Clone Sequence Records
BS11248.3prime Sequence
853 bp (814 high quality bases) assembled on 2006-04-18
> BS11248.3prime
ATGGTCTAGAAAGCTTCTAGCTCCAAGCATATCCCTCATCTCTTTGATAG
CAAACGCGCTCTAAAAGACCTACGGCATGTTGGCCCGTGCGGCAGATGGA
GCCAACTACTGCCGGCAGCAGACCACACTCCGAAAGATTCTGCTCGCCAA
AGACCTGCCCGGCGGCATCTTCTCCTTCCGCATCTGACTGTGGCGTCTCC
GGAGTTTCAAGCAGCTTTTGGGTGGCCTTGCTAAAGGCCAGCGTATTGAT
GCTGCTGGCCAGCGTGGAGCTAAACATCTGGCGCGTCTCGGACAGCAGCT
CCGCCACACTGGGCAGGAATGTAGGTAGGATTAGGCCCTTAATGTCTATG
CTAAAGTAGTCGACGCCATCCAGACGCACTTTCTTGGACCGCGGAACCAA
GTGCTGCATGGTGGCCTTGGGGAAGGCCACTGGCGACAGCAGAGTGGGAG
GCACTCCGGCCAGACGGCCCACTGTGCTGATGGCACTCTTGGCATTTAGC
AGATAGCTAAAGAATCCCTGGCACTCCACGCCATCGACCAGCAGCAAGGA
GTTGTCGCTAAAGTCCTCTCGCATTTCGGCAGCTTGTTGCTTCCTGGCAT
GGGAGGACTGGATACGTCGCAGCTCACGCTCATCCACGCCCAAGCTCTCC
AGCCAGTCCTCGTCGTCGTCTTCATCTTCCTGTGCCGGCGGAGGAGCATC
TTCGCCCGCTTCTGGACCTAGCGAGGTGGTAGTGCTCTCCTCGTTAAAAC
TGTTGTCGTGCGCGTTTCCACTGTTATCGCTCTTAAGAGGCATGCTGAAC
TCGATCCCCTCCTGTCGCAGAGCTTGCCGCATTCCCCGAGTCGACGGCGT
GAC
BS11248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2669-PA | 1707 | CG2669-RA | 871..1707 | 853..17 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hd-RA | 1927 | CG2669-RA | 1008..1845 | 853..16 | 4190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5372674..5373511 | 16..853 | 4190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:16:03 has no hits.
BS11248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:10 Download gff for
BS11248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2669-PA | 871..1707 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:48 Download gff for
BS11248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2669-PA | 871..1707 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:58:27 Download gff for
BS11248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 1008..1845 | 16..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:43 Download gff for
BS11248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 1008..1845 | 16..853 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:43 Download gff for
BS11248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5372674..5373511 | 16..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:58:27 Download gff for
BS11248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1198396..1199233 | 16..853 | 100 | | Plus |
BS11248.5prime Sequence
859 bp (856 high quality bases) assembled on 2006-04-18
> BS11248.5prime
GAAGTTATCAGTCGACATGTCCACCGAAGCGAGTGTGGCTTCCAAATGGA
CGCGCCCAGATGACTTCATCAAACTGCAGCGGCTCAAGCAGAAGAAGAAC
AAATTGGCAGCCCGCGTGAGCAACAACAACAATAGGCGGCCAAGACACCA
AGTGGATGAGACGGATAAAAGCAAGCTACTGGAGGCTAAGCTCGCCCAGA
AGCGAAAAAATCCGTTTGCGAAATCCACAGCTGATGCCAAGAAACTGCGC
GTTGATCCGCAACTGGCGGACCTCGAACCAGTGGTCACTGCCTCCTCCTG
CTTTGTGCGGGAAACGCCCACGCGCCCGGCGCCCGCCAAATTCGTGCTCC
AGAAGTACGACCCGCAGGCCTTTGCCAAGCTCTTCCAGCATCCCCAAATC
AACGCTGAGGACGAGGACGATGCGGAGTTGGCCGCCCGGCAGAAGCACAC
CGCCCACCTACCTGTGGACTGGTCCCTGAAGACGCGAGCCCGTTTCTTCT
GTCCCACGGAACTGCCTGCCATCCAACTGAAGACCTCGCAGCTGGCCAGC
GGACTCACCAGCTTCGTGCGCTGCATGGACCCGCAGCGAACGGAGAGCAC
GCTGGATATCTCGGACGCAACGCGGTTCAACCAATGCAATTACTACTGGC
AGCACCCGCACCTGCCCTGGCTGACGCTCTACCCGCGCACCGCCAAGGAG
AACGTGGGCGTGGTGGTGGGTGAGCGGGAGCGCAAGGCCCTGGCCGAGGA
GTGGGACTTCAGCTTCCGGGGCCTATTTCAGCTGCTGCGTGCCCGCCAGT
GCCCGTACTTCTACCTGTGTGCCAACACTTTTACGGTGCTGTTCCGAGCT
GCCGGAGTT
BS11248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2669-PA | 1707 | CG2669-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hd-RA | 1927 | CG2669-RA | 136..980 | 15..859 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5373539..5374175 | 859..223 | 3185 | 100 | Minus |
3R | 32079331 | 3R | 5374233..5374390 | 222..65 | 790 | 100 | Minus |
3R | 32079331 | 3R | 5374450..5374499 | 64..15 | 250 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 05:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 639..693 | 78..131 | 119 | 70.9 | Plus |
BS11248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:03:11 Download gff for
BS11248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2669-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:31:49 Download gff for
BS11248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2669-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:25 Download gff for
BS11248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 130..980 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:28 Download gff for
BS11248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 130..980 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:28 Download gff for
BS11248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5373539..5374175 | 223..859 | 100 | <- | Minus |
3R | 5374233..5374390 | 65..222 | 100 | <- | Minus |
3R | 5374450..5374505 | 9..64 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:25 Download gff for
BS11248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1199261..1199897 | 223..859 | 100 | <- | Minus |
arm_3R | 1199955..1200112 | 65..222 | 100 | <- | Minus |
arm_3R | 1200172..1200227 | 9..64 | 94 | | Minus |
BS11248.complete Sequence
1739 bp assembled on 2007-10-26
GenBank Submission: FJ636795
> BS11248.complete
GAAGTTATCAGTCGACATGTCCACCGAAGCGAGTGTGGCTTCCAAATGGA
CGCGCCCAGATGACTTCATCAAACTGCAGCGGCTCAAGCAGAAGAAGAAC
AAATTGGCAGCCCGCGTGAGCAACAACAACAATAGGCGGCCAAGACACCA
AGTGGATGAGACGGATAAAAGCAAGCTACTGGAGGCTAAGCTCGCCCAGA
AGCGAAAAAATCCGTTTGCGAAATCCACAGCTGATGCCAAGAAACTGCGC
GTTGATCCGCAACTGGCGGACCTCGAACCAGTGGTCACTGCCTCCTCCTG
CTTTGTGCGGGAAACGCCCACGCGCCCGGCGCCCGCCAAATTCGTGCTCC
AGAAGTACGACCCGCAGGCCTTTGCCAAGCTCTTCCAGCATCCCCAAATC
AACGCTGAGGACGAGGACGATGCGGAGTTGGCCGCCCGGCAGAAGCACAC
CGCCCACCTACCTGTGGACTGGTCCCTGAAGACGCGAGCCCGTTTCTTCT
GTCCCACGGAACTGCCTGCCATCCAACTGAAGACCTCGCAGCTGGCCAGC
GGACTCACCAGCTTCGTGCGCTGCATGGACCCGCAGCGAACGGAGAGCAC
GCTGGATATCTCGGACGCAACGCGGTTCAACCAATGCAATTACTACTGGC
AGCACCCGCACCTGCCCTGGCTGACGCTCTACCCGCGCACCGCCAAGGAG
AACGTGGGCGTGGTGGTGGGTGAGCGGGAGCGCAAGGCCCTGGCCGAGGA
GTGGGACTTCAGCTTCCGGGGCCTATTTCAGCTGCTGCGTGCCCGCCAGT
GCCCGTACTTCTACCTGTGTGCCAACACTTTTACGGTGCTGTTCCGAGCT
GCCGGAGTTGGCGGTCGGCCGGAGAGCCACGCCTTGGTCACGCCGTCGAC
TCGGGGAATGCGGCAAGCTCTGCGACAGGAGGGGATCGAGTTCAGCATGC
CTCTTAAGAGCGATAACAGTGGAAACGCGCACGACAACAGTTTTAACGAG
GAGAGCACTACCACCTCGCTAGGTCCAGAAGCGGGCGAAGATGCTCCTCC
GCCGGCACAGGAAGATGAAGACGACGACGAGGACTGGCTGGAGAGCTTGG
GCGTGGATGAGCGTGAGCTGCGACGTATCCAGTCCTCCCATGCCAGGAAG
CAACAAGCTGCCGAAATGCGAGAGGACTTTAGCGACAACTCCTTGCTGCT
GGTCGATGGCGTGGAGTGCCAGGGATTCTTTAGCTATCTGCTAAATGCCA
AGAGTGCCATCAGCACAGTGGGCCGTCTGGCCGGAGTGCCTCCCACTCTG
CTGTCGCCAGTGGCCTTCCCCAAGGCCACCATGCAGCACTTGGTTCCGCG
GTCCAAGAAAGTGCGTCTGGATGGCGTCGACTACTTTAGCATAGACATTA
AGGGCCTAATCCTACCTACATTCCTGCCCAGTGTGGCGGAGCTGCTGTCC
GAGACGCGCCAGATGTTTAGCTCCACGCTGGCCAGCAGCATCAATACGCT
GGCCTTTAGCAAGGCCACCCAAAAGCTGCTTGAAACTCCGGAGACGCCAC
AGTCAGATGCGGAAGGAGAAGATGCCGCCGGGCAGGTCTTTGGCGAGCAG
AATCTTTCGGAGTGTGGTCTGCTGCCGGCAGTAGTTGGCTCCATCTGCCG
CACGGGCCAACATGCCGTAGGTCTTTTAGAGCGCGTTTGCTATCAAAGAG
ATGAGGGATATGCTTGGAGCTAGAAGCTTTCTAGACCAT
BS11248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hd-RA | 1707 | CG2669-PA | 1..1707 | 17..1723 | 8535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hd-RA | 1927 | CG2669-RA | 136..1845 | 15..1724 | 8550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5372674..5374175 | 1724..223 | 7510 | 100 | Minus |
3R | 32079331 | 3R | 5374233..5374390 | 222..65 | 790 | 100 | Minus |
3R | 32079331 | 3R | 5374450..5374499 | 64..15 | 250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 639..693 | 78..131 | 119 | 70.9 | Plus |
BS11248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:50 Download gff for
BS11248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 1..1707 | 17..1723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:34 Download gff for
BS11248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 127..1842 | 9..1724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:10 Download gff for
BS11248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 138..1844 | 17..1723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:32 Download gff for
BS11248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 135..1841 | 17..1723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:02 Download gff for
BS11248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 138..1844 | 17..1723 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:02 Download gff for
BS11248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5372675..5374175 | 223..1723 | 100 | <- | Minus |
3R | 5374233..5374390 | 65..222 | 100 | <- | Minus |
3R | 5374450..5374497 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:10 Download gff for
BS11248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1198397..1199897 | 223..1723 | 100 | <- | Minus |
arm_3R | 1199955..1200112 | 65..222 | 100 | <- | Minus |
arm_3R | 1200172..1200219 | 17..64 | 100 | | Minus |
BS11248.pep Sequence
Translation from 16 to 1722
> BS11248.pep
MSTEASVASKWTRPDDFIKLQRLKQKKNKLAARVSNNNNRRPRHQVDETD
KSKLLEAKLAQKRKNPFAKSTADAKKLRVDPQLADLEPVVTASSCFVRET
PTRPAPAKFVLQKYDPQAFAKLFQHPQINAEDEDDAELAARQKHTAHLPV
DWSLKTRARFFCPTELPAIQLKTSQLASGLTSFVRCMDPQRTESTLDISD
ATRFNQCNYYWQHPHLPWLTLYPRTAKENVGVVVGERERKALAEEWDFSF
RGLFQLLRARQCPYFYLCANTFTVLFRAAGVGGRPESHALVTPSTRGMRQ
ALRQEGIEFSMPLKSDNSGNAHDNSFNEESTTTSLGPEAGEDAPPPAQED
EDDDEDWLESLGVDERELRRIQSSHARKQQAAEMREDFSDNSLLLVDGVE
CQGFFSYLLNAKSAISTVGRLAGVPPTLLSPVAFPKATMQHLVPRSKKVR
LDGVDYFSIDIKGLILPTFLPSVAELLSETRQMFSSTLASSINTLAFSKA
TQKLLETPETPQSDAEGEDAAGQVFGEQNLSECGLLPAVVGSICRTGQHA
VGLLERVCYQRDEGYAWS*
BS11248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hd-PA | 568 | CG2669-PA | 1..568 | 1..568 | 2949 | 100 | Plus |