Clone BS11229 Report

Search the DGRC for BS11229

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG9717-RA
Protein status:BS11229.pep: full length peptide match
Sequenced Size:1949

Clone Sequence Records

BS11229.3prime Sequence

860 bp (789 high quality bases) assembled on 2006-04-18

> BS11229.3prime
ATGGTCTAGAAAGCTTTCAGATCGGGGGCGACTTCTCCGCCAGCTTGGCG
TGCAGGGTGTTAATATCGTATATGACCACCAGATCCTTGTTCAGACCCTC
GAAGACCTGCGCCACTCGCGGCTGCAGGTTGTAGAAGAACAGCGGCTGCT
CCCGCAGCTTAAAGTCCATCACCATGGTGGATATCACCTTGGCGGCCGTG
AAGTCCGCTCCATAGATGTGGGTGCAATCGATGACCACCGGCAGTGTGGA
CTTCTGACCCTGCTTGTTGATCACCTTGCGCACAAACTCCATCGAGGGGA
AGATCAGACAGCGATCGGGAGTTAGCATTAGGTATTTCAGACCAGTAGTT
GTCGCCAGCGTTTCGATGCGCAACTTTGGCCGGGCTGCCTGGTAGAGGAT
GAAGACCACATTGATGCCGATGCCCACGAGGATGCCCAGTTGCAGGGGCA
GAACCAGACAGGCGAAAAAGGCACCCAGGCCGGGAATGAGATCGGTTTTT
TTACTGTGCCACATGGGCTTGATCACTCGGTACTGGACCATGAAAATAAC
CGCCGCAATAATAATGGAGGCCAGAGCCGCCTTAGGAATGTAGTAAAAGC
AGGGCGTGAGGTACAACAGGGCAATAATCACTATCACGCTGGTGTAGAGA
TTGGACAGCTGGGTCCTCACTCCACTGGCATTTAAGATGGCTCCCCTGGC
GATGCCGCCATTGCTCCGAAGACCCTGGACAAAGGAGTTGGCCACGTTGC
ACACTCCAGAGGCTATCAGCTCCTGCGTGGCATCTGTGGGTTTGCCATCA
GCGAAAGCCTGAACCACGGCCATAGTTTCCAGAAGAGCAATCAATGGAAC
CACAATGAGC

BS11229.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-PA 1917 CG9717-RA 1074..1917 860..17 4195 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-RA 2679 CG9717-RA 1308..2151 860..17 4205 99.9 Minus
CG9702-RB 2111 CG9702-RB 1390..1810 590..170 295 72.2 Minus
CG9702-RA 2318 CG9702-RA 1597..2017 590..170 295 72.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 18:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30584548..30584884 17..353 1685 100 Plus
3R 32079331 3R 30585289..30585596 499..806 1525 99.7 Plus
3R 32079331 3R 30585075..30585220 353..498 730 100 Plus
3R 32079331 3R 30585933..30585995 798..860 285 96.8 Plus
3R 32079331 3R 30581676..30581816 310..170 240 78 Minus
Blast to na_te.dros performed on 2015-02-03 18:07:29 has no hits.

BS11229.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:34 Download gff for BS11229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-PA 1074..1917 17..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:57 Download gff for BS11229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-PA 1074..1917 17..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:40:31 Download gff for BS11229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 1308..2151 17..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:06:57 Download gff for BS11229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 1308..2151 17..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:06:57 Download gff for BS11229.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30584548..30584883 17..352 100 <- Plus
3R 30585075..30585220 353..498 100 <- Plus
3R 30585289..30585591 499..801 100 <- Plus
3R 30585937..30585995 802..860 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:40:31 Download gff for BS11229.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26410270..26410605 17..352 100 <- Plus
arm_3R 26410797..26410942 353..498 100 <- Plus
arm_3R 26411011..26411313 499..801 100 <- Plus
arm_3R 26411659..26411717 802..860 98   Plus

BS11229.5prime Sequence

874 bp (798 high quality bases) assembled on 2006-04-18

> BS11229.5prime
GAAGTTATCAGTCGACATGAGCCAAAGAGCTGACAGCGGTCACACGAATA
GTGGCTTCAATGGTGGATCCGAGGTGTCCTTGGACATACCCACCAACACG
CTGTACCACACCTCGCGCGACTGCATTGTGCAGGAGGAGCAGGGTCCCGA
TGAGAGCTGCCTGGAGGGAACTCAAAGCTGTTGCTCAAACCTCTGGTCCA
ACATCTTCAGGAAGAAAACGCTGTACAAGCGATTCCCCATCCTGGTGTGG
CTGCCCCAGTACAAAAAGGATTATATTTTCGGTGACATAGTGGCGGGCAT
TTCGGTGGCCCTGACGGTGATACCCCAGGCCCTGGCCTATGCCGGAATAG
CAGGACTGGATCTGCAGTACGGCCTGTACGCCTGCTTCCTGGGCTGCTTC
ATATACATATTTATTGGGTCCAGTAAGGATGTGCCTATTGGACCTACGGC
CATATCAGCACTGCTGTCCTTTCAAATCGCTGGAGGCAGTTGGCAGATAG
CCACCTTGCTAACCTTCCTCACAGGTCTCATTGAGATCCTGATGGGAGTT
TTCCGGCTGGGATTTCTCATCGATTTCGTTTCTGGTCCCGTGGGAGCGGG
ATTCACGAGTGCCGTGTCCTTGATCATCTTCAGCTCCCAGATGAAGGACT
TCTTGGGCATCAAAACAAGTGGCAACACCTTCCTGCAAGTGTGGATTAGC
ATTGTGAACGATATACACAACATCAGCTGGCCGGACTTCATCTTGGGAAT
CGTCTGCATTACTCTGCTCCTGAGCCTGAGAGCCCTGGCCAGTTGTACCC
TGGGTCCCAAGGAGGGAAAACCACAGCGCAAAAGCTTCTGACCGGCATTT
TCTGGACCATCGGAACTGCCCGCA

BS11229.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-PA 1917 CG9717-RA 1..804 17..820 4020 100 Plus
CG9717-PA 1917 CG9717-RA 802..859 817..874 290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-RA 2679 CG9717-RA 235..1093 17..874 4270 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30586210..30587068 874..17 4245 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 07:13:17 has no hits.

BS11229.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:35 Download gff for BS11229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-PA 1..858 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:59 Download gff for BS11229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-PA 1..858 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:29:56 Download gff for BS11229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 235..1092 17..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:47:53 Download gff for BS11229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 235..1092 17..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:47:53 Download gff for BS11229.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30586211..30587068 17..873 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:29:56 Download gff for BS11229.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26411933..26412790 17..873 99   Minus

BS11229.complete Sequence

1949 bp assembled on 2008-08-15

GenBank Submission: KX803810

> BS11229.complete
GAAGTTATCAGTCGACATGAGCCAAAGAGCTGACAGCGGTCACACGAATA
GTGGCTTCAATGGTGGATCCGAGGTGTCCTTGGACATACCCACCAACACG
CTGTACCACACCTCGCGCGACTGCATTGTGCAGGAGGAGCAGGGTCCCGA
TGAGAGCTGCCTGGAGGGAACTCAAAGCTGTTGCTCAAACCTCTGGTCCA
ACATCTTCAGGAAGAAAACGCTGTACAAGCGATTCCCCATCCTGGTGTGG
CTGCCCCAGTACAAAAAGGATTATATTTTCGGTGACATAGTGGCGGGCAT
TTCGGTGGCCCTGACGGTGATACCCCAGGCCCTGGCCTATGCCGGAATAG
CAGGACTGGATCTGCAGTACGGCCTGTACGCCTGCTTCCTGGGCTGCTTC
ATATACATATTTATTGGGTCCAGTAAGGATGTGCCTATTGGACCTACGGC
CATATCAGCACTGCTGTCCTTTCAAATCGCTGGAGGCAGTTGGCAGATAG
CCACCTTGCTAACCTTCCTCACAGGTCTCATTGAGATCCTGATGGGAGTT
TTCCGGCTGGGATTTCTCATCGATTTCGTTTCTGGTCCCGTGGGAGCGGG
ATTCACGAGTGCCGTGTCCTTGATCATCTTCAGCTCCCAGATGAAGGACT
TCTTGGGCATCAAAACAAGTGGCAACACCTTCCTGCAAGTGTGGATTAGC
ATTGTGAACGATATACACAACATCAGCTGGCCGGACTTCATCTTGGGAAT
CGTCTGCATTACTCTGCTCCTGAGCCTGAGAGCCCTGGCCAGTTGTACCC
TGGGTCCCAAGGAGGGAAAAACCACAGCGCAAAAGCTTCTGACCGGCATT
TTCTGGACCATCGGAACTGCCCGCAATGCCCTGCTGGTCTGTGGAACTGC
TGGCCTGGGTTACTGGTTGTTTGTCAACGGCAAGGAGAATCTCGTGAAGA
CAGTTGGCTTTGTGCCCAAGGGATTGCCCTCCTTTCAGCCACCACCCTTC
CACATGGATGCCGTTGTCAACGAAACCACAGGAGAAGTCCTTCAGGAGGC
CCAGAGCTTCTGGGACATGGTCAGCACCCTGGGATCTGGGCTCATTGTGG
TTCCATTGATTGCTCTTCTGGAAACTATGGCCGTTGTTCAGGCTTTCGCT
GATGGCAAACCCACAGATGCCACGCAGGAGCTGATAGCCTCTGGAGTGTG
CAACGTGGCCAACTCCTTTGTCCAGGGTCTTCGGAGCAATGGCGGCATCG
CCAGGGGAGCCATCTTAAATGCCAGTGGAGTGAGGACCCAGCTGTCCAAT
CTCTACACCAGCGTGATAGTGATTATTGCCCTGTTGTACCTCACGCCCTG
CTTTTACTACATTCCTAAGGCGGCTCTGGCCTCCATTATTATTGCGGCGG
TTATTTTCATGGTCCAGTACCGAGTGATCAAGCCCATGTGGCACAGTAAA
AAAACCGATCTCATTCCCGGCCTGGGTGCCTTTTTCGCCTGTCTGGTTCT
GCCCCTGCAACTGGGCATCCTCGTGGGCATCGGCATCAATGTGGTCTTCA
TCCTCTACCAGGCAGCCCGGCCAAAGTTGCGCATCGAAACGCTGGCGACA
ACTACTGGTCTGAAATACCTAATGCTAACTCCCGATCGCTGTCTGATCTT
CCCCTCGATGGAGTTTGTGCGCAAGGTGATCAACAAGCAGGGTCAGAAGT
CCACACTGCCGGTGGTCATCGATTGCACCCACATCTATGGAGCGGACTTC
ACGGCCGCCAAGGTGATATCCACCATGGTGATGGACTTTAAGCTGCGGGA
GCAGCCGCTGTTCTTCTACAACCTGCAGCCGCGAGTGGCGCAGGTCTTCG
AGGGTCTGAACAAGGATCTGGTGGTCATATACGATATTAACACCCTGCAC
GCCAAGCTGGCGGAGAAGTCGCCCCCGATCTGAAAGCTTTCTAGACCAT

BS11229.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-RA 1917 CG9717-PA 1..1917 17..1933 9585 100 Plus
CG9702-RB 2031 CG9702-PB 1365..1785 1360..1780 245 70.5 Plus
CG9702-RA 2031 CG9702-PA 1365..1785 1360..1780 245 70.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-RA 2679 CG9717-RA 235..2151 17..1933 9585 100 Plus
CG9702-RB 2111 CG9702-RB 1390..1810 1360..1780 245 70.5 Plus
CG9702-RA 2318 CG9702-RA 1597..2017 1360..1780 245 70.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30585933..30587068 1152..17 5665 99.9 Minus
3R 32079331 3R 30584548..30584884 1933..1597 1685 100 Minus
3R 32079331 3R 30585289..30585596 1451..1144 1525 99.7 Minus
3R 32079331 3R 30585075..30585220 1597..1452 730 100 Minus
3R 32079331 3R 30581676..30581816 1640..1780 240 78 Plus
Blast to na_te.dros performed on 2014-11-28 00:25:00 has no hits.

BS11229.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:19:28 Download gff for BS11229.complete
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 232..2148 17..1933 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:08 Download gff for BS11229.complete
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 235..2150 17..1932 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:19 Download gff for BS11229.complete
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 232..2147 17..1932 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:28 Download gff for BS11229.complete
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 235..2150 17..1932 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:28 Download gff for BS11229.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30584549..30584883 1598..1932 100 <- Minus
3R 30585075..30585220 1452..1597 100 <- Minus
3R 30585289..30585591 1149..1451 100 <- Minus
3R 30585937..30587068 17..1148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:08 Download gff for BS11229.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26410271..26410605 1598..1932 100 <- Minus
arm_3R 26410797..26410942 1452..1597 100 <- Minus
arm_3R 26411011..26411313 1149..1451 100 <- Minus
arm_3R 26411659..26412790 17..1148 100   Minus

BS11229.pep Sequence

Translation from 16 to 1932

> BS11229.pep
MSQRADSGHTNSGFNGGSEVSLDIPTNTLYHTSRDCIVQEEQGPDESCLE
GTQSCCSNLWSNIFRKKTLYKRFPILVWLPQYKKDYIFGDIVAGISVALT
VIPQALAYAGIAGLDLQYGLYACFLGCFIYIFIGSSKDVPIGPTAISALL
SFQIAGGSWQIATLLTFLTGLIEILMGVFRLGFLIDFVSGPVGAGFTSAV
SLIIFSSQMKDFLGIKTSGNTFLQVWISIVNDIHNISWPDFILGIVCITL
LLSLRALASCTLGPKEGKTTAQKLLTGIFWTIGTARNALLVCGTAGLGYW
LFVNGKENLVKTVGFVPKGLPSFQPPPFHMDAVVNETTGEVLQEAQSFWD
MVSTLGSGLIVVPLIALLETMAVVQAFADGKPTDATQELIASGVCNVANS
FVQGLRSNGGIARGAILNASGVRTQLSNLYTSVIVIIALLYLTPCFYYIP
KAALASIIIAAVIFMVQYRVIKPMWHSKKTDLIPGLGAFFACLVLPLQLG
ILVGIGINVVFILYQAARPKLRIETLATTTGLKYLMLTPDRCLIFPSMEF
VRKVINKQGQKSTLPVVIDCTHIYGADFTAAKVISTMVMDFKLREQPLFF
YNLQPRVAQVFEGLNKDLVVIYDINTLHAKLAEKSPPI*

BS11229.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-PA 638 CG9717-PA 1..638 1..638 3278 100 Plus
Esp-PB 654 CG7005-PB 56..631 44..622 1665 54.6 Plus
Esp-PA 654 CG7005-PA 56..631 44..622 1665 54.6 Plus
CG9702-PB 676 CG9702-PB 28..645 21..638 1645 52 Plus
CG9702-PA 676 CG9702-PA 28..645 21..638 1645 52 Plus