAGTTCTGGCGTGGATTGCGAACTAGAACCAGGACTGGAAAAGTCA
GAAGCGCGACGTGGAAGCACTGGCAGCGAACTGGCCCGTCTGCGAAGCAT
AGAGGAGGAGCAGGAGCTTCTGACAAGTTCTCTGCTGGCTTTGACCTCCC
ACTTTGCTCACGTCCAGCTTAGAGTCCGCCAAATCGTGGAGGCGCCAGCG
GAGGAGCGGGATCAACTTTTACGCGACCTCGAGGACTTCGCCTTCCAAGG
AATTCCAGACGCAGTCCAGTCCAAGGAATCCCATCCAGATAAGCCCGCAA
GCGATGGTGAAAAGGACCATGGTCCTGATAGCCAGCTCATCCAACAACTG
AAGTCCCAGCTGACTGAGCTGGAACAAATAGCCTACGAGGCTGGCGAACC
TGGCATCCTGCCGCAGCACGTATTGCTCGAGAAGCAAAAGTTTATCCTGG
ACGAGCTGCGCGCCAAGCTCAATCTCCAGGTAGAGCAGCACGAACTGCCG
GCCCTTAGCACGGAACAACTGCGCCACCAGGTCGACAATGCCATCGGCGA
GTTTGTGGGCCCTCTGAAGATGAAGGAGCAACTGGTGGCCCAACTGAAGA
CGCAGATAACTGACTTGGAGCGCTTCATTGCCTTCCTTCAGTG
BS11226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-PA | 2136 | CG3703-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-RA | 2496 | CG3703-RA | 228..1054 | 17..843 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 944720..945546 | 843..17 | 4135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:54:00 has no hits.
BS11226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:29 Download gff for
BS11226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:52 Download gff for
BS11226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:48 Download gff for
BS11226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 223..1054 | 12..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:29:02 Download gff for
BS11226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 223..1054 | 12..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:29:02 Download gff for
BS11226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 944720..945551 | 12..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:48 Download gff for
BS11226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 838753..839584 | 12..843 | 99 | | Minus |
BS11226.complete Sequence
2168 bp assembled on 2009-12-07
GenBank Submission: KX805258
> BS11226.complete
GAAGTTATCAGTCGACATGGAAATGAAAATGGCAGAGGCCCAGGAAACCA
AGGACTCTTGCTCGACGATCGAAGGCCAGCTGCCAGCTGGACCTGTTCGT
GCTGAAGATGAGGAGGAAGAAGTGGAGGTCGAACAAGAGCAGCAGGAGCT
GCTAAGCGAACGGTGGTCGCCGTTGGGAGCCAACTACGATGACGCGAATA
GCGCCAGTTCTGGCGTGGATTGCGAACTAGAACCAGGACTGGAAAAGTCA
GAAGCGCGACGTGGAAGCACTGGCAGCGAACTGGCCCGTCTGCGAAGCAT
AGAGGAGGAGCAGGAGCTTCTGACAAGTTCTCTGCTGGCTTTGACCTCCC
ACTTTGCTCACGTCCAGCTTAGAGTCCGCCAAATCGTGGAGGCGCCAGCG
GAGGAGCGGGATCAACTTTTACGCGACCTCGAGGACTTCGCCTTCCAAGG
AATTCCAGACGCAGTCCAGTCCAAGGAATCCCATCCAGATAAGCCCGCAA
GCGATGGTGAAAAGGACCATGGTCCTGATAGCCAGCTCATCCAACAACTG
AAGTCCCAGCTGACTGAGCTGGAACAAATAGCCTACGAGGCTGGCGAACC
TGGCATCCTGCCGCAGCACGTATTGCTCGAGAAGCAAAAGTTTATCCTGG
ACGAGCTGCGCGCCAAGCTCAATCTCCAGGTAGAGCAGCACGAACTGCCG
GCCCTTAGCACGGAACAACTGCGCCACCAGGTCGACAATGCCATCGGCGA
GTTTGTGGGCCCTCTGAAGATGAAGGAGCAACTGGTGGCCCAACTGAAGA
CGCAGATAACTGACTTGGAGCGCTTCATTGCCTTCCTTCAGTGCGATGCC
ATTGAGGGATCCGTTGGGGATCGACTGAAGCTTCTATCCGGTGCGTACAA
CAGCTACGCTGCAAAGCAGACAGCACGGAGTTCACAGGCAAGTTACGTTG
CCACAAACGCTCCAGCTACGACAGCTACTACCCCGCCATCCTCGGGATTG
GGTGCCCATTCTTCCGGCGAGAGCTTGCACAGCAAGGCACATGGCTTGCT
GGACAAGGCTTCGGTCCTCATGCAAATGTTCGCCAGCACGCATCTGGTGA
AACCACGAACTCACGACGAATTCCAGCAAAATTCGCTGAAGAAGACGCAC
AAGGGCAACCACTGGGGGGATCTACGTGCCCAGCTTGAGGTGGACATCCA
GGAAGTAGCTGCACTGGCCGCCACTTTGAGCTGCGACCGCGAGAAGTTGG
CCAACATCAAGAGAGCTTTGCGCAAACAGCAACAACAGGCGGAGTCAACC
GAATTCTCCGACACTGGCAATCCGGTTATTAACTCACAAAACGGAGCACT
GACCCTGCCGCCTCGTTGCCGGCGAGCAGTGCCAACTGGTCACGAACTGG
CTCCATATGCGTCCGGGGGCGCCATATCCTCCGACTCCGACGAAGACATT
AGCTACTCCAACTTCGAGTGGGAAAAGGAGAGCAAGAGCCGGCGGACGAC
GCATGCACGCGGTGATTCCATTGCCACTATTGGCAGGGAATTGACTACGG
TTGTGCGGAAGAACTTTGCCCGCACATTGCAGCAGCTTATACAACACGGA
CTTCGCATACCAGCGGAATCGGCTGCCTCCAGTTTGATGGTTCCCTTCAT
GAGGTGCCTGCACCCTGGGCCTCCGGTAGTGCCGCCCGCCGTCGGAGGAG
ACTCGCAGTTCCTCGGCTTGGGCAGGGCCATGCACGCCTGGGAACTAGTA
CTAGCCTATTATAGGTTGAAACACGGCGAGGAGTACAACAACACGCCTGC
CAGAAAGTTGTCGCAGAGCTTCCAGCTGGACATCGTGGACGCGCAGGCTG
TGACCGCCAAGCAAAGTTTGCTCAGCGCCGTGGGCATGATTCTGGCAATG
CATCGTCCATACAAACGGAGTAACAACGCGCACTTTAAAGCCTTCGTCTG
CGCCGGACTCAATTCCCATTTGCTGGTGGAGTGGCTGAACCTGATCCTCA
GCTGCCATGAACTGGTGGACACGTACTACTCAGCAGACAGCTACGTGGCC
CGCACCGGATTCCGCGACTCACTGCGCTCCATCGATGCTCTTTCTCGATT
TGACTTCGACCTGCCGGTGGACCTGGCCATCCGGCACTTCCGCAACATCT
AAAAGCTTTCTAGACCAT
BS11226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-RA | 2136 | CG3703-PA | 1..2136 | 17..2152 | 10680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-RA | 2496 | CG3703-RA | 228..2363 | 17..2152 | 10680 | 100 | Plus |
| mus81-RA | 2155 | CG3026-RA | 1533..1722 | 2152..1963 | 950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 944395..945546 | 1168..17 | 5760 | 100 | Minus |
| X | 23542271 | X | 943302..944097 | 1962..1167 | 3980 | 100 | Minus |
| X | 23542271 | X | 942607..942796 | 2152..1963 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:12:14 has no hits.
BS11226.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:52 Download gff for
BS11226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 227..2360 | 17..2150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:34 Download gff for
BS11226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 228..2361 | 17..2150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:20 Download gff for
BS11226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 227..2360 | 17..2150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:14 Download gff for
BS11226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 228..2361 | 17..2150 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:14 Download gff for
BS11226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 942609..942796 | 1963..2150 | 100 | <- | Minus |
| X | 943302..944096 | 1168..1962 | 100 | <- | Minus |
| X | 944396..945546 | 17..1167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:34 Download gff for
BS11226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 836642..836829 | 1963..2150 | 100 | <- | Minus |
| arm_X | 837335..838129 | 1168..1962 | 100 | <- | Minus |
| arm_X | 838429..839579 | 17..1167 | 100 | | Minus |
BS11226.pep Sequence
Translation from 16 to 2151
> BS11226.pep
MEMKMAEAQETKDSCSTIEGQLPAGPVRAEDEEEEVEVEQEQQELLSERW
SPLGANYDDANSASSGVDCELEPGLEKSEARRGSTGSELARLRSIEEEQE
LLTSSLLALTSHFAHVQLRVRQIVEAPAEERDQLLRDLEDFAFQGIPDAV
QSKESHPDKPASDGEKDHGPDSQLIQQLKSQLTELEQIAYEAGEPGILPQ
HVLLEKQKFILDELRAKLNLQVEQHELPALSTEQLRHQVDNAIGEFVGPL
KMKEQLVAQLKTQITDLERFIAFLQCDAIEGSVGDRLKLLSGAYNSYAAK
QTARSSQASYVATNAPATTATTPPSSGLGAHSSGESLHSKAHGLLDKASV
LMQMFASTHLVKPRTHDEFQQNSLKKTHKGNHWGDLRAQLEVDIQEVAAL
AATLSCDREKLANIKRALRKQQQQAESTEFSDTGNPVINSQNGALTLPPR
CRRAVPTGHELAPYASGGAISSDSDEDISYSNFEWEKESKSRRTTHARGD
SIATIGRELTTVVRKNFARTLQQLIQHGLRIPAESAASSLMVPFMRCLHP
GPPVVPPAVGGDSQFLGLGRAMHAWELVLAYYRLKHGEEYNNTPARKLSQ
SFQLDIVDAQAVTAKQSLLSAVGMILAMHRPYKRSNNAHFKAFVCAGLNS
HLLVEWLNLILSCHELVDTYYSADSYVARTGFRDSLRSIDALSRFDFDLP
VDLAIRHFRNI*
BS11226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-PA | 711 | CG3703-PA | 1..711 | 1..711 | 3622 | 100 | Plus |
