Clone Sequence Records
BS11246.3prime Sequence
886 bp (787 high quality bases) assembled on 2006-04-18
> BS11246.3prime
ATGGTCTAGAAAGCTTCTACAACTTGCTCTTAACCTGGCGCAGGATGGGG
AACTTGTCGTGGCCAGTGCAGCCGCCGCGGAAGTCATCGAAGCTCAGATC
GACAACAGCAATGCCGCCGAGACCCTCGCGCTTAACATACTCCGCCTTGA
TGGCCGCCGTATCGGGATCCTCGTAGCCCACCCAGACTCCGTTTTCACCG
CTGTCGTCGGCGGAGCGGTAGGCATAGCTTCCAAAGCGCTTGGTCGGATC
ACCAACCTTTCGCAGCGGACCATCGGCGCCCTTCAGATGCTGATTGGCGG
GATTTGGGAGCTTGGCGCACACCTCTGGCCAGCTAAGAAGTCCGGGTATC
TGGGTCTGGGTTCCGGCAGGAGCCACACCATCAGCCTCGGCAACCGGTGG
AAGTCCAGTCAGTCCCGAATCCTTGGTCAATTTCCAGGCACGTCCATAGG
TGGCAATGCCCACGTTAATCTTAGCGGCCGGAGCACGGTTTCCGGTCCAG
TATTTCACCTGGTAGTTGACATTGAACTCCGGATTGCGCTCGTTCAGCTC
GTAGATCGGTGCCGGGAAGTCGGCCACCTCGTTGTTGCGCTCGGGGGTCT
GGAAGTCGTAGGTGTGCAGGTTCACGTAGTCCAAGTTATTGATAATAGCG
GGCACATCGAAGAACAGCGAAGAGTTCACATTGGGCAGGACACTGAGACC
CAGGATGTAGCCATCGGGACGGAAGGCGTTCTTCAGTTCGCGAACCAGGG
CGGTGAAGGCCTCCTTGTGCTCCTCGGCCTTCTCGTCGACGACATGATCA
CCGCTGAAGATCTTCTTGAATCCCTTCCAGAACTTGCCAATGCTGCCGTG
CACCTTCTTTGGCTTATTCTTGGGGAACTGCCAGCC
BS11246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1780-PA | 1329 | Idgf4-RA | 460..1329 | 886..17 | 4350 | 100 | Minus |
| CG1780-PB | 1329 | Idgf4-RB | 460..1329 | 886..17 | 4350 | 100 | Minus |
| CG5210-PA | 1359 | Chit-RA | 489..525 | 884..848 | 160 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idgf4-RC | 1807 | CG1780-RC | 503..1373 | 886..16 | 4355 | 100 | Minus |
| Idgf4-RB | 1541 | CG1780-RB | 530..1400 | 886..16 | 4355 | 100 | Minus |
| Idgf4-RA | 1514 | CG1780-RA | 503..1373 | 886..16 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9928407..9929057 | 16..666 | 3255 | 100 | Plus |
| X | 23542271 | X | 9929172..9929391 | 667..886 | 1100 | 100 | Plus |
| 2R | 25286936 | 2R | 16692706..16692873 | 884..717 | 360 | 81 | Minus |
| 2R | 25286936 | 2R | 18394919..18395040 | 265..144 | 190 | 77 | Minus |
Blast to na_te.dros performed on 2015-01-31 20:28:56 has no hits.
BS11246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:06 Download gff for
BS11246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-PA | 460..1329 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:41 Download gff for
BS11246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1780-PB | 460..1329 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:40:50 Download gff for
BS11246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RA | 534..1410 | 8..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:53:42 Download gff for
BS11246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RA | 503..1379 | 8..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:53:42 Download gff for
BS11246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9928401..9929057 | 8..666 | 99 | <- | Plus |
| X | 9929172..9929391 | 667..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:40:50 Download gff for
BS11246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9822434..9823090 | 8..666 | 99 | <- | Plus |
| arm_X | 9823205..9823424 | 667..886 | 100 | | Plus |
BS11246.5prime Sequence
893 bp (799 high quality bases) assembled on 2006-04-18
> BS11246.5prime
GAAGTTATCAGTCGACATGAAGCTCTACGCCCTGTTCTCCCTTCTGGTGG
GATCTTTGGCCATTGGTCAGATTTCCGCCGCCGGATCTCATCATCTACTT
TGTTACTATGACGGCAACAGTTTTGTCCGCGAGGGCCTCTCCAAGCTGAT
CCTAACCGATCTGGAGCCCGCCCTGCAGTACTGCACCCATCTGGTCTACG
GATATGCCGGCATTAATCCCTCGAGCAACAAGCTGGTCAGCAACAATGAG
AAATTGGACCTGGATCTGGGCAGCAGCCTGTTCCGCCAGGTGACCGGATT
GAAGCGCAAGTACCCAGCCCTCAAGGTCCTGCTTAGCGTGGGTGGCGACA
AGGACACCGTGGATCCAGAGAACAACAAGTATCTGACCCTGCTGGAGAGC
AGCAATGCCAGGATTCCGTTCATCAACAGTGCTCACTCGCTGGTGAAGAC
CTACGGTTTCGATGGCCTCGATCTCGGCTGGCAGTTCCCCAAGAATAAGC
CAAAGAAGGTGCACGGCAGCATTGGCAAGTTCTGGAAGGGATTCAAGAAG
ATCTTCAGCGGTGATCATGTCGTCGACGAGAAGGCCGAGGAGCACAAGGA
GGCCTTCACCGCCCTGGTTCGCGAACTGAAGAACGCCTTCCGTCCCGATG
GCTACATCCTGGGTCTCAGTGTCCTGCCCAATGTGAACTCTTCGCTGTTC
TTCGATGTGCCCGCTATTATCAATAACTTGGACTACGTGAACCTGCACAC
CTACGACTTCCAGACCCCCGAGCGCAACAACGAGGTGGCCGACTTCCCGG
CACCGATCTACGAGCTGAACGAGCGCAATCCGGAGTTCAATGTCAACTAC
CAGGTGAAATACTGGACCGGAAACCGTGCTCCGGCCGCTAAGA
BS11246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1780-PA | 1329 | Idgf4-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
| CG1780-PB | 1329 | Idgf4-RB | 1..877 | 17..893 | 4385 | 100 | Plus |
| CG5210-PA | 1359 | Chit-RA | 446..525 | 435..514 | 225 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idgf4-RC | 1807 | CG1780-RC | 44..920 | 17..893 | 4385 | 100 | Plus |
| Idgf4-RB | 1541 | CG1780-RB | 71..947 | 17..893 | 4385 | 100 | Plus |
| Idgf4-RA | 1514 | CG1780-RA | 44..920 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9929172..9929733 | 695..134 | 2810 | 100 | Minus |
| X | 23542271 | X | 9928860..9929057 | 893..696 | 990 | 100 | Minus |
| X | 23542271 | X | 9930354..9930472 | 135..17 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 16692663..16692873 | 435..645 | 485 | 82 | Plus |
| 2L | 23513712 | 2L | 16449489..16449564 | 441..516 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:55:19 has no hits.
BS11246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:07 Download gff for
BS11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:44 Download gff for
BS11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1780-PB | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:03:11 Download gff for
BS11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RA | 67..950 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:47 Download gff for
BS11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RA | 36..919 | 9..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:47 Download gff for
BS11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9928861..9929057 | 696..892 | 100 | <- | Minus |
| X | 9929172..9929732 | 135..695 | 100 | <- | Minus |
| X | 9930355..9930477 | 9..134 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:03:11 Download gff for
BS11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9822894..9823090 | 696..892 | 100 | <- | Minus |
| arm_X | 9823205..9823765 | 135..695 | 100 | <- | Minus |
| arm_X | 9824388..9824510 | 9..134 | 96 | | Minus |
BS11246.complete Sequence
1361 bp assembled on 2006-11-01
GenBank Submission: FJ636794
> BS11246.complete
GAAGTTATCAGTCGACATGAAGCTCTACGCCCTGTTCTCCCTTCTGGTGG
GATCTTTGGCCATTGGTCAGATTTCCGCCGCCGGATCTCATCATCTACTT
TGTTACTATGACGGCAACAGTTTTGTCCGCGAGGGCCTCTCCAAGCTGAT
CCTAACCGATCTGGAGCCCGCCCTGCAGTACTGCACCCATCTGGTCTACG
GATATGCCGGCATTAATCCCTCGAGCAACAAGCTGGTCAGCAACAATGAG
AAATTGGACCTGGATCTGGGCAGCAGCCTGTTCCGCCAGGTGACCGGATT
GAAGCGCAAGTACCCAGCCCTCAAGGTCCTGCTTAGCGTGGGTGGCGACA
AGGACACCGTGGATCCAGAGAACAACAAGTATCTGACCCTGCTGGAGAGC
AGCAATGCCAGGATTCCGTTCATCAACAGTGCTCACTCGCTGGTGAAGAC
CTACGGTTTCGATGGCCTCGATCTCGGCTGGCAGTTCCCCAAGAATAAGC
CAAAGAAGGTGCACGGCAGCATTGGCAAGTTCTGGAAGGGATTCAAGAAG
ATCTTCAGCGGTGATCATGTCGTCGACGAGAAGGCCGAGGAGCACAAGGA
GGCCTTCACCGCCCTGGTTCGCGAACTGAAGAACGCCTTCCGTCCCGATG
GCTACATCCTGGGTCTCAGTGTCCTGCCCAATGTGAACTCTTCGCTGTTC
TTCGATGTGCCCGCTATTATCAATAACTTGGACTACGTGAACCTGCACAC
CTACGACTTCCAGACCCCCGAGCGCAACAACGAGGTGGCCGACTTCCCGG
CACCGATCTACGAGCTGAACGAGCGCAATCCGGAGTTCAATGTCAACTAC
CAGGTGAAATACTGGACCGGAAACCGTGCTCCGGCCGCTAAGATTAACGT
GGGCATTGCCACCTATGGACGTGCCTGGAAATTGACCAAGGATTCGGGAC
TGACTGGACTTCCACCGGTTGCCGAGGCTGATGGTGTGGCTCCTGCCGGA
ACCCAGACCCAGATACCCGGACTTCTTAGCTGGCCAGAGGTGTGCGCCAA
GCTCCCAAATCCCGCCAATCAGCATCTGAAGGGCGCCGATGGTCCGCTGC
GAAAGGTTGGTGATCCGACCAAGCGCTTTGGAAGCTATGCCTACCGCTCC
GCCGACGACAGCGGTGAAAACGGAGTCTGGGTGGGCTACGAGGATCCCGA
TACGGCGGCCATCAAGGCGGAGTATGTTAAGCGCGAGGGTCTCGGCGGCA
TTGCTGTTGTCGATCTGAGCTTCGATGACTTCCGCGGCGGCTGCACTGGC
CACGACAAGTTCCCCATCCTGCGCCAGGTTAAGAGCAAGTTGTAGAAGCT
TTCTAGACCAT
BS11246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idgf4-RC | 1329 | CG1780-PC | 1..1329 | 17..1345 | 6645 | 100 | Plus |
| Idgf4-RB | 1329 | CG1780-PB | 1..1329 | 17..1345 | 6645 | 100 | Plus |
| Idgf4-RA | 1329 | CG1780-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idgf4-RC | 1807 | CG1780-RC | 44..1373 | 17..1346 | 6650 | 100 | Plus |
| Idgf4-RB | 1541 | CG1780-RB | 71..1400 | 17..1346 | 6650 | 100 | Plus |
| Idgf4-RA | 1514 | CG1780-RA | 44..1373 | 17..1346 | 6650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9928407..9929057 | 1346..696 | 3255 | 100 | Minus |
| X | 23542271 | X | 9929172..9929733 | 695..134 | 2810 | 100 | Minus |
| X | 23542271 | X | 9930354..9930472 | 135..17 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 16692663..16692873 | 435..645 | 485 | 82 | Plus |
| 2R | 25286936 | 2R | 18394919..18395040 | 1097..1218 | 190 | 77 | Plus |
| 2L | 23513712 | 2L | 16449489..16449564 | 441..516 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:04 has no hits.
BS11246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:04 Download gff for
BS11246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RB | 1..1329 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:22 Download gff for
BS11246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RB | 97..1437 | 12..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:10 Download gff for
BS11246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RA | 75..1403 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:04 Download gff for
BS11246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RB | 97..1437 | 12..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:46 Download gff for
BS11246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RA | 44..1372 | 17..1345 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:46 Download gff for
BS11246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9928408..9929057 | 696..1345 | 100 | <- | Minus |
| X | 9929172..9929732 | 135..695 | 100 | <- | Minus |
| X | 9930355..9930472 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:10 Download gff for
BS11246.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9822441..9823090 | 696..1345 | 100 | <- | Minus |
| arm_X | 9823205..9823765 | 135..695 | 100 | <- | Minus |
| arm_X | 9824388..9824505 | 17..134 | 100 | | Minus |
BS11246.pep Sequence
Translation from 16 to 1344
> BS11246.pep
MKLYALFSLLVGSLAIGQISAAGSHHLLCYYDGNSFVREGLSKLILTDLE
PALQYCTHLVYGYAGINPSSNKLVSNNEKLDLDLGSSLFRQVTGLKRKYP
ALKVLLSVGGDKDTVDPENNKYLTLLESSNARIPFINSAHSLVKTYGFDG
LDLGWQFPKNKPKKVHGSIGKFWKGFKKIFSGDHVVDEKAEEHKEAFTAL
VRELKNAFRPDGYILGLSVLPNVNSSLFFDVPAIINNLDYVNLHTYDFQT
PERNNEVADFPAPIYELNERNPEFNVNYQVKYWTGNRAPAAKINVGIATY
GRAWKLTKDSGLTGLPPVAEADGVAPAGTQTQIPGLLSWPEVCAKLPNPA
NQHLKGADGPLRKVGDPTKRFGSYAYRSADDSGENGVWVGYEDPDTAAIK
AEYVKREGLGGIAVVDLSFDDFRGGCTGHDKFPILRQVKSKL*
BS11246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idgf4-PC | 442 | CG1780-PC | 1..442 | 1..442 | 2340 | 100 | Plus |
| Idgf4-PB | 442 | CG1780-PB | 1..442 | 1..442 | 2340 | 100 | Plus |
| Idgf4-PA | 442 | CG1780-PA | 1..442 | 1..442 | 2340 | 100 | Plus |
| CG5210-PB | 452 | CG5210-PB | 3..450 | 1..442 | 1528 | 63.7 | Plus |
| CG5210-PA | 452 | CG5210-PA | 3..450 | 1..442 | 1528 | 63.7 | Plus |
