Clone Sequence Records
BS11233.5prime Sequence
375 bp (374 high quality bases) assembled on 2006-04-18
> BS11233.5prime
GAAGTTATCAGTCGACATGCGTTCCCTGATTCTTGTCGCTCTTTTGGCCT
TCTTGGCTGTTGGCTTTGTGGCTGCCCGTCCAGCTGAGGATGAGGAGTCC
TCCGCTGCCGTGGTTGAGAATGCCGATGAGGATTCGACTAGCAATGATGC
GGAGAGCACCGAAGCCACTGATGCGGAGGAATCTTCTGATGATGAGGAGA
CGACTGAAGAGTCTGGTGATGCCGCTGACGAATCCAGCGATGATGCCGAT
GAGGATGAGACAACCACTGCAGCTTCGGCCAAGAAGCAGATCCGTCCCTT
CTGGCCCAGGTTCGGAGGTCATGGTCCAGTTGTGATCAGGCGTCACCCTA
GTCTTGTCTAGAAGCTTTCTAGACC
BS11233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-PA | 345 | CG12310-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
| CG13461-PA | 414 | CG13461-RA | 22..87 | 38..103 | 180 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-RA | 544 | CG12310-RA | 42..386 | 17..361 | 1725 | 100 | Plus |
| CG13461-RA | 560 | CG13461-RA | 16..102 | 17..103 | 255 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15050421..15050765 | 361..17 | 1725 | 100 | Minus |
| 3L | 28110227 | 3L | 15052389..15052475 | 103..17 | 255 | 86.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:01:22 has no hits.
BS11233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:41 Download gff for
BS11233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-PA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:08 Download gff for
BS11233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-PA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:34 Download gff for
BS11233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 37..386 | 12..361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:47 Download gff for
BS11233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 37..386 | 12..361 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:47 Download gff for
BS11233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15050421..15050770 | 12..361 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:34 Download gff for
BS11233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15043521..15043870 | 12..361 | 99 | | Minus |
BS11233.3prime Sequence
375 bp (374 high quality bases) assembled on 2006-04-18
> BS11233.3prime
ATGGTCTAGAAAGCTTCTAGACAAGACTAGGGTGACGCCTGATCACAACT
GGACCATGACCTCCGAACCTGGGCCAGAAGGGACGGATCTGCTTCTTGGC
CGAAGCTGCAGTGGTTGTCTCATCCTCATCGGCATCATCGCTGGATTCGT
CAGCGGCATCACCAGACTCTTCAGTCGTCTCCTCATCATCAGAAGATTCC
TCCGCATCAGTGGCTTCGGTGCTCTCCGCATCATTGCTAGTCGAATCCTC
ATCGGCATTCTCAACCACGGCAGCGGAGGACTCCTCATCCTCAGCTGGAC
GGGCAGCCACAAAGCCAACAGCCAAGAAGGCCAAAAGAGCGACAAGAATC
AGGGAACGCATGTCGACTGATAACT
BS11233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-PA | 345 | CG12310-RA | 1..345 | 361..17 | 1725 | 100 | Minus |
| CG13461-PA | 414 | CG13461-RA | 22..87 | 340..275 | 180 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-RA | 544 | CG12310-RA | 42..386 | 361..17 | 1725 | 100 | Minus |
| CG13461-RA | 560 | CG13461-RA | 16..102 | 361..275 | 255 | 86.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15050421..15050765 | 17..361 | 1725 | 100 | Plus |
| 3L | 28110227 | 3L | 15052389..15052475 | 275..361 | 255 | 86.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:24:49 has no hits.
BS11233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:40 Download gff for
BS11233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-PA | 1..345 | 17..361 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:06 Download gff for
BS11233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-PA | 1..345 | 17..361 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:14:59 Download gff for
BS11233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 37..386 | 17..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:06:55 Download gff for
BS11233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 37..386 | 17..366 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:06:55 Download gff for
BS11233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15050421..15050770 | 17..366 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:14:59 Download gff for
BS11233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15043521..15043870 | 17..366 | 99 | | Plus |
BS11233.complete Sequence
377 bp assembled on 2006-11-01
GenBank Submission: FJ636791
> BS11233.complete
GAAGTTATCAGTCGACATGCGTTCCCTGATTCTTGTCGCTCTTTTGGCCT
TCTTGGCTGTTGGCTTTGTGGCTGCCCGTCCAGCTGAGGATGAGGAGTCC
TCCGCTGCCGTGGTTGAGAATGCCGATGAGGATTCGACTAGCAATGATGC
GGAGAGCACCGAAGCCACTGATGCGGAGGAATCTTCTGATGATGAGGAGA
CGACTGAAGAGTCTGGTGATGCCGCTGACGAATCCAGCGATGATGCCGAT
GAGGATGAGACAACCACTGCAGCTTCGGCCAAGAAGCAGATCCGTCCCTT
CTGGCCCAGGTTCGGAGGTCATGGTCCAGTTGTGATCAGGCGTCACCCTA
GTCTTGTCTAGAAGCTTTCTAGACCAT
BS11233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-RA | 345 | CG12310-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
| CG13461-RA | 414 | CG13461-PA | 1..87 | 17..103 | 255 | 86.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-RA | 544 | CG12310-RA | 42..386 | 17..361 | 1725 | 100 | Plus |
| CG13461-RA | 560 | CG13461-RA | 16..102 | 17..103 | 255 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15050421..15050765 | 361..17 | 1725 | 100 | Minus |
| 3L | 28110227 | 3L | 15052389..15052475 | 103..17 | 255 | 86.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:02:40 has no hits.
BS11233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:30 Download gff for
BS11233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:43 Download gff for
BS11233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 36..385 | 12..361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:18 Download gff for
BS11233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 42..386 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:30 Download gff for
BS11233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 36..385 | 12..361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:01 Download gff for
BS11233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 42..386 | 17..361 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:01 Download gff for
BS11233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15050421..15050765 | 17..361 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:18 Download gff for
BS11233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15043521..15043865 | 17..361 | 100 | | Minus |
BS11233.pep Sequence
Translation from 16 to 360
> BS11233.pep
MRSLILVALLAFLAVGFVAARPAEDEESSAAVVENADEDSTSNDAESTEA
TDAEESSDDEETTEESGDAADESSDDADEDETTTAASAKKQIRPFWPRFG
GHGPVVIRRHPSLV*
BS11233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-PA | 114 | CG12310-PA | 1..114 | 1..114 | 568 | 100 | Plus |
| CG13461-PA | 137 | CG13461-PA | 1..133 | 1..111 | 192 | 38 | Plus |
