Clone Sequence Records
BS11235.3prime Sequence
790 bp (721 high quality bases) assembled on 2006-04-18
> BS11235.3prime
ATGGTCTAGAAAGCTTTTACATTTTCGAAACTGGTTTAAGGCCTAGTATA
TAAAAGCATTGGCGCAACACAGCCGCAGTTGCCTCGCACAATAGAATTCG
GCTATGATTGACCCCAATAATATCGCCTTGTTTGTTCTTTTCGATGCAAT
AACAAGAGTCATAGAATTCGGTGAACACTGTGCACACCTCGAAGCAAAAC
TCGCACAGGAAGTGCAGGAAAAGTTCCTTTGAGCACTTGATGAGTATGTC
GTGGAGTTTCAGTAGAGTCTTAGCCAGCTTCCATTCCTTTTCGTGGTCCA
ACACAATGTTGGTCTTCTTCAGTATTTCGGGTAAATTGGTGAAATCTTCG
CCAGAGTTTCGTGCAATGGAGCAAATACGTGTGTAGGTGTAAAGTAAGTA
CACCGCAGTGTTGCCGCGATCCTCAAGCATCTTATCGAACGAAAATATAT
AGTCGCTGATCCGGTTGTGACATAAATCCGAATACTTAATGCATCCATAT
GCCAGCGACTCTTGGGCGTCCTTCAGTTCCTGTGGCGTGAGGACCTTATC
GCGGCCACGACTCTCCAATTGCTGCAGGGATCGCTTCATTCCCTCATCCA
GCAAATCGGACAGCTTAACCGTATCACCCGATCGAGTCTTAAACTTCTTG
CCATCCTCGCCCAGAACGACGCCAAACTGTACGTGGTCAACACGATGGCT
GAGTGGATTTAGGATAGCAGATCGTTCGGCAGCTTTGAATATGGTATTAA
AATGCGTGCTTTGGCCGGAGTCGACCACATAAATGATCCA
BS11235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9020-PA | 1998 | Aats-arg-RA | 1225..1998 | 790..17 | 3845 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-RA | 2135 | CG9020-RA | 1289..2064 | 790..15 | 3865 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15841840..15842615 | 15..790 | 3865 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:38:27 has no hits.
BS11235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:44 Download gff for
BS11235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9020-PA | 1226..1998 | 17..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:13 Download gff for
BS11235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9020-PA | 1226..1998 | 17..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:28:24 Download gff for
BS11235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 1290..2071 | 7..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:02 Download gff for
BS11235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 1290..2071 | 7..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:02 Download gff for
BS11235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15841833..15842614 | 7..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:28:24 Download gff for
BS11235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15735866..15736647 | 7..789 | 99 | | Plus |
BS11235.5prime Sequence
873 bp (782 high quality bases) assembled on 2006-04-18
> BS11235.5prime
GAAGTTATCAGTCGACATGTCCGAGCTAAATATGGAGCTGAAAAAACTCA
GGGAGCTGGAACTGAAGACCCAAGGCCTTGCCGCCAGAATACAAACTGCC
AAAAGCGGTGAACAGTTGGACGTCGATCTTGTTCAGCTTCAAATTGAAAA
TAAGAAGCTGAAGAACCGCCTGTTTATCCTAAAGAAGTCCATTGCTGAGG
AATCAACTGCCGCCGGCGGCGACGTTTCGAAGCCCAAGGAATCCTCTTCG
ATCACCGAACACCTGGAAAGCGTCTTTCGCCAGGCGATTGCATCAGCTTT
CCCGGAATTCAGAGATACGCCTGTTATAATTGCACCAGTTAATAGTACGT
CTGCGAAATTCGGCGACTATCAGTGCAACAATGCCATGGGATTGTCCAAG
AAGCTGAAAGAGAAGGGCATTAATAAAGCACCACGTGATATTGCAACCGA
GTTGAAAGGACACTGCCCAGCATCACCAATCATTGAAAAGCTGGAAATTG
CCGGAGCTGGCTTCGTAAACGTGTTCCTTAGCAAAGATTATGCATCTTTA
GCCTTAAGCAATCTATTGCGTAACGGTGTCAAGCCGCCAGAAGTGATCAA
AAAGCGAGTCCTGGTCGACTTTTCATCGCCCAACATTGCCAAACAGATGC
ATGTCGGTCACTTGCGGTCCACGATCATTGGCGAGTCGTTATGCCGCTTG
CTGGAGTTCCTGCAGCACGATGTGATCCGCATCAACCACCTGGGTGACTG
GGGAACACAGTTTGGCATGCTGATTGCCCATTTGGGAGATCGTTTCCCCA
ACTACCTAAATGAAAGCCCTCCGATCAGTGATCTGCAATTGTTCTACAAG
GAATCCAAGAAGCGATTCGATGA
BS11235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9020-PA | 1998 | Aats-arg-RA | 1..857 | 17..873 | 4260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-RA | 2135 | CG9020-RA | 63..921 | 15..873 | 4280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15843443..15843791 | 534..186 | 1745 | 100 | Minus |
| X | 23542271 | X | 15843055..15843388 | 864..531 | 1640 | 99.4 | Minus |
| X | 23542271 | X | 15843853..15843982 | 187..58 | 650 | 100 | Minus |
| X | 23542271 | X | 15844039..15844083 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:06:31 has no hits.
BS11235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:45 Download gff for
BS11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9020-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:14 Download gff for
BS11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9020-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:35 Download gff for
BS11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 63..920 | 15..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:32 Download gff for
BS11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 63..920 | 15..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:32 Download gff for
BS11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15843049..15843384 | 535..870 | 98 | <- | Minus |
| X | 15843443..15843789 | 188..534 | 100 | <- | Minus |
| X | 15843853..15843981 | 59..187 | 100 | <- | Minus |
| X | 15844040..15844083 | 15..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:35 Download gff for
BS11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15737082..15737417 | 535..870 | 98 | <- | Minus |
| arm_X | 15737476..15737822 | 188..534 | 100 | <- | Minus |
| arm_X | 15737886..15738014 | 59..187 | 100 | <- | Minus |
| arm_X | 15738073..15738116 | 15..58 | 100 | | Minus |
BS11235.complete Sequence
2030 bp assembled on 2008-08-15
GenBank Submission: KX805335
> BS11235.complete
GAAGTTATCAGTCGACATGTCCGAGCTAAATATGGAGCTGAAAAAACTCA
GGGAGCTGGAACTGAAGACCCAAGGCCTTGCCGCCAGAATACAAACTGCC
AAAAGCGGTGAACAGTTGGACGTCGATCTTGTTCAGCTTCAAATTGAAAA
TAAGAAGCTGAAGAACCGCCTGTTTATCCTAAAGAAGTCCATTGCTGAGG
AATCAACTGCCGCCGGCGGCGACGTTTCGAAGCCCAAGGAATCCTCTTCG
ATCACCGAACACCTGGAAAGCGTCTTTCGCCAGGCGATTGCATCAGCTTT
CCCGGAATTCAGAGATACGCCTGTTATAATTGCACCAGTTAATAGTACGT
CTGCGAAATTCGGCGACTATCAGTGCAACAATGCCATGGGATTGTCCAAG
AAGCTGAAAGAGAAGGGCATTAATAAAGCACCACGTGATATTGCAACCGA
GTTGAAAGGACACTGCCCAGCATCACCAATCATTGAAAAGCTGGAAATTG
CCGGAGCTGGCTTCGTAAACGTGTTCCTTAGCAAAGATTATGCATCTTTA
GCCTTAAGCAATCTATTGCGTAACGGTGTCAAGCCGCCAGAAGTGATCAA
AAAGCGAGTCCTGGTCGACTTTTCATCGCCCAACATTGCCAAACAGATGC
ATGTCGGTCACTTGCGGTCCACGATCATTGGCGAGTCGTTATGCCGCTTG
CTGGAGTTCCTGCAGCACGATGTGATCCGCATCAACCACCTGGGTGACTG
GGGAACACAGTTTGGCATGCTGATTGCCCATTTGGAAGATCGTTTCCCCA
ACTACCTAAATGAAAGCCCTCCGATCAGTGATCTGCAATTGTTCTACAAG
GAATCCAAGAAGCGATTCGATGAAGATGAGGAGTTCAAAAAACGTGCCTA
CAGTCGAGTGGTTTCATTGCAGAAAGGTGTGCCGAACTCCATTAAGGCGT
GGGAGCTAATTTGCAATGTGTCGCGAAAGGAGTTCCAAACGATCTACGAA
CGATTAGATATTAGCGTCAAGGAACGGGGGGAATCGTTCTACCAATCACG
TATGCTGTCCGTTGTGGAATACTTGCGAGGCAAGGGTCTGCTGGAAGTGG
ATGAAGGACGCGAGATCATGTGGCCAGACGATACGAAAACTGGCATACCT
CTGACAATCGTGAAATCGGATGGCGGCTTTACCTATGATACCTCTGACAT
GGCAGCCATTCGCCATCGCTTGGAGGAGGAGCTTTGCGATTGGATCATCT
ATGTGGTCGACTCCGGCCAAAGCACGCATTTTAATACCATATTCAAAGCT
GCCGAACGATCTGCTATCCTAAATCCACTCAGCCATCGTGTTGACCACGT
ACAGTTTGGCGTCGTTCTGGGCGAGGATGGCAAGAAGTTTAAGACTCGAT
CGGGTGATACGGTTAAGCTGTCCGATTTGCTGGATGAGGGAATGAAGCGA
TCCCTGCAGCAATTGGAGAGTCGTGGCCGCGATAAGGTCCTCACGCCACA
GGAACTGAAGGACGCCCAAGAGTCGCTGGCATATGGATGCATTAAGTATT
CGGATTTATGTCACAACCGGATCAGCGACTATATATTTTCGTTCGATAAG
ATGCTTGAGGATCGCGGCAACACTGCGGTGTACTTACTTTACACCTACAC
ACGTATTTGCTCCATTGCACGAAACTCTGGCGAAGATTTCACCAATTTAC
CCGAAATACTGAAGAAGACCAACATTGTGTTGGACCACGAAAAGGAATGG
AAGCTGGCTAAGACTCTACTGAAACTCCACGACATACTCATCAAGTGCTC
AAAGGAACTTTTCCTGCACTTCCTGTGCGAGTTTTGCTTCGAGGTGTGCA
CAGTGTTCACCGAATTCTATGACTCTTGTTATTGCATCGAAAAGAACAAA
CAAGGCGATATTATTGGGGTCAATCATAGCCGAATTCTATTGTGCGAGGC
AACTGCGGCTGTGTTGCGCCAATGCTTTTATATACTAGGCCTTAAACCAG
TTTCGAAAATGTAAAAGCTTTCTAGACCAT
BS11235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-RA | 1998 | CG9020-PA | 1..1998 | 17..2014 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-RA | 2135 | CG9020-RA | 63..2064 | 15..2016 | 10010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15841840..15842992 | 2016..864 | 5765 | 100 | Minus |
| X | 23542271 | X | 15843443..15843791 | 534..186 | 1745 | 100 | Minus |
| X | 23542271 | X | 15843055..15843388 | 864..531 | 1655 | 99.7 | Minus |
| X | 23542271 | X | 15843853..15843982 | 187..58 | 650 | 100 | Minus |
| X | 23542271 | X | 15844039..15844083 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:17:28 has no hits.
BS11235.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:29:29 Download gff for
BS11235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 54..2062 | 15..2024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:15 Download gff for
BS11235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 65..2060 | 17..2012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:26 Download gff for
BS11235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 56..2051 | 17..2012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:57 Download gff for
BS11235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 65..2060 | 17..2012 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:57 Download gff for
BS11235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15843055..15843384 | 535..864 | 100 | <- | Minus |
| X | 15843443..15843789 | 188..534 | 100 | <- | Minus |
| X | 15843853..15843981 | 59..187 | 100 | <- | Minus |
| X | 15844040..15844081 | 17..58 | 100 | | Minus |
| X | 15841844..15842991 | 865..2012 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:15 Download gff for
BS11235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15735877..15737024 | 865..2012 | 100 | <- | Minus |
| arm_X | 15737088..15737417 | 535..864 | 100 | <- | Minus |
| arm_X | 15737476..15737822 | 188..534 | 100 | <- | Minus |
| arm_X | 15737886..15738014 | 59..187 | 100 | <- | Minus |
| arm_X | 15738073..15738114 | 17..58 | 100 | | Minus |
BS11235.pep Sequence
Translation from 16 to 2013
> BS11235.pep
MSELNMELKKLRELELKTQGLAARIQTAKSGEQLDVDLVQLQIENKKLKN
RLFILKKSIAEESTAAGGDVSKPKESSSITEHLESVFRQAIASAFPEFRD
TPVIIAPVNSTSAKFGDYQCNNAMGLSKKLKEKGINKAPRDIATELKGHC
PASPIIEKLEIAGAGFVNVFLSKDYASLALSNLLRNGVKPPEVIKKRVLV
DFSSPNIAKQMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFG
MLIAHLEDRFPNYLNESPPISDLQLFYKESKKRFDEDEEFKKRAYSRVVS
LQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKERGESFYQSRMLSVV
EYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAAIRH
RLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVV
LGEDGKKFKTRSGDTVKLSDLLDEGMKRSLQQLESRGRDKVLTPQELKDA
QESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRGNTAVYLLYTYTRICSI
ARNSGEDFTNLPEILKKTNIVLDHEKEWKLAKTLLKLHDILIKCSKELFL
HFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIGVNHSRILLCEATAAVL
RQCFYILGLKPVSKM*
BS11235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-PA | 665 | CG9020-PA | 1..665 | 1..665 | 3429 | 100 | Plus |
| CG10092-PB | 594 | CG10092-PB | 129..594 | 190..665 | 462 | 29.2 | Plus |
| CG10092-PA | 594 | CG10092-PA | 129..594 | 190..665 | 462 | 29.2 | Plus |
