Clone Sequence Records
BS11240.3prime Sequence
808 bp (776 high quality bases) assembled on 2006-04-18
> BS11240.3prime
ATGGTCTAGAAAGCTTCTACTCAGACTTCTTATCTTCTGGTTTCTTTTCC
TCTACGAGTTTGTCCGTGTTGCTGTCCTGCAACTTCTGATCCTCTCCAGC
TAGTTTCCGGGAACTGCTCCGGAAAAAGTGATTGAAGGTATGATAGAAGG
CAGCCCAGAGTACTAGGAAAGTGAATCCATAGTAGCTGACCGCTCCGTAC
ACCACGATCCAGCGCTCGTATTTCAGAAACACAAATGCGGTCAGGCACCA
GCCCATGTACACAACGTTGTACGACTTGAGGGTGATGAAATAAAGCAGCT
TGTAGATGTCCGAGTTGTTCAGAATGTGGCCCCACTGGGGTAACACCACT
TTGGTGTAGAAGCGGGTTATTTGTTTTTCGGTGCTCACAACCATGTATTC
CATGAGGAATGTCATGTAGTAACCGCTGTGGTATCCGTGCCAGACCGCCA
AGAAACCCAAAGCCGCGCCATAGCTGATTGTGCGGTTGTTGAGGAACTTA
AGTCGCTTGTAGATATACTGTCCAACCCATTGGTTCGTGTTTACATTGAA
GCTTTGAACGTAGTGCTCCATGGTGTTCCCAGTCTCCAGCAGCTTTAGCT
TCACATTGCTGCAGCCCGACCAATCGGGCTGTCCGTTCTTGTCCTCGCCC
TTGTAGGTCAGACCAATGCAAATAAGGGCGCCCTCGGTGAGCAGCCAGCA
GGATATGTACTTGTACAGACTGAATTTGGCCCAAAAGCCGAGTAAATAAA
TCCTCTTGACGAATGAAACTTGCGCAAACTCCGGAGTGAGGAAGTACAAA
TCGGGCAG
BS11240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9655-PA | 1494 | nes-RA | 703..1494 | 808..17 | 3885 | 99.6 | Minus |
CG9655-PB | 1494 | nes-RB | 703..1494 | 808..17 | 3885 | 99.6 | Minus |
CG9655-PC | 1494 | nes-RC | 703..1494 | 808..17 | 3885 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nes-RC | 2231 | CG9655-RC | 841..1632 | 808..17 | 3915 | 99.6 | Minus |
nes-RB | 1668 | CG9655-RB | 744..1535 | 808..17 | 3915 | 99.6 | Minus |
nes-RA | 2377 | CG9655-RA | 857..1648 | 808..17 | 3915 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19258538..19258975 | 371..808 | 2145 | 99.3 | Plus |
3L | 28110227 | 3L | 19258011..19258364 | 17..370 | 1770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 04:15:11 has no hits.
BS11240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:54 Download gff for
BS11240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-PA | 703..1494 | 17..808 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:27 Download gff for
BS11240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9655-PC | 703..1494 | 17..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:02:38 Download gff for
BS11240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-RA | 857..1652 | 11..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:32:09 Download gff for
BS11240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-RA | 857..1652 | 11..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:32:09 Download gff for
BS11240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19258007..19258364 | 11..370 | 99 | <- | Plus |
3L | 19258538..19258975 | 371..808 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:02:38 Download gff for
BS11240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19251107..19251464 | 11..370 | 99 | <- | Plus |
arm_3L | 19251638..19252075 | 371..808 | 99 | | Plus |
BS11240.5prime Sequence
927 bp (769 high quality bases) assembled on 2006-04-18
> BS11240.5prime
GAAGTTATCAGTCGACATGGCGGAATTCGAGGAGGACTTGCCCCACAATG
GCCTGATGGACGGGATCGCCTCGGGAGTGGGCGTTCCCGTGGAGGCACTC
CGGCTGCTACTCACCATTCTGGCAGGTTATCCGGTGGCAGCATTATATCA
AAAATTTATTTCTGTTATTGCCGATAAAACAGTGCATCACATGTTCTTTG
CTGGATGCGGCGCTGGATTGTGTTACTTTAACTATGGGCTCGACACATAT
CACTCACTGATAGCCATCCTAACCACCTATTTCCTGGTACTCCTCCTGCG
AAAGAAGACGCAGATATTTCTGGCCATCAACTTCGTTTTCCATATGAGCT
ACCTGCTGCTGGGATATTTCTACACGTCCAGCAATGATTACGATATTCTG
TGGACGATGCCTCACTGCATTTTGGTTCTACGAATGATTGGCTATGGTTT
TGACATCACCGACGGCCTGAAAGAGGAGTCGGAATTGTCTAAGGACCAAA
AGGAAACTGCGCTGAAGAAACCGCCCTCTCTGCTGGAGCTCCTGGCCTTT
TCCTACTTCCCCAGTGGATTTTTGGTTGGACCGCAGTTCCCATTCCGCCG
TTACAAGGCCTTTGTCGATGGCGAATTCCGTCAGCACGAAGGAAATGTGG
AAGCTGGCGTTCGTCGCTTTGGAGCTGGTGCGTTCTATCTGATTGTGTGT
CAAGTGGGATTGAGATATCTGCCCGATTCGTACTTCCTCACTCCGGAGTT
TGCGCAAGTTTCATTCGTCAAGAGGATTTATTTACTCGGCTTCTGGGCCA
AATTCAGTCTGTACAAGTACATATCCTGCTGGCTGCTCACCGAGGGCGCC
CTTATTTGCATTGGTCTGACCTACAAGGGCGAGGACAAGAACGGACAGCC
CGATTGGTCGGGCTGCAGCAATGTGAA
BS11240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9655-PA | 1494 | nes-RA | 1..911 | 17..927 | 4530 | 99.8 | Plus |
CG9655-PB | 1494 | nes-RB | 1..911 | 17..927 | 4530 | 99.8 | Plus |
CG9655-PC | 1494 | nes-RC | 1..911 | 17..927 | 4530 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nes-RC | 2231 | CG9655-RC | 138..1049 | 16..927 | 4545 | 99.9 | Plus |
nes-RB | 1668 | CG9655-RB | 41..952 | 16..927 | 4545 | 99.9 | Plus |
nes-RA | 2377 | CG9655-RA | 154..1065 | 16..927 | 4545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19258767..19259571 | 927..123 | 4010 | 99.9 | Minus |
3L | 28110227 | 3L | 19260113..19260224 | 127..16 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:05:30 has no hits.
BS11240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:56 Download gff for
BS11240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:28 Download gff for
BS11240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9655-PC | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:02 Download gff for
BS11240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-RA | 154..1065 | 16..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:18 Download gff for
BS11240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-RA | 154..1065 | 16..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:18 Download gff for
BS11240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19258767..19259568 | 126..927 | 99 | <- | Minus |
3L | 19260115..19260224 | 16..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:02 Download gff for
BS11240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19251867..19252668 | 126..927 | 99 | <- | Minus |
arm_3L | 19253215..19253324 | 16..125 | 100 | | Minus |
BS11240.complete Sequence
1526 bp assembled on 2006-11-01
GenBank Submission: FJ636792
> BS11240.complete
GAAGTTATCAGTCGACATGGCGGAATTCGAGGAGGACTTGCCCCACAATG
GCCTGATGGACGGGATCGCCTCGGGAGTGGGCGTTCCCGTGGAGGCACTC
CGGCTGCTACTCACCATTCTGGCAGGTTATCCGGTGGCAGCATTATATCA
AAAATTTATTTCTGTTATTGCCGATAAAACAGTGCATCACATGTTCTTTG
CTGGATGCGGCGCTGGATTGTGTTACTTTAACTATGGGCTCGACACATAT
CACTCACTGATAGCCATCCTAACCACCTATTTCCTGGTACTCCTCCTGCG
AAAGAAGACGCAGATATTTCTGGCCATCAACTTCGTTTTCCATATGAGCT
ACCTGCTGCTGGGATATTTCTACACGTCCAGCAATGATTACGATATTCTG
TGGACGATGCCTCACTGCATTTTGGTTCTACGAATGATTGGCTATGGTTT
TGACATCACCGACGGCCTGAAAGAGGAGTCGGAATTGTCTAAGGACCAAA
AGGAAACTGCGCTGAAGAAACCGCCCTCTCTGCTGGAGCTCCTGGCCTTT
TCCTACTTCCCCAGTGGATTTTTGGTTGGACCGCAGTTCCCATTCCGCCG
TTACAAGGCCTTTGTCGATGGCGAATTCCGTCAGCACGAAGGAAATGTGG
AAGCTGGCGTTCGTCGCTTTGGAGCTGGTGCGTTCTATCTGATTGTGTGT
CAAGTGGGATTGAGATATCTGCCCGATTCGTACTTCCTCACTCCGGAGTT
TGCGCAAGTTTCATTCGTCAAGAGGATTTATTTACTCGGCTTCTGGGCCA
AATTCAGTCTGTACAAGTACATATCCTGCTGGCTGCTCACCGAGGGCGCC
CTTATTTGCATTGGTCTGACCTACAAGGGCGAGGACAAGAACGGACAGCC
CGATTGGTCGGGCTGCAGCAATGTGAAGCTAAAGCTGCTGGAGACTGGGA
ACACCATGGAGCACTACGTTCAAAGCTTCAATGTAAACACGAACCAATGG
GTTGGACAGTATATCTACAAGCGACTTAAGTTCCTCAACAACCGCACAAT
CAGCTATGGCGCGGCTTTGGGTTTCTTGGCGGTCTGGCACGGATACCACA
GCGGTTACTACATGACATTCCTCATGGAATACATGGTTGTGAGCACCGAA
AAACAAATAACCCGCTTCTACACCAAAGTGGTGTTACCCCAGTGGGGCCA
CATTCTGAACAACTCGGACATCTACAAGCTGCTTTATTTCATCACCCTCA
AGTCGTACAACGTTGTGTACATGGGCTGGTGCCTGACCGCATTTGTGTTT
CTGAAATACGAGCGCTGGATCGTGGTGTACGGAGCGGTCAGCTACTATGG
ATTCACTTTCCTAGTACTCTGGGCTGCCTTCTATCATACCTTCAATCACT
TTTTCCGGAGCAGTTCCCGGAAACTAGCTGGAGAGGATCAGAAGTTGCAG
GACAGCAACACGGACAAACTCGTAGAGGAAAAGAAACCAGAAGATAAGAA
GTCTGAGTAGAAGCTTTCTAGACCAT
BS11240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nes-RC | 1494 | CG9655-PC | 1..1494 | 17..1510 | 7455 | 99.9 | Plus |
nes-RB | 1494 | CG9655-PB | 1..1494 | 17..1510 | 7455 | 99.9 | Plus |
nes-RA | 1494 | CG9655-PA | 1..1494 | 17..1510 | 7455 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nes-RC | 2231 | CG9655-RC | 138..1632 | 16..1510 | 7460 | 99.9 | Plus |
nes-RB | 1668 | CG9655-RB | 41..1535 | 16..1510 | 7460 | 99.9 | Plus |
nes-RA | 2377 | CG9655-RA | 154..1648 | 16..1510 | 7460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19258538..19259571 | 1156..123 | 5155 | 99.9 | Minus |
3L | 28110227 | 3L | 19258011..19258364 | 1510..1157 | 1770 | 100 | Minus |
3L | 28110227 | 3L | 19260113..19260224 | 127..16 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:12:45 has no hits.
BS11240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:20 Download gff for
BS11240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-RC | 1..1494 | 17..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:43 Download gff for
BS11240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-RC | 138..1636 | 16..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:55 Download gff for
BS11240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-RA | 155..1648 | 17..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:20 Download gff for
BS11240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-RC | 138..1636 | 16..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:24 Download gff for
BS11240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nes-RA | 155..1648 | 17..1510 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:24 Download gff for
BS11240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19258011..19258364 | 1157..1510 | 100 | <- | Minus |
3L | 19258538..19259568 | 126..1156 | 99 | <- | Minus |
3L | 19260115..19260223 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:55 Download gff for
BS11240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19251111..19251464 | 1157..1510 | 100 | <- | Minus |
arm_3L | 19251638..19252668 | 126..1156 | 99 | <- | Minus |
arm_3L | 19253215..19253323 | 17..125 | 100 | | Minus |
BS11240.pep Sequence
Translation from 16 to 1509
> BS11240.pep
MAEFEEDLPHNGLMDGIASGVGVPVEALRLLLTILAGYPVAALYQKFISV
IADKTVHHMFFAGCGAGLCYFNYGLDTYHSLIAILTTYFLVLLLRKKTQI
FLAINFVFHMSYLLLGYFYTSSNDYDILWTMPHCILVLRMIGYGFDITDG
LKEESELSKDQKETALKKPPSLLELLAFSYFPSGFLVGPQFPFRRYKAFV
DGEFRQHEGNVEAGVRRFGAGAFYLIVCQVGLRYLPDSYFLTPEFAQVSF
VKRIYLLGFWAKFSLYKYISCWLLTEGALICIGLTYKGEDKNGQPDWSGC
SNVKLKLLETGNTMEHYVQSFNVNTNQWVGQYIYKRLKFLNNRTISYGAA
LGFLAVWHGYHSGYYMTFLMEYMVVSTEKQITRFYTKVVLPQWGHILNNS
DIYKLLYFITLKSYNVVYMGWCLTAFVFLKYERWIVVYGAVSYYGFTFLV
LWAAFYHTFNHFFRSSSRKLAGEDQKLQDSNTDKLVEEKKPEDKKSE*
BS11240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nes-PC | 497 | CG9655-PC | 1..497 | 1..497 | 2656 | 100 | Plus |
nes-PB | 497 | CG9655-PB | 1..497 | 1..497 | 2656 | 100 | Plus |
nes-PA | 497 | CG9655-PA | 1..497 | 1..497 | 2656 | 100 | Plus |
oys-PE | 722 | CG18445-PE | 22..453 | 17..438 | 309 | 24.2 | Plus |
oys-PB | 722 | CG18445-PB | 22..453 | 17..438 | 309 | 24.2 | Plus |