Clone BS11248 Report

Search the DGRC for BS11248

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:112
Well:48
Vector:pDNR-Dual
Associated Gene/Transcripthd-RA
Protein status:BS11248.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11248.3prime Sequence

853 bp (814 high quality bases) assembled on 2006-04-18

> BS11248.3prime
ATGGTCTAGAAAGCTTCTAGCTCCAAGCATATCCCTCATCTCTTTGATAG
CAAACGCGCTCTAAAAGACCTACGGCATGTTGGCCCGTGCGGCAGATGGA
GCCAACTACTGCCGGCAGCAGACCACACTCCGAAAGATTCTGCTCGCCAA
AGACCTGCCCGGCGGCATCTTCTCCTTCCGCATCTGACTGTGGCGTCTCC
GGAGTTTCAAGCAGCTTTTGGGTGGCCTTGCTAAAGGCCAGCGTATTGAT
GCTGCTGGCCAGCGTGGAGCTAAACATCTGGCGCGTCTCGGACAGCAGCT
CCGCCACACTGGGCAGGAATGTAGGTAGGATTAGGCCCTTAATGTCTATG
CTAAAGTAGTCGACGCCATCCAGACGCACTTTCTTGGACCGCGGAACCAA
GTGCTGCATGGTGGCCTTGGGGAAGGCCACTGGCGACAGCAGAGTGGGAG
GCACTCCGGCCAGACGGCCCACTGTGCTGATGGCACTCTTGGCATTTAGC
AGATAGCTAAAGAATCCCTGGCACTCCACGCCATCGACCAGCAGCAAGGA
GTTGTCGCTAAAGTCCTCTCGCATTTCGGCAGCTTGTTGCTTCCTGGCAT
GGGAGGACTGGATACGTCGCAGCTCACGCTCATCCACGCCCAAGCTCTCC
AGCCAGTCCTCGTCGTCGTCTTCATCTTCCTGTGCCGGCGGAGGAGCATC
TTCGCCCGCTTCTGGACCTAGCGAGGTGGTAGTGCTCTCCTCGTTAAAAC
TGTTGTCGTGCGCGTTTCCACTGTTATCGCTCTTAAGAGGCATGCTGAAC
TCGATCCCCTCCTGTCGCAGAGCTTGCCGCATTCCCCGAGTCGACGGCGT
GAC

BS11248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2669-PA 1707 CG2669-RA 871..1707 853..17 4185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
hd-RA 1927 CG2669-RA 1008..1845 853..16 4190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5372674..5373511 16..853 4190 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:16:03 has no hits.

BS11248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:10 Download gff for BS11248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2669-PA 871..1707 17..853 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:48 Download gff for BS11248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2669-PA 871..1707 17..853 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:58:27 Download gff for BS11248.3prime
Subject Subject Range Query Range Percent Splice Strand
hd-RA 1008..1845 16..853 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:43 Download gff for BS11248.3prime
Subject Subject Range Query Range Percent Splice Strand
hd-RA 1008..1845 16..853 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:43 Download gff for BS11248.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5372674..5373511 16..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:58:27 Download gff for BS11248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1198396..1199233 16..853 100   Plus

BS11248.5prime Sequence

859 bp (856 high quality bases) assembled on 2006-04-18

> BS11248.5prime
GAAGTTATCAGTCGACATGTCCACCGAAGCGAGTGTGGCTTCCAAATGGA
CGCGCCCAGATGACTTCATCAAACTGCAGCGGCTCAAGCAGAAGAAGAAC
AAATTGGCAGCCCGCGTGAGCAACAACAACAATAGGCGGCCAAGACACCA
AGTGGATGAGACGGATAAAAGCAAGCTACTGGAGGCTAAGCTCGCCCAGA
AGCGAAAAAATCCGTTTGCGAAATCCACAGCTGATGCCAAGAAACTGCGC
GTTGATCCGCAACTGGCGGACCTCGAACCAGTGGTCACTGCCTCCTCCTG
CTTTGTGCGGGAAACGCCCACGCGCCCGGCGCCCGCCAAATTCGTGCTCC
AGAAGTACGACCCGCAGGCCTTTGCCAAGCTCTTCCAGCATCCCCAAATC
AACGCTGAGGACGAGGACGATGCGGAGTTGGCCGCCCGGCAGAAGCACAC
CGCCCACCTACCTGTGGACTGGTCCCTGAAGACGCGAGCCCGTTTCTTCT
GTCCCACGGAACTGCCTGCCATCCAACTGAAGACCTCGCAGCTGGCCAGC
GGACTCACCAGCTTCGTGCGCTGCATGGACCCGCAGCGAACGGAGAGCAC
GCTGGATATCTCGGACGCAACGCGGTTCAACCAATGCAATTACTACTGGC
AGCACCCGCACCTGCCCTGGCTGACGCTCTACCCGCGCACCGCCAAGGAG
AACGTGGGCGTGGTGGTGGGTGAGCGGGAGCGCAAGGCCCTGGCCGAGGA
GTGGGACTTCAGCTTCCGGGGCCTATTTCAGCTGCTGCGTGCCCGCCAGT
GCCCGTACTTCTACCTGTGTGCCAACACTTTTACGGTGCTGTTCCGAGCT
GCCGGAGTT

BS11248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2669-PA 1707 CG2669-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
hd-RA 1927 CG2669-RA 136..980 15..859 4225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5373539..5374175 859..223 3185 100 Minus
3R 32079331 3R 5374233..5374390 222..65 790 100 Minus
3R 32079331 3R 5374450..5374499 64..15 250 100 Minus
Blast to na_te.dros performed 2015-02-12 05:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 639..693 78..131 119 70.9 Plus

BS11248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:11 Download gff for BS11248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2669-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:49 Download gff for BS11248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2669-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:25 Download gff for BS11248.5prime
Subject Subject Range Query Range Percent Splice Strand
hd-RA 130..980 9..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:28 Download gff for BS11248.5prime
Subject Subject Range Query Range Percent Splice Strand
hd-RA 130..980 9..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:28 Download gff for BS11248.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5373539..5374175 223..859 100 <- Minus
3R 5374233..5374390 65..222 100 <- Minus
3R 5374450..5374505 9..64 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:25 Download gff for BS11248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1199261..1199897 223..859 100 <- Minus
arm_3R 1199955..1200112 65..222 100 <- Minus
arm_3R 1200172..1200227 9..64 94   Minus

BS11248.complete Sequence

1739 bp assembled on 2007-10-26

GenBank Submission: FJ636795

> BS11248.complete
GAAGTTATCAGTCGACATGTCCACCGAAGCGAGTGTGGCTTCCAAATGGA
CGCGCCCAGATGACTTCATCAAACTGCAGCGGCTCAAGCAGAAGAAGAAC
AAATTGGCAGCCCGCGTGAGCAACAACAACAATAGGCGGCCAAGACACCA
AGTGGATGAGACGGATAAAAGCAAGCTACTGGAGGCTAAGCTCGCCCAGA
AGCGAAAAAATCCGTTTGCGAAATCCACAGCTGATGCCAAGAAACTGCGC
GTTGATCCGCAACTGGCGGACCTCGAACCAGTGGTCACTGCCTCCTCCTG
CTTTGTGCGGGAAACGCCCACGCGCCCGGCGCCCGCCAAATTCGTGCTCC
AGAAGTACGACCCGCAGGCCTTTGCCAAGCTCTTCCAGCATCCCCAAATC
AACGCTGAGGACGAGGACGATGCGGAGTTGGCCGCCCGGCAGAAGCACAC
CGCCCACCTACCTGTGGACTGGTCCCTGAAGACGCGAGCCCGTTTCTTCT
GTCCCACGGAACTGCCTGCCATCCAACTGAAGACCTCGCAGCTGGCCAGC
GGACTCACCAGCTTCGTGCGCTGCATGGACCCGCAGCGAACGGAGAGCAC
GCTGGATATCTCGGACGCAACGCGGTTCAACCAATGCAATTACTACTGGC
AGCACCCGCACCTGCCCTGGCTGACGCTCTACCCGCGCACCGCCAAGGAG
AACGTGGGCGTGGTGGTGGGTGAGCGGGAGCGCAAGGCCCTGGCCGAGGA
GTGGGACTTCAGCTTCCGGGGCCTATTTCAGCTGCTGCGTGCCCGCCAGT
GCCCGTACTTCTACCTGTGTGCCAACACTTTTACGGTGCTGTTCCGAGCT
GCCGGAGTTGGCGGTCGGCCGGAGAGCCACGCCTTGGTCACGCCGTCGAC
TCGGGGAATGCGGCAAGCTCTGCGACAGGAGGGGATCGAGTTCAGCATGC
CTCTTAAGAGCGATAACAGTGGAAACGCGCACGACAACAGTTTTAACGAG
GAGAGCACTACCACCTCGCTAGGTCCAGAAGCGGGCGAAGATGCTCCTCC
GCCGGCACAGGAAGATGAAGACGACGACGAGGACTGGCTGGAGAGCTTGG
GCGTGGATGAGCGTGAGCTGCGACGTATCCAGTCCTCCCATGCCAGGAAG
CAACAAGCTGCCGAAATGCGAGAGGACTTTAGCGACAACTCCTTGCTGCT
GGTCGATGGCGTGGAGTGCCAGGGATTCTTTAGCTATCTGCTAAATGCCA
AGAGTGCCATCAGCACAGTGGGCCGTCTGGCCGGAGTGCCTCCCACTCTG
CTGTCGCCAGTGGCCTTCCCCAAGGCCACCATGCAGCACTTGGTTCCGCG
GTCCAAGAAAGTGCGTCTGGATGGCGTCGACTACTTTAGCATAGACATTA
AGGGCCTAATCCTACCTACATTCCTGCCCAGTGTGGCGGAGCTGCTGTCC
GAGACGCGCCAGATGTTTAGCTCCACGCTGGCCAGCAGCATCAATACGCT
GGCCTTTAGCAAGGCCACCCAAAAGCTGCTTGAAACTCCGGAGACGCCAC
AGTCAGATGCGGAAGGAGAAGATGCCGCCGGGCAGGTCTTTGGCGAGCAG
AATCTTTCGGAGTGTGGTCTGCTGCCGGCAGTAGTTGGCTCCATCTGCCG
CACGGGCCAACATGCCGTAGGTCTTTTAGAGCGCGTTTGCTATCAAAGAG
ATGAGGGATATGCTTGGAGCTAGAAGCTTTCTAGACCAT

BS11248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
hd-RA 1707 CG2669-PA 1..1707 17..1723 8535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
hd-RA 1927 CG2669-RA 136..1845 15..1724 8550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5372674..5374175 1724..223 7510 100 Minus
3R 32079331 3R 5374233..5374390 222..65 790 100 Minus
3R 32079331 3R 5374450..5374499 64..15 250 100 Minus
Blast to na_te.dros performed 2014-11-28 00:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 639..693 78..131 119 70.9 Plus

BS11248.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:50 Download gff for BS11248.complete
Subject Subject Range Query Range Percent Splice Strand
hd-RA 1..1707 17..1723 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:34 Download gff for BS11248.complete
Subject Subject Range Query Range Percent Splice Strand
hd-RA 127..1842 9..1724 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:10 Download gff for BS11248.complete
Subject Subject Range Query Range Percent Splice Strand
hd-RA 138..1844 17..1723 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:32 Download gff for BS11248.complete
Subject Subject Range Query Range Percent Splice Strand
hd-RA 135..1841 17..1723 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:02 Download gff for BS11248.complete
Subject Subject Range Query Range Percent Splice Strand
hd-RA 138..1844 17..1723 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:02 Download gff for BS11248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5372675..5374175 223..1723 100 <- Minus
3R 5374233..5374390 65..222 100 <- Minus
3R 5374450..5374497 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:10 Download gff for BS11248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1198397..1199897 223..1723 100 <- Minus
arm_3R 1199955..1200112 65..222 100 <- Minus
arm_3R 1200172..1200219 17..64 100   Minus

BS11248.pep Sequence

Translation from 16 to 1722

> BS11248.pep
MSTEASVASKWTRPDDFIKLQRLKQKKNKLAARVSNNNNRRPRHQVDETD
KSKLLEAKLAQKRKNPFAKSTADAKKLRVDPQLADLEPVVTASSCFVRET
PTRPAPAKFVLQKYDPQAFAKLFQHPQINAEDEDDAELAARQKHTAHLPV
DWSLKTRARFFCPTELPAIQLKTSQLASGLTSFVRCMDPQRTESTLDISD
ATRFNQCNYYWQHPHLPWLTLYPRTAKENVGVVVGERERKALAEEWDFSF
RGLFQLLRARQCPYFYLCANTFTVLFRAAGVGGRPESHALVTPSTRGMRQ
ALRQEGIEFSMPLKSDNSGNAHDNSFNEESTTTSLGPEAGEDAPPPAQED
EDDDEDWLESLGVDERELRRIQSSHARKQQAAEMREDFSDNSLLLVDGVE
CQGFFSYLLNAKSAISTVGRLAGVPPTLLSPVAFPKATMQHLVPRSKKVR
LDGVDYFSIDIKGLILPTFLPSVAELLSETRQMFSSTLASSINTLAFSKA
TQKLLETPETPQSDAEGEDAAGQVFGEQNLSECGLLPAVVGSICRTGQHA
VGLLERVCYQRDEGYAWS*

BS11248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
hd-PA 568 CG2669-PA 1..568 1..568 2949 100 Plus