Clone BS11240 Report

Search the DGRC for BS11240

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptnes-RA
Protein status:BS11240.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11240.3prime Sequence

808 bp (776 high quality bases) assembled on 2006-04-18

> BS11240.3prime
ATGGTCTAGAAAGCTTCTACTCAGACTTCTTATCTTCTGGTTTCTTTTCC
TCTACGAGTTTGTCCGTGTTGCTGTCCTGCAACTTCTGATCCTCTCCAGC
TAGTTTCCGGGAACTGCTCCGGAAAAAGTGATTGAAGGTATGATAGAAGG
CAGCCCAGAGTACTAGGAAAGTGAATCCATAGTAGCTGACCGCTCCGTAC
ACCACGATCCAGCGCTCGTATTTCAGAAACACAAATGCGGTCAGGCACCA
GCCCATGTACACAACGTTGTACGACTTGAGGGTGATGAAATAAAGCAGCT
TGTAGATGTCCGAGTTGTTCAGAATGTGGCCCCACTGGGGTAACACCACT
TTGGTGTAGAAGCGGGTTATTTGTTTTTCGGTGCTCACAACCATGTATTC
CATGAGGAATGTCATGTAGTAACCGCTGTGGTATCCGTGCCAGACCGCCA
AGAAACCCAAAGCCGCGCCATAGCTGATTGTGCGGTTGTTGAGGAACTTA
AGTCGCTTGTAGATATACTGTCCAACCCATTGGTTCGTGTTTACATTGAA
GCTTTGAACGTAGTGCTCCATGGTGTTCCCAGTCTCCAGCAGCTTTAGCT
TCACATTGCTGCAGCCCGACCAATCGGGCTGTCCGTTCTTGTCCTCGCCC
TTGTAGGTCAGACCAATGCAAATAAGGGCGCCCTCGGTGAGCAGCCAGCA
GGATATGTACTTGTACAGACTGAATTTGGCCCAAAAGCCGAGTAAATAAA
TCCTCTTGACGAATGAAACTTGCGCAAACTCCGGAGTGAGGAAGTACAAA
TCGGGCAG

BS11240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9655-PA 1494 nes-RA 703..1494 808..17 3885 99.6 Minus
CG9655-PB 1494 nes-RB 703..1494 808..17 3885 99.6 Minus
CG9655-PC 1494 nes-RC 703..1494 808..17 3885 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
nes-RC 2231 CG9655-RC 841..1632 808..17 3915 99.6 Minus
nes-RB 1668 CG9655-RB 744..1535 808..17 3915 99.6 Minus
nes-RA 2377 CG9655-RA 857..1648 808..17 3915 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19258538..19258975 371..808 2145 99.3 Plus
3L 28110227 3L 19258011..19258364 17..370 1770 100 Plus
Blast to na_te.dros performed on 2015-02-09 04:15:11 has no hits.

BS11240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:54 Download gff for BS11240.3prime
Subject Subject Range Query Range Percent Splice Strand
nes-PA 703..1494 17..808 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:27 Download gff for BS11240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9655-PC 703..1494 17..808 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:02:38 Download gff for BS11240.3prime
Subject Subject Range Query Range Percent Splice Strand
nes-RA 857..1652 11..808 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:32:09 Download gff for BS11240.3prime
Subject Subject Range Query Range Percent Splice Strand
nes-RA 857..1652 11..808 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:32:09 Download gff for BS11240.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19258007..19258364 11..370 99 <- Plus
3L 19258538..19258975 371..808 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:02:38 Download gff for BS11240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19251107..19251464 11..370 99 <- Plus
arm_3L 19251638..19252075 371..808 99   Plus

BS11240.5prime Sequence

927 bp (769 high quality bases) assembled on 2006-04-18

> BS11240.5prime
GAAGTTATCAGTCGACATGGCGGAATTCGAGGAGGACTTGCCCCACAATG
GCCTGATGGACGGGATCGCCTCGGGAGTGGGCGTTCCCGTGGAGGCACTC
CGGCTGCTACTCACCATTCTGGCAGGTTATCCGGTGGCAGCATTATATCA
AAAATTTATTTCTGTTATTGCCGATAAAACAGTGCATCACATGTTCTTTG
CTGGATGCGGCGCTGGATTGTGTTACTTTAACTATGGGCTCGACACATAT
CACTCACTGATAGCCATCCTAACCACCTATTTCCTGGTACTCCTCCTGCG
AAAGAAGACGCAGATATTTCTGGCCATCAACTTCGTTTTCCATATGAGCT
ACCTGCTGCTGGGATATTTCTACACGTCCAGCAATGATTACGATATTCTG
TGGACGATGCCTCACTGCATTTTGGTTCTACGAATGATTGGCTATGGTTT
TGACATCACCGACGGCCTGAAAGAGGAGTCGGAATTGTCTAAGGACCAAA
AGGAAACTGCGCTGAAGAAACCGCCCTCTCTGCTGGAGCTCCTGGCCTTT
TCCTACTTCCCCAGTGGATTTTTGGTTGGACCGCAGTTCCCATTCCGCCG
TTACAAGGCCTTTGTCGATGGCGAATTCCGTCAGCACGAAGGAAATGTGG
AAGCTGGCGTTCGTCGCTTTGGAGCTGGTGCGTTCTATCTGATTGTGTGT
CAAGTGGGATTGAGATATCTGCCCGATTCGTACTTCCTCACTCCGGAGTT
TGCGCAAGTTTCATTCGTCAAGAGGATTTATTTACTCGGCTTCTGGGCCA
AATTCAGTCTGTACAAGTACATATCCTGCTGGCTGCTCACCGAGGGCGCC
CTTATTTGCATTGGTCTGACCTACAAGGGCGAGGACAAGAACGGACAGCC
CGATTGGTCGGGCTGCAGCAATGTGAA

BS11240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9655-PA 1494 nes-RA 1..911 17..927 4530 99.8 Plus
CG9655-PB 1494 nes-RB 1..911 17..927 4530 99.8 Plus
CG9655-PC 1494 nes-RC 1..911 17..927 4530 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
nes-RC 2231 CG9655-RC 138..1049 16..927 4545 99.9 Plus
nes-RB 1668 CG9655-RB 41..952 16..927 4545 99.9 Plus
nes-RA 2377 CG9655-RA 154..1065 16..927 4545 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19258767..19259571 927..123 4010 99.9 Minus
3L 28110227 3L 19260113..19260224 127..16 560 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:05:30 has no hits.

BS11240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:56 Download gff for BS11240.5prime
Subject Subject Range Query Range Percent Splice Strand
nes-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:28 Download gff for BS11240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9655-PC 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:02 Download gff for BS11240.5prime
Subject Subject Range Query Range Percent Splice Strand
nes-RA 154..1065 16..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:18 Download gff for BS11240.5prime
Subject Subject Range Query Range Percent Splice Strand
nes-RA 154..1065 16..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:18 Download gff for BS11240.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19258767..19259568 126..927 99 <- Minus
3L 19260115..19260224 16..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:02 Download gff for BS11240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19251867..19252668 126..927 99 <- Minus
arm_3L 19253215..19253324 16..125 100   Minus

BS11240.complete Sequence

1526 bp assembled on 2006-11-01

GenBank Submission: FJ636792

> BS11240.complete
GAAGTTATCAGTCGACATGGCGGAATTCGAGGAGGACTTGCCCCACAATG
GCCTGATGGACGGGATCGCCTCGGGAGTGGGCGTTCCCGTGGAGGCACTC
CGGCTGCTACTCACCATTCTGGCAGGTTATCCGGTGGCAGCATTATATCA
AAAATTTATTTCTGTTATTGCCGATAAAACAGTGCATCACATGTTCTTTG
CTGGATGCGGCGCTGGATTGTGTTACTTTAACTATGGGCTCGACACATAT
CACTCACTGATAGCCATCCTAACCACCTATTTCCTGGTACTCCTCCTGCG
AAAGAAGACGCAGATATTTCTGGCCATCAACTTCGTTTTCCATATGAGCT
ACCTGCTGCTGGGATATTTCTACACGTCCAGCAATGATTACGATATTCTG
TGGACGATGCCTCACTGCATTTTGGTTCTACGAATGATTGGCTATGGTTT
TGACATCACCGACGGCCTGAAAGAGGAGTCGGAATTGTCTAAGGACCAAA
AGGAAACTGCGCTGAAGAAACCGCCCTCTCTGCTGGAGCTCCTGGCCTTT
TCCTACTTCCCCAGTGGATTTTTGGTTGGACCGCAGTTCCCATTCCGCCG
TTACAAGGCCTTTGTCGATGGCGAATTCCGTCAGCACGAAGGAAATGTGG
AAGCTGGCGTTCGTCGCTTTGGAGCTGGTGCGTTCTATCTGATTGTGTGT
CAAGTGGGATTGAGATATCTGCCCGATTCGTACTTCCTCACTCCGGAGTT
TGCGCAAGTTTCATTCGTCAAGAGGATTTATTTACTCGGCTTCTGGGCCA
AATTCAGTCTGTACAAGTACATATCCTGCTGGCTGCTCACCGAGGGCGCC
CTTATTTGCATTGGTCTGACCTACAAGGGCGAGGACAAGAACGGACAGCC
CGATTGGTCGGGCTGCAGCAATGTGAAGCTAAAGCTGCTGGAGACTGGGA
ACACCATGGAGCACTACGTTCAAAGCTTCAATGTAAACACGAACCAATGG
GTTGGACAGTATATCTACAAGCGACTTAAGTTCCTCAACAACCGCACAAT
CAGCTATGGCGCGGCTTTGGGTTTCTTGGCGGTCTGGCACGGATACCACA
GCGGTTACTACATGACATTCCTCATGGAATACATGGTTGTGAGCACCGAA
AAACAAATAACCCGCTTCTACACCAAAGTGGTGTTACCCCAGTGGGGCCA
CATTCTGAACAACTCGGACATCTACAAGCTGCTTTATTTCATCACCCTCA
AGTCGTACAACGTTGTGTACATGGGCTGGTGCCTGACCGCATTTGTGTTT
CTGAAATACGAGCGCTGGATCGTGGTGTACGGAGCGGTCAGCTACTATGG
ATTCACTTTCCTAGTACTCTGGGCTGCCTTCTATCATACCTTCAATCACT
TTTTCCGGAGCAGTTCCCGGAAACTAGCTGGAGAGGATCAGAAGTTGCAG
GACAGCAACACGGACAAACTCGTAGAGGAAAAGAAACCAGAAGATAAGAA
GTCTGAGTAGAAGCTTTCTAGACCAT

BS11240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
nes-RC 1494 CG9655-PC 1..1494 17..1510 7455 99.9 Plus
nes-RB 1494 CG9655-PB 1..1494 17..1510 7455 99.9 Plus
nes-RA 1494 CG9655-PA 1..1494 17..1510 7455 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
nes-RC 2231 CG9655-RC 138..1632 16..1510 7460 99.9 Plus
nes-RB 1668 CG9655-RB 41..1535 16..1510 7460 99.9 Plus
nes-RA 2377 CG9655-RA 154..1648 16..1510 7460 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19258538..19259571 1156..123 5155 99.9 Minus
3L 28110227 3L 19258011..19258364 1510..1157 1770 100 Minus
3L 28110227 3L 19260113..19260224 127..16 560 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:12:45 has no hits.

BS11240.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:20 Download gff for BS11240.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RC 1..1494 17..1510 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:43 Download gff for BS11240.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RC 138..1636 16..1516 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:55 Download gff for BS11240.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RA 155..1648 17..1510 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:20 Download gff for BS11240.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RC 138..1636 16..1516 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:24 Download gff for BS11240.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RA 155..1648 17..1510 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:24 Download gff for BS11240.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19258011..19258364 1157..1510 100 <- Minus
3L 19258538..19259568 126..1156 99 <- Minus
3L 19260115..19260223 17..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:55 Download gff for BS11240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19251111..19251464 1157..1510 100 <- Minus
arm_3L 19251638..19252668 126..1156 99 <- Minus
arm_3L 19253215..19253323 17..125 100   Minus

BS11240.pep Sequence

Translation from 16 to 1509

> BS11240.pep
MAEFEEDLPHNGLMDGIASGVGVPVEALRLLLTILAGYPVAALYQKFISV
IADKTVHHMFFAGCGAGLCYFNYGLDTYHSLIAILTTYFLVLLLRKKTQI
FLAINFVFHMSYLLLGYFYTSSNDYDILWTMPHCILVLRMIGYGFDITDG
LKEESELSKDQKETALKKPPSLLELLAFSYFPSGFLVGPQFPFRRYKAFV
DGEFRQHEGNVEAGVRRFGAGAFYLIVCQVGLRYLPDSYFLTPEFAQVSF
VKRIYLLGFWAKFSLYKYISCWLLTEGALICIGLTYKGEDKNGQPDWSGC
SNVKLKLLETGNTMEHYVQSFNVNTNQWVGQYIYKRLKFLNNRTISYGAA
LGFLAVWHGYHSGYYMTFLMEYMVVSTEKQITRFYTKVVLPQWGHILNNS
DIYKLLYFITLKSYNVVYMGWCLTAFVFLKYERWIVVYGAVSYYGFTFLV
LWAAFYHTFNHFFRSSSRKLAGEDQKLQDSNTDKLVEEKKPEDKKSE*

BS11240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
nes-PC 497 CG9655-PC 1..497 1..497 2656 100 Plus
nes-PB 497 CG9655-PB 1..497 1..497 2656 100 Plus
nes-PA 497 CG9655-PA 1..497 1..497 2656 100 Plus
oys-PE 722 CG18445-PE 22..453 17..438 309 24.2 Plus
oys-PB 722 CG18445-PB 22..453 17..438 309 24.2 Plus