Clone Sequence Records
BS11229.3prime Sequence
860 bp (789 high quality bases) assembled on 2006-04-18
> BS11229.3prime
ATGGTCTAGAAAGCTTTCAGATCGGGGGCGACTTCTCCGCCAGCTTGGCG
TGCAGGGTGTTAATATCGTATATGACCACCAGATCCTTGTTCAGACCCTC
GAAGACCTGCGCCACTCGCGGCTGCAGGTTGTAGAAGAACAGCGGCTGCT
CCCGCAGCTTAAAGTCCATCACCATGGTGGATATCACCTTGGCGGCCGTG
AAGTCCGCTCCATAGATGTGGGTGCAATCGATGACCACCGGCAGTGTGGA
CTTCTGACCCTGCTTGTTGATCACCTTGCGCACAAACTCCATCGAGGGGA
AGATCAGACAGCGATCGGGAGTTAGCATTAGGTATTTCAGACCAGTAGTT
GTCGCCAGCGTTTCGATGCGCAACTTTGGCCGGGCTGCCTGGTAGAGGAT
GAAGACCACATTGATGCCGATGCCCACGAGGATGCCCAGTTGCAGGGGCA
GAACCAGACAGGCGAAAAAGGCACCCAGGCCGGGAATGAGATCGGTTTTT
TTACTGTGCCACATGGGCTTGATCACTCGGTACTGGACCATGAAAATAAC
CGCCGCAATAATAATGGAGGCCAGAGCCGCCTTAGGAATGTAGTAAAAGC
AGGGCGTGAGGTACAACAGGGCAATAATCACTATCACGCTGGTGTAGAGA
TTGGACAGCTGGGTCCTCACTCCACTGGCATTTAAGATGGCTCCCCTGGC
GATGCCGCCATTGCTCCGAAGACCCTGGACAAAGGAGTTGGCCACGTTGC
ACACTCCAGAGGCTATCAGCTCCTGCGTGGCATCTGTGGGTTTGCCATCA
GCGAAAGCCTGAACCACGGCCATAGTTTCCAGAAGAGCAATCAATGGAAC
CACAATGAGC
BS11229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-PA | 1917 | CG9717-RA | 1074..1917 | 860..17 | 4195 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-RA | 2679 | CG9717-RA | 1308..2151 | 860..17 | 4205 | 99.9 | Minus |
CG9702-RB | 2111 | CG9702-RB | 1390..1810 | 590..170 | 295 | 72.2 | Minus |
CG9702-RA | 2318 | CG9702-RA | 1597..2017 | 590..170 | 295 | 72.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 18:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30584548..30584884 | 17..353 | 1685 | 100 | Plus |
3R | 32079331 | 3R | 30585289..30585596 | 499..806 | 1525 | 99.7 | Plus |
3R | 32079331 | 3R | 30585075..30585220 | 353..498 | 730 | 100 | Plus |
3R | 32079331 | 3R | 30585933..30585995 | 798..860 | 285 | 96.8 | Plus |
3R | 32079331 | 3R | 30581676..30581816 | 310..170 | 240 | 78 | Minus |
Blast to na_te.dros performed on 2015-02-03 18:07:29 has no hits.
BS11229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:34 Download gff for
BS11229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-PA | 1074..1917 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:57 Download gff for
BS11229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-PA | 1074..1917 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:40:31 Download gff for
BS11229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 1308..2151 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:06:57 Download gff for
BS11229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 1308..2151 | 17..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:06:57 Download gff for
BS11229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30584548..30584883 | 17..352 | 100 | <- | Plus |
3R | 30585075..30585220 | 353..498 | 100 | <- | Plus |
3R | 30585289..30585591 | 499..801 | 100 | <- | Plus |
3R | 30585937..30585995 | 802..860 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:40:31 Download gff for
BS11229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26410270..26410605 | 17..352 | 100 | <- | Plus |
arm_3R | 26410797..26410942 | 353..498 | 100 | <- | Plus |
arm_3R | 26411011..26411313 | 499..801 | 100 | <- | Plus |
arm_3R | 26411659..26411717 | 802..860 | 98 | | Plus |
BS11229.5prime Sequence
874 bp (798 high quality bases) assembled on 2006-04-18
> BS11229.5prime
GAAGTTATCAGTCGACATGAGCCAAAGAGCTGACAGCGGTCACACGAATA
GTGGCTTCAATGGTGGATCCGAGGTGTCCTTGGACATACCCACCAACACG
CTGTACCACACCTCGCGCGACTGCATTGTGCAGGAGGAGCAGGGTCCCGA
TGAGAGCTGCCTGGAGGGAACTCAAAGCTGTTGCTCAAACCTCTGGTCCA
ACATCTTCAGGAAGAAAACGCTGTACAAGCGATTCCCCATCCTGGTGTGG
CTGCCCCAGTACAAAAAGGATTATATTTTCGGTGACATAGTGGCGGGCAT
TTCGGTGGCCCTGACGGTGATACCCCAGGCCCTGGCCTATGCCGGAATAG
CAGGACTGGATCTGCAGTACGGCCTGTACGCCTGCTTCCTGGGCTGCTTC
ATATACATATTTATTGGGTCCAGTAAGGATGTGCCTATTGGACCTACGGC
CATATCAGCACTGCTGTCCTTTCAAATCGCTGGAGGCAGTTGGCAGATAG
CCACCTTGCTAACCTTCCTCACAGGTCTCATTGAGATCCTGATGGGAGTT
TTCCGGCTGGGATTTCTCATCGATTTCGTTTCTGGTCCCGTGGGAGCGGG
ATTCACGAGTGCCGTGTCCTTGATCATCTTCAGCTCCCAGATGAAGGACT
TCTTGGGCATCAAAACAAGTGGCAACACCTTCCTGCAAGTGTGGATTAGC
ATTGTGAACGATATACACAACATCAGCTGGCCGGACTTCATCTTGGGAAT
CGTCTGCATTACTCTGCTCCTGAGCCTGAGAGCCCTGGCCAGTTGTACCC
TGGGTCCCAAGGAGGGAAAACCACAGCGCAAAAGCTTCTGACCGGCATTT
TCTGGACCATCGGAACTGCCCGCA
BS11229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-PA | 1917 | CG9717-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
CG9717-PA | 1917 | CG9717-RA | 802..859 | 817..874 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-RA | 2679 | CG9717-RA | 235..1093 | 17..874 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30586210..30587068 | 874..17 | 4245 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 07:13:17 has no hits.
BS11229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:35 Download gff for
BS11229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-PA | 1..858 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:30:59 Download gff for
BS11229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-PA | 1..858 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:29:56 Download gff for
BS11229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 235..1092 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:47:53 Download gff for
BS11229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 235..1092 | 17..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:47:53 Download gff for
BS11229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30586211..30587068 | 17..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:29:56 Download gff for
BS11229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26411933..26412790 | 17..873 | 99 | | Minus |
BS11229.complete Sequence
1949 bp assembled on 2008-08-15
GenBank Submission: KX803810
> BS11229.complete
GAAGTTATCAGTCGACATGAGCCAAAGAGCTGACAGCGGTCACACGAATA
GTGGCTTCAATGGTGGATCCGAGGTGTCCTTGGACATACCCACCAACACG
CTGTACCACACCTCGCGCGACTGCATTGTGCAGGAGGAGCAGGGTCCCGA
TGAGAGCTGCCTGGAGGGAACTCAAAGCTGTTGCTCAAACCTCTGGTCCA
ACATCTTCAGGAAGAAAACGCTGTACAAGCGATTCCCCATCCTGGTGTGG
CTGCCCCAGTACAAAAAGGATTATATTTTCGGTGACATAGTGGCGGGCAT
TTCGGTGGCCCTGACGGTGATACCCCAGGCCCTGGCCTATGCCGGAATAG
CAGGACTGGATCTGCAGTACGGCCTGTACGCCTGCTTCCTGGGCTGCTTC
ATATACATATTTATTGGGTCCAGTAAGGATGTGCCTATTGGACCTACGGC
CATATCAGCACTGCTGTCCTTTCAAATCGCTGGAGGCAGTTGGCAGATAG
CCACCTTGCTAACCTTCCTCACAGGTCTCATTGAGATCCTGATGGGAGTT
TTCCGGCTGGGATTTCTCATCGATTTCGTTTCTGGTCCCGTGGGAGCGGG
ATTCACGAGTGCCGTGTCCTTGATCATCTTCAGCTCCCAGATGAAGGACT
TCTTGGGCATCAAAACAAGTGGCAACACCTTCCTGCAAGTGTGGATTAGC
ATTGTGAACGATATACACAACATCAGCTGGCCGGACTTCATCTTGGGAAT
CGTCTGCATTACTCTGCTCCTGAGCCTGAGAGCCCTGGCCAGTTGTACCC
TGGGTCCCAAGGAGGGAAAAACCACAGCGCAAAAGCTTCTGACCGGCATT
TTCTGGACCATCGGAACTGCCCGCAATGCCCTGCTGGTCTGTGGAACTGC
TGGCCTGGGTTACTGGTTGTTTGTCAACGGCAAGGAGAATCTCGTGAAGA
CAGTTGGCTTTGTGCCCAAGGGATTGCCCTCCTTTCAGCCACCACCCTTC
CACATGGATGCCGTTGTCAACGAAACCACAGGAGAAGTCCTTCAGGAGGC
CCAGAGCTTCTGGGACATGGTCAGCACCCTGGGATCTGGGCTCATTGTGG
TTCCATTGATTGCTCTTCTGGAAACTATGGCCGTTGTTCAGGCTTTCGCT
GATGGCAAACCCACAGATGCCACGCAGGAGCTGATAGCCTCTGGAGTGTG
CAACGTGGCCAACTCCTTTGTCCAGGGTCTTCGGAGCAATGGCGGCATCG
CCAGGGGAGCCATCTTAAATGCCAGTGGAGTGAGGACCCAGCTGTCCAAT
CTCTACACCAGCGTGATAGTGATTATTGCCCTGTTGTACCTCACGCCCTG
CTTTTACTACATTCCTAAGGCGGCTCTGGCCTCCATTATTATTGCGGCGG
TTATTTTCATGGTCCAGTACCGAGTGATCAAGCCCATGTGGCACAGTAAA
AAAACCGATCTCATTCCCGGCCTGGGTGCCTTTTTCGCCTGTCTGGTTCT
GCCCCTGCAACTGGGCATCCTCGTGGGCATCGGCATCAATGTGGTCTTCA
TCCTCTACCAGGCAGCCCGGCCAAAGTTGCGCATCGAAACGCTGGCGACA
ACTACTGGTCTGAAATACCTAATGCTAACTCCCGATCGCTGTCTGATCTT
CCCCTCGATGGAGTTTGTGCGCAAGGTGATCAACAAGCAGGGTCAGAAGT
CCACACTGCCGGTGGTCATCGATTGCACCCACATCTATGGAGCGGACTTC
ACGGCCGCCAAGGTGATATCCACCATGGTGATGGACTTTAAGCTGCGGGA
GCAGCCGCTGTTCTTCTACAACCTGCAGCCGCGAGTGGCGCAGGTCTTCG
AGGGTCTGAACAAGGATCTGGTGGTCATATACGATATTAACACCCTGCAC
GCCAAGCTGGCGGAGAAGTCGCCCCCGATCTGAAAGCTTTCTAGACCAT
BS11229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-RA | 1917 | CG9717-PA | 1..1917 | 17..1933 | 9585 | 100 | Plus |
CG9702-RB | 2031 | CG9702-PB | 1365..1785 | 1360..1780 | 245 | 70.5 | Plus |
CG9702-RA | 2031 | CG9702-PA | 1365..1785 | 1360..1780 | 245 | 70.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-RA | 2679 | CG9717-RA | 235..2151 | 17..1933 | 9585 | 100 | Plus |
CG9702-RB | 2111 | CG9702-RB | 1390..1810 | 1360..1780 | 245 | 70.5 | Plus |
CG9702-RA | 2318 | CG9702-RA | 1597..2017 | 1360..1780 | 245 | 70.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30585933..30587068 | 1152..17 | 5665 | 99.9 | Minus |
3R | 32079331 | 3R | 30584548..30584884 | 1933..1597 | 1685 | 100 | Minus |
3R | 32079331 | 3R | 30585289..30585596 | 1451..1144 | 1525 | 99.7 | Minus |
3R | 32079331 | 3R | 30585075..30585220 | 1597..1452 | 730 | 100 | Minus |
3R | 32079331 | 3R | 30581676..30581816 | 1640..1780 | 240 | 78 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:25:00 has no hits.
BS11229.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:19:28 Download gff for
BS11229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 232..2148 | 17..1933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:08 Download gff for
BS11229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 235..2150 | 17..1932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:19 Download gff for
BS11229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 232..2147 | 17..1932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:28 Download gff for
BS11229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 235..2150 | 17..1932 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:28 Download gff for
BS11229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30584549..30584883 | 1598..1932 | 100 | <- | Minus |
3R | 30585075..30585220 | 1452..1597 | 100 | <- | Minus |
3R | 30585289..30585591 | 1149..1451 | 100 | <- | Minus |
3R | 30585937..30587068 | 17..1148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:08 Download gff for
BS11229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26410271..26410605 | 1598..1932 | 100 | <- | Minus |
arm_3R | 26410797..26410942 | 1452..1597 | 100 | <- | Minus |
arm_3R | 26411011..26411313 | 1149..1451 | 100 | <- | Minus |
arm_3R | 26411659..26412790 | 17..1148 | 100 | | Minus |
BS11229.pep Sequence
Translation from 16 to 1932
> BS11229.pep
MSQRADSGHTNSGFNGGSEVSLDIPTNTLYHTSRDCIVQEEQGPDESCLE
GTQSCCSNLWSNIFRKKTLYKRFPILVWLPQYKKDYIFGDIVAGISVALT
VIPQALAYAGIAGLDLQYGLYACFLGCFIYIFIGSSKDVPIGPTAISALL
SFQIAGGSWQIATLLTFLTGLIEILMGVFRLGFLIDFVSGPVGAGFTSAV
SLIIFSSQMKDFLGIKTSGNTFLQVWISIVNDIHNISWPDFILGIVCITL
LLSLRALASCTLGPKEGKTTAQKLLTGIFWTIGTARNALLVCGTAGLGYW
LFVNGKENLVKTVGFVPKGLPSFQPPPFHMDAVVNETTGEVLQEAQSFWD
MVSTLGSGLIVVPLIALLETMAVVQAFADGKPTDATQELIASGVCNVANS
FVQGLRSNGGIARGAILNASGVRTQLSNLYTSVIVIIALLYLTPCFYYIP
KAALASIIIAAVIFMVQYRVIKPMWHSKKTDLIPGLGAFFACLVLPLQLG
ILVGIGINVVFILYQAARPKLRIETLATTTGLKYLMLTPDRCLIFPSMEF
VRKVINKQGQKSTLPVVIDCTHIYGADFTAAKVISTMVMDFKLREQPLFF
YNLQPRVAQVFEGLNKDLVVIYDINTLHAKLAEKSPPI*
BS11229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-PA | 638 | CG9717-PA | 1..638 | 1..638 | 3278 | 100 | Plus |
Esp-PB | 654 | CG7005-PB | 56..631 | 44..622 | 1665 | 54.6 | Plus |
Esp-PA | 654 | CG7005-PA | 56..631 | 44..622 | 1665 | 54.6 | Plus |
CG9702-PB | 676 | CG9702-PB | 28..645 | 21..638 | 1645 | 52 | Plus |
CG9702-PA | 676 | CG9702-PA | 28..645 | 21..638 | 1645 | 52 | Plus |