Clone Sequence Records
BS11242.3prime Sequence
606 bp (605 high quality bases) assembled on 2006-04-18
> BS11242.3prime
ATGGTCTAGAAAGCTTTCACAGGTAGTTGACATCATAGTTGCGCATCTTC
CATTTGAGTCGCCAGTATTGATTCCAAAATCCCACATCGATGATCCGTTC
GTGGAAGTTGAAGACGCCCACGTTGGTATATTCACAGATGGCCGGATAGG
TGCAGTCGTCCTCGTCGTATAGATCCACCCAAAGGATCGTGCAGATGCCG
AGAGAAAGGAGACGCAGTTTCTTTTGATTGATCGCCCTCTCCAAGGTTAG
CAGATAGTCGGCGGACACGGGATTCTGAAGTTCTACCGGCACTGTGATCA
TTCGATTTGTGGCACCCCTTAGCAGAGTCATAAAGGCCTCCTCGCCGGGA
TTCTTCAGATTGGCTTGGTACATGAACAGCATTCCCGTTCCATAGAGAAG
CGCCTTTTTCGGCTTCGTGTAGGATTCTCGCACAACACCCACTGCCACCT
CTGTGTAGTCCCTGACCAGGCCGTTCCAATACTGCACCCACTTCTCCACG
AACGTGCCCTTGAAGCGCTCCGGCATCTGAATTCGATCGGTCAATCTCTG
ACGCAGTGCCGTTATACGACCACCCACGCGGAGGAACTGCATGTCGACTG
ATAACT
BS11242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14270-PA | 576 | CG14270-RA | 1..576 | 592..17 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14270-RA | 774 | CG14270-RA | 95..670 | 592..17 | 2880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 18:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3484709..3485284 | 17..592 | 2880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 18:07:44 has no hits.
BS11242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:57 Download gff for
BS11242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:29 Download gff for
BS11242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:40:33 Download gff for
BS11242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-RA | 89..670 | 17..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:06:59 Download gff for
BS11242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-RA | 89..670 | 17..600 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:06:59 Download gff for
BS11242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3484709..3485290 | 17..600 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:40:33 Download gff for
BS11242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3378742..3379323 | 17..600 | 99 | | Plus |
BS11242.5prime Sequence
606 bp (605 high quality bases) assembled on 2006-04-18
> BS11242.5prime
GAAGTTATCAGTCGACATGCAGTTCCTCCGCGTGGGTGGTCGTATAACGG
CACTGCGTCAGAGATTGACCGATCGAATTCAGATGCCGGAGCGCTTCAAG
GGCACGTTCGTGGAGAAGTGGGTGCAGTATTGGAACGGCCTGGTCAGGGA
CTACACAGAGGTGGCAGTGGGTGTTGTGCGAGAATCCTACACGAAGCCGA
AAAAGGCGCTTCTCTATGGAACGGGAATGCTGTTCATGTACCAAGCCAAT
CTGAAGAATCCCGGCGAGGAGGCCTTTATGACTCTGCTAAGGGGTGCCAC
AAATCGAATGATCACAGTGCCGGTAGAACTTCAGAATCCCGTGTCCGCCG
ACTATCTGCTAACCTTGGAGAGGGCGATCAATCAAAAGAAACTGCGTCTC
CTTTCTCTCGGCATCTGCACGATCCTTTGGGTGGATCTATACGACGAGGA
CGACTGCACCTATCCGGCCATCTGTGAATATACCAACGTGGGCGTCTTCA
ACTTCCACGAACGGATCATCGATGTGGGATTTTGGAATCAATACTGGCGA
CTCAAATGGAAGATGCGCAACTATGATGTCAACTACCTGTGAAAGCTTTC
TAGACC
BS11242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14270-PA | 576 | CG14270-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14270-RA | 774 | CG14270-RA | 95..670 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3484709..3485284 | 592..17 | 2880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:16:52 has no hits.
BS11242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:02:58 Download gff for
BS11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:31 Download gff for
BS11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:52:31 Download gff for
BS11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-RA | 89..670 | 9..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:22 Download gff for
BS11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-RA | 89..670 | 9..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:22 Download gff for
BS11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3484709..3485290 | 9..592 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:52:31 Download gff for
BS11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3378742..3379323 | 9..592 | 99 | | Minus |
BS11242.complete Sequence
608 bp assembled on 2006-11-01
GenBank Submission: FJ636793
> BS11242.complete
GAAGTTATCAGTCGACATGCAGTTCCTCCGCGTGGGTGGTCGTATAACGG
CACTGCGTCAGAGATTGACCGATCGAATTCAGATGCCGGAGCGCTTCAAG
GGCACGTTCGTGGAGAAGTGGGTGCAGTATTGGAACGGCCTGGTCAGGGA
CTACACAGAGGTGGCAGTGGGTGTTGTGCGAGAATCCTACACGAAGCCGA
AAAAGGCGCTTCTCTATGGAACGGGAATGCTGTTCATGTACCAAGCCAAT
CTGAAGAATCCCGGCGAGGAGGCCTTTATGACTCTGCTAAGGGGTGCCAC
AAATCGAATGATCACAGTGCCGGTAGAACTTCAGAATCCCGTGTCCGCCG
ACTATCTGCTAACCTTGGAGAGGGCGATCAATCAAAAGAAACTGCGTCTC
CTTTCTCTCGGCATCTGCACGATCCTTTGGGTGGATCTATACGACGAGGA
CGACTGCACCTATCCGGCCATCTGTGAATATACCAACGTGGGCGTCTTCA
ACTTCCACGAACGGATCATCGATGTGGGATTTTGGAATCAATACTGGCGA
CTCAAATGGAAGATGCGCAACTATGATGTCAACTACCTGTGAAAGCTTTC
TAGACCAT
BS11242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14270-RA | 576 | CG14270-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14270-RA | 774 | CG14270-RA | 95..670 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3484709..3485284 | 592..17 | 2880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:27:19 has no hits.
BS11242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:38 Download gff for
BS11242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:05 Download gff for
BS11242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-RA | 85..666 | 9..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:17 Download gff for
BS11242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-RA | 95..669 | 17..591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:38 Download gff for
BS11242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-RA | 85..666 | 9..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:44 Download gff for
BS11242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14270-RA | 95..669 | 17..591 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:44 Download gff for
BS11242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3484710..3485284 | 17..591 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:17 Download gff for
BS11242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3378743..3379317 | 17..591 | 100 | | Minus |
BS11242.pep Sequence
Translation from 16 to 591
> BS11242.pep
MQFLRVGGRITALRQRLTDRIQMPERFKGTFVEKWVQYWNGLVRDYTEVA
VGVVRESYTKPKKALLYGTGMLFMYQANLKNPGEEAFMTLLRGATNRMIT
VPVELQNPVSADYLLTLERAINQKKLRLLSLGICTILWVDLYDEDDCTYP
AICEYTNVGVFNFHERIIDVGFWNQYWRLKWKMRNYDVNYL*
BS11242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14270-PA | 191 | CG14270-PA | 1..191 | 1..191 | 1023 | 100 | Plus |
