Clone BS11247 Report

Search the DGRC for BS11247

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG6830-RA
Protein status:BS11247.pep: full length peptide match
Sequenced Size:2708

Clone Sequence Records

BS11247.3prime Sequence

876 bp (782 high quality bases) assembled on 2006-04-18

> BS11247.3prime
ATGGTCTAGAAAGCTTTTATTGGGAATGTCCGTTGGCAAAATTATCAAGC
AGTCCTCGTCTATTTATCCATGGCATGACACGCTCTATATTGGCCCTATA
ACGTTCGTTGCTAAACATTGCCTCCCTCAGGGATTTGCCATTCTCTTCAT
TTCCCAAAAAGCTATCAGTGGTAAAGTCATCGGTTGTCTTGTTAAGACAC
ATCGACAAGGTAGTGAGCACAGTTCCAGCAGCAAAAATGGGGTGCTGTAT
CAGAATGGCGTGCAGTTCCTTTAGCGAGGGAATAAATCCGTTGTAGTTCA
ACAGCTTGGCGTGCTCCTTCATGTTTTGATGATACCATCGGATAAGGTAG
TCAAACTGATCGACTTTGATGTCCAGTTGAGTGGAGCTCATTATGAAGTA
ATACAGATCCTGGGCAGGATTTCCATACTTCGTGACTTGGTGATCCAACA
GGAGGGTTTCCTTGACGCGACCATCTGATTCGTATTGGAACATGATGTTA
TTTATCCAGGCATCACCATGATTGAGCACATTAAACGCTTGTTCATTTAT
TTTGGCATCTTCAAGTATTCTGTCGACATACGTATCCAAGATCTCTGGCA
TTTTGTGCAAGTACTCATCCACACCGTCAAACTTGCTCACTTCTTCTATA
AAGGATTTCTTAGTGTTAACAAACATACCCTTAAATATAGGTGCCGTTTG
CTCTGTAAAAATGCCATTATTGTATTTGGGCGAATAGGGTCCATTTAGTT
CCTTGTACTTCAGAGAGGCTGCATGCCACTGGGCCAATTTCTTTAACGTG
CACTTGGAATGCTCCAAGTCCATTCCAATCATGCGAATCGACCATCTTGA
AGCCACTCGGCTGCAGGTTCTCCAAA

BS11247.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-PA 2676 CG6830-RA 1857..2676 836..17 4100 100 Minus
CG6834-PA 2688 CG6834-RA 2170..2252 562..480 215 90.3 Minus
CG6830-PA 2676 CG6830-RA 1818..1857 876..837 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 02:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-RA 2781 CG6830-RA 1907..2766 876..16 4280 99.9 Minus
CG6834-RA 2886 CG6834-RA 2249..2568 562..243 580 79.1 Minus
CG6834-RA 2886 CG6834-RA 1938..2070 874..741 180 76.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 02:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11681263..11681630 232..599 1840 100 Plus
3R 32079331 3R 11681685..11681961 599..876 1340 99.6 Plus
3R 32079331 3R 11680987..11681203 16..232 1085 100 Plus
3R 32079331 3R 11685047..11685366 243..562 580 78.8 Plus
Blast to na_te.dros performed on 2015-02-07 02:24:32 has no hits.

BS11247.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:08 Download gff for BS11247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-PA 1821..2676 17..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:45 Download gff for BS11247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-PA 1821..2676 17..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:26:12 Download gff for BS11247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 1910..2781 4..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:04:49 Download gff for BS11247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 1910..2781 4..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:04:49 Download gff for BS11247.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11680972..11681202 4..231 97 <- Plus
3R 11681263..11681629 232..598 100 <- Plus
3R 11681685..11681958 599..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:26:12 Download gff for BS11247.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7506694..7506924 4..231 97 <- Plus
arm_3R 7506985..7507351 232..598 100 <- Plus
arm_3R 7507407..7507680 599..873 99   Plus

BS11247.5prime Sequence

897 bp (827 high quality bases) assembled on 2006-04-18

> BS11247.5prime
GAAGTTATCAGTCGACATGGGATTGAGAAATTCCAAGGAAAAGCAGAGCA
ATGAAGTGAAAACTTCGAAGCAAGCACCAAAGGCGCAGGTGAACCCTGAA
CCCCCAGCTCCACCCAACAAACCGGAACCCGAGGTGGATCACAGTGATTT
GGTGCCCAAGTGGCTGAATCAAACGCAATTTGAGGAATTACTCGCCGCCG
ATGTGGATCAGTTCTCCAAGATAGTGGGCTTCCGGGTGAAGCCAGCGATG
GCACCGGGAGAAAACTATGCCACTCTAATGCTCAGGATCAGCATAGATGT
GGAGCTCACTGACAAGAGCACTAAGCTGGTCTCCTTCATGATGAAAGTGC
CACACGATACTCCGCAAATGGAACAAATGATGAGCATGGCCAACTTCTTT
ACCAGCGAGAACGCAGCCTACACTGAGATTCTACCGAAAATGGAGGAGCT
CTATAAGGCCAAGGGTCTGGACATCAAATTCGCTCCGCGAGCATTCAAAC
TGGACGCCACCAAGGAGCCCAAGGTGGCTAATACGGTGCTGATGCACGAT
CTCGGTCAGAATGGTTTCAAAAACATAAACCGACTGGAGTGCCTGAACCT
GGAGCAAACCAAGTTCGCATTGACCAGACTAGCACAGTTCCATGCAGCGG
GAGCGACAATGGTCCAGGTGCATGGACCCTATCCCGACATATTCGTAAAC
GGCGTGATGGGAAACAACAAGGAAGCTATTATTGCATTCATGGAGGGCAT
GTTGGCATCCTTTAGAACGTCGTTTATGGCCAATCTGGATAAGTTCAAGA
ACGGAGAAGAATATCGGGAGAAGCTTGAAAAAGCTCTAGCTGGCCTAACT
ATGGAGTTCATGAAACTTGGTATCGTCGATCCCAACGAGTTTAATGC

BS11247.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-PA 2676 CG6830-RA 1..881 17..897 4405 100 Plus
CG6834-PA 2688 CG6834-RA 194..302 165..273 445 96.3 Plus
CG6834-PA 2688 CG6834-RA 307..369 278..340 215 93.6 Plus
CG6834-PA 2688 CG6834-RA 394..440 365..411 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-RA 2781 CG6830-RA 90..970 17..897 4405 100 Plus
CG6834-RA 2886 CG6834-RA 255..939 147..831 1400 80.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11683150..11683666 827..311 2585 100 Minus
3R 32079331 3R 11683959..11684253 311..17 1475 100 Minus
3R 32079331 3R 11686905..11687426 832..311 765 76.4 Minus
3R 32079331 3R 11687715..11687879 311..147 630 92.1 Minus
3R 32079331 3R 11683018..11683088 897..827 355 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:23:44 has no hits.

BS11247.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:09 Download gff for BS11247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-PA 1..881 17..897 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:46 Download gff for BS11247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-PA 1..881 17..897 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:23:57 Download gff for BS11247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 90..970 17..897 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:15 Download gff for BS11247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 90..970 17..897 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:15 Download gff for BS11247.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11683018..11683088 827..897 100 <- Minus
3R 11683151..11683665 312..826 100 <- Minus
3R 11683959..11684253 17..311 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:23:57 Download gff for BS11247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7508740..7508810 827..897 100 <- Minus
arm_3R 7508873..7509387 312..826 100 <- Minus
arm_3R 7509681..7509975 17..311 100   Minus

BS11247.complete Sequence

2708 bp assembled on 2009-12-07

GenBank Submission: KX803414

> BS11247.complete
GAAGTTATCAGTCGACATGGGATTGAGAAATTCCAAGGAAAAGCAGAGCA
ATGAAGTGAAAACTTCGAAGCAAGCACCAAAGGCGCAGGTGAACCCTGAA
CCCCCAGCTCCACCCAACAAACCGGAACCCGAGGTGGATCACAGTGATTT
GGTGCCCAAGTGGCTGAATCAAACGCAATTTGAGGAATTACTCGCCGCCG
ATGTGGATCAGTTCTCCAAGATAGTGGGCTTCCGGGTGAAGCCAGCGATG
GCACCGGGAGAAAACTATGCCACTCTAATGCTCAGGATCAGCATAGATGT
GGAGCTCACTGACAAGAGCACTAAGCTGGTCTCCTTCATGATGAAAGTGC
CACACGATACTCCGCAAATGGAACAAATGATGAGCATGGCCAACTTCTTT
ACCAGCGAGAACGCAGCCTACACTGAGATTCTACCGAAAATGGAGGAGCT
CTATAAGGCCAAGGGTCTGGACATCAAATTCGCTCCGCGAGCATTCAAAC
TGGACGCCACCAAGGAGCCCAAGGTGGCTAATACGGTGCTGATGCACGAT
CTCGGTCAGAATGGTTTCAAAAACATAAACCGACTGGAGTGCCTGAACCT
GGAGCAAACCAAGTTCGCATTGACCAGACTAGCACAGTTCCATGCAGCGG
GAGCGACAATGGTCCAGGTGCATGGACCCTATCCCGACATATTCGTAAAC
GGCGTGATGGGAAACAACAAGGAAGCTATTATTGCATTCATGGAGGGCAT
GTTGGCATCCTTTAGAACGTCGTTTATGGCCAATCTGGATAAGTTCAAGA
ACGGAGAAGAATATCGGGAGAAGCTTGAAAAAGCTCTAGCTGGCCTAACT
ATGGAGTTCATGAAACTTGGTATCGTCGATCCCAACGAGTTTAATGCGCT
AAACCATGGCGATTGCTGGATGAATAATCTTCTGTTCAAGATGAACTCCA
GCGGGGACTTGGAGGATATGGTCTTTGTCGATTTCCAGAATCCCAAATAC
GGCTCTCCTGCCATGGATCTGCTCTACTTCATCATTTCCTCGGTTCAAAT
TGATTACAAGCTGAGCCATTTTGACTTTTTCATCAGGCATTACCAAGAAG
CACTGGTTAAGCACTTGGGCATTTTGGGATTCACTGGCCGAAAGCCATCG
CTGAGGGAATTGCACCGAACGCTCATCAAATACGGCGGATGGGTGCTATT
CCCAACCATCTCCGTGCTGCCATTGGTTCTCTTGGACCCCACTCAGTCGG
CCACATTCGATAATTTTATGTCGGACTCTGCTGATGGGGTTAGTTTCAGG
GGTAGTTTGTATGCCAACAAACGTTGTCAAGAATACATCGAACGCATTCT
GCCTTGGTTGGATAATAGAGGCTTCTTGGAGGTCAGCACTGACCCATTGC
CACCCGAACTGCTGGCAGCTTTGAAGCCACAGCAGCCACAGCCGGAGAAT
ACGGATCAGATCCCGGACTGGCTAAATATTGACGATTTCAAGGAAATCAT
TTTATCCGCGGAACCAAATTTCGAAAAGATCTTAAGCAGTACTTCAAAGT
TGGCGACGAAACCTGGCGACAACTTTGCTTCCAAGCTGCTGAAGGTCGAA
ATCGAGGCGCAGTTAAAAGACAATAGCGTGAAGACCTTCTCGTACATCCT
GAAAGTCCACAGCGACAATGACGCAATCAACTTCTCCGACTTTAACCTGT
TTCCAAAAGAGATAGAGGTTTACAGCACATATGTGCCCGCCTTCGAGCGT
TTCTATAAGGATGTTGGCCTACCAGTCACTTTTAGTCCGAAGTCCTTCCG
GCTCAGCAAGGACGTCAGCAAGGAGTACCTGCTTTTGGAGAACCTGCAGC
CGAGTGGCTTCAAGATGGTCGATCGCATGATTGGAATGGACTTGGAGCAT
TCCAAGTGCACGTTAAAGAAATTGGCCCAGTGGCATGCAGCCTCTCTGAA
GTACAAGGAACTAAATGGACCCTATTCGCCCAAATACAATAATGGCATTT
TTACAGAGCAAACGGCACCTATATTTAAGGGTATGTTTGTTAACACTAAG
AAATCCTTTATAGAAGAAGTGAGCAAGTTTGACGGTGTGGATGAGTACTT
GCACAAAATGCCAGAGATCTTGGATACGTATGTCGACAGAATACTTGAAG
ATGCCAAAATAAATGAACAAGCGTTTAATGTGCTCAATCATGGTGATGCC
TGGATAAATAACATCATGTTCCAATACGAATCAGATGGTCGCGTCAAGGA
AACCCTCCTGTTGGATCACCAAGTCACGAAGTATGGAAATCCTGCCCAGG
ATCTGTATTACTTCATAATGAGCTCCACTCAACTGGACATCAAAGTCGAT
CAGTTTGACTACCTTATCCGATGGTATCATCAAAACATGAAGGAGCACGC
CAAGCTGTTGAACTACAACGGATTTATTCCCTCGCTAAAGGAACTGCACG
CCATTCTGATACAGCACCCCATTTTTGCTGCTGGAACTGTGCTCACTACC
TTGTCGATGTGTCTTAACAAGACAACCGATGACTTTACCACTGATAGCTT
TTTGGGAAATGAAGAGAATGGCAAATCCCTGAGGGAGGCAATGTTTAGCA
ACGAACGTTATAGGGCCAATATAGAGCGTGTCATGCCATGGATAAATAGA
CGAGGACTGCTTGATAATTTTGCCAACGGACATTCCCAATAAAAGCTTTC
TAGACCAT

BS11247.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-RA 2676 CG6830-PA 1..2676 17..2692 13380 100 Plus
CG6834-RA 2688 CG6834-PA 176..1124 147..1095 1565 77.7 Plus
CG6834-RA 2688 CG6834-PA 2170..2489 2147..2466 580 78.8 Plus
CG6834-RA 2688 CG6834-PA 1853..1991 1830..1968 215 77 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-RA 2781 CG6830-RA 90..2766 17..2693 13385 100 Plus
CG6834-RA 2886 CG6834-RA 255..1203 147..1095 1565 77.7 Plus
CG6834-RA 2886 CG6834-RA 2249..2568 2147..2466 580 78.8 Plus
CG6834-RA 2886 CG6834-RA 1932..2070 1830..1968 215 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11682529..11683088 1386..827 2800 100 Minus
3R 32079331 3R 11683150..11683666 827..311 2585 100 Minus
3R 32079331 3R 11681685..11682177 2110..1618 2465 100 Minus
3R 32079331 3R 11681263..11681630 2477..2110 1840 100 Minus
3R 32079331 3R 11683959..11684253 311..17 1475 100 Minus
3R 32079331 3R 11682235..11682469 1619..1385 1175 100 Minus
3R 32079331 3R 11680987..11681203 2693..2477 1085 100 Minus
3R 32079331 3R 11686905..11687426 832..311 765 76.4 Minus
3R 32079331 3R 11687715..11687879 311..147 630 92.1 Minus
3R 32079331 3R 11685047..11685366 2466..2147 580 78.8 Minus
3R 32079331 3R 11686585..11686803 1095..877 360 77.6 Minus
3R 32079331 3R 11685613..11685751 1968..1830 215 77 Minus
Blast to na_te.dros performed on 2014-11-28 02:09:01 has no hits.

BS11247.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:12 Download gff for BS11247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 88..2761 17..2690 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:14 Download gff for BS11247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 90..2763 17..2690 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:33 Download gff for BS11247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 88..2761 17..2690 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:02 Download gff for BS11247.complete
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 90..2763 17..2690 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:02 Download gff for BS11247.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11680990..11681202 2478..2690 100 <- Minus
3R 11681263..11681629 2111..2477 100 <- Minus
3R 11681685..11682175 1620..2110 100 <- Minus
3R 11682235..11682467 1387..1619 100 <- Minus
3R 11682529..11683088 827..1386 100 <- Minus
3R 11683151..11683665 312..826 100 <- Minus
3R 11683959..11684253 17..311 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:14 Download gff for BS11247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7506712..7506924 2478..2690 100 <- Minus
arm_3R 7506985..7507351 2111..2477 100 <- Minus
arm_3R 7507407..7507897 1620..2110 100 <- Minus
arm_3R 7507957..7508189 1387..1619 100 <- Minus
arm_3R 7508251..7508810 827..1386 100 <- Minus
arm_3R 7508873..7509387 312..826 100 <- Minus
arm_3R 7509681..7509975 17..311 100   Minus

BS11247.pep Sequence

Translation from 16 to 2691

> BS11247.pep
MGLRNSKEKQSNEVKTSKQAPKAQVNPEPPAPPNKPEPEVDHSDLVPKWL
NQTQFEELLAADVDQFSKIVGFRVKPAMAPGENYATLMLRISIDVELTDK
STKLVSFMMKVPHDTPQMEQMMSMANFFTSENAAYTEILPKMEELYKAKG
LDIKFAPRAFKLDATKEPKVANTVLMHDLGQNGFKNINRLECLNLEQTKF
ALTRLAQFHAAGATMVQVHGPYPDIFVNGVMGNNKEAIIAFMEGMLASFR
TSFMANLDKFKNGEEYREKLEKALAGLTMEFMKLGIVDPNEFNALNHGDC
WMNNLLFKMNSSGDLEDMVFVDFQNPKYGSPAMDLLYFIISSVQIDYKLS
HFDFFIRHYQEALVKHLGILGFTGRKPSLRELHRTLIKYGGWVLFPTISV
LPLVLLDPTQSATFDNFMSDSADGVSFRGSLYANKRCQEYIERILPWLDN
RGFLEVSTDPLPPELLAALKPQQPQPENTDQIPDWLNIDDFKEIILSAEP
NFEKILSSTSKLATKPGDNFASKLLKVEIEAQLKDNSVKTFSYILKVHSD
NDAINFSDFNLFPKEIEVYSTYVPAFERFYKDVGLPVTFSPKSFRLSKDV
SKEYLLLENLQPSGFKMVDRMIGMDLEHSKCTLKKLAQWHAASLKYKELN
GPYSPKYNNGIFTEQTAPIFKGMFVNTKKSFIEEVSKFDGVDEYLHKMPE
ILDTYVDRILEDAKINEQAFNVLNHGDAWINNIMFQYESDGRVKETLLLD
HQVTKYGNPAQDLYYFIMSSTQLDIKVDQFDYLIRWYHQNMKEHAKLLNY
NGFIPSLKELHAILIQHPIFAAGTVLTTLSMCLNKTTDDFTTDSFLGNEE
NGKSLREAMFSNERYRANIERVMPWINRRGLLDNFANGHSQ*

BS11247.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-PA 891 CG6830-PA 1..891 1..891 4665 100 Plus
CG6834-PA 895 CG6834-PA 1..894 1..883 3038 63.7 Plus
CHKov1-PE 410 CG10618-PE 6..408 46..455 835 40.2 Plus
CG10562-PA 405 CG10562-PA 3..405 43..456 828 41.4 Plus
CHKov1-PE 410 CG10618-PE 5..408 481..883 776 36.2 Plus
CG10553-PA 414 CG10553-PA 3..414 32..455 776 38.6 Plus
CG10562-PA 405 CG10562-PA 3..404 479..883 769 36.9 Plus
CG6834-PA 895 CG6834-PA 49..472 471..885 710 34.5 Plus